Wall clock time and date at job start Sun Mar 29 2020 21:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47584 * 2 1 4 4 H 1.08997 * 109.47472 * 305.65995 * 3 2 1 5 5 C 1.50695 * 109.47348 * 185.65082 * 3 2 1 6 6 H 1.08001 * 120.00741 * 240.00380 * 5 3 2 7 7 C 1.37880 * 119.99951 * 60.00040 * 5 3 2 8 8 N 1.31513 * 119.99650 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00373 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.46997 * 90.00174 * 9 7 5 11 11 H 1.48503 * 109.47000 * 210.00339 * 9 7 5 12 12 H 1.48501 * 109.46811 * 330.00421 * 9 7 5 13 13 N 1.46904 * 109.46940 * 65.65696 * 3 2 1 14 14 C 1.46903 * 111.00102 * 205.38985 * 13 3 2 15 15 C 1.52999 * 109.47493 * 185.25526 * 14 13 3 16 16 C 1.47196 * 110.53560 * 57.38552 * 15 14 13 17 17 N 5.72120 * 106.84327 * 49.31105 * 2 1 3 18 18 C 1.54882 * 110.48529 * 180.02562 * 15 14 13 19 19 C 1.54897 * 102.74849 * 156.62006 * 18 15 14 20 20 C 1.54262 * 104.19296 * 322.05758 * 19 18 15 21 21 C 1.53876 * 106.60137 * 23.60844 * 20 19 18 22 22 H 1.09005 * 109.46414 * 55.57933 * 1 2 3 23 23 H 1.08997 * 109.47417 * 175.57596 * 1 2 3 24 24 H 1.08998 * 109.47432 * 295.58923 * 1 2 3 25 25 H 1.09003 * 109.47535 * 239.99621 * 2 1 3 26 26 H 1.09001 * 109.46918 * 120.00192 * 2 1 3 27 27 H 0.97003 * 120.00297 * 179.97438 * 8 7 5 28 28 H 1.00903 * 110.99838 * 329.33571 * 13 3 2 29 29 H 1.09000 * 109.47071 * 65.25111 * 14 13 3 30 30 H 1.09003 * 109.47043 * 305.25929 * 14 13 3 31 31 H 1.09003 * 110.75494 * 274.92983 * 18 15 14 32 32 H 1.08990 * 110.76009 * 38.30707 * 18 15 14 33 33 H 1.09004 * 110.48290 * 80.72862 * 19 18 15 34 34 H 1.08993 * 110.48921 * 203.37748 * 19 18 15 35 35 H 1.09001 * 110.03155 * 264.32446 * 20 19 18 36 36 H 1.09001 * 110.03413 * 142.89246 * 20 19 18 37 37 H 1.08998 * 110.03280 * 240.71368 * 21 20 19 38 38 H 1.09000 * 110.02907 * 119.28474 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5965 1.9847 -0.8349 5 6 3.5405 1.4447 -0.1399 6 1 4.1543 1.8862 0.6314 7 6 4.1300 0.8829 -1.2526 8 7 3.3827 0.3456 -2.1920 9 14 5.9899 0.8863 -1.4265 10 1 6.5464 -0.3475 -0.8155 11 1 6.3524 0.9329 -2.8658 12 1 6.5494 2.0761 -0.7362 13 7 1.6651 2.0944 1.2619 14 6 1.5755 3.5512 1.0955 15 6 1.3130 4.2046 2.4538 16 6 2.3712 3.8464 3.4123 17 7 3.1877 3.5699 4.1521 18 6 1.2136 5.7430 2.3052 19 6 0.3802 6.1531 3.5448 20 6 -0.6627 5.0256 3.6893 21 6 -0.0696 3.7867 2.9957 22 1 -0.3632 0.5810 -0.8478 23 1 -0.3634 -1.0246 -0.0793 24 1 -0.3634 0.4438 0.9268 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.7973 -0.0493 -2.9750 28 1 0.8005 1.7177 1.6205 29 1 0.7591 3.7895 0.4138 30 1 2.5126 3.9284 0.6859 31 1 2.2032 6.1989 2.3370 32 1 0.6937 6.0094 1.3850 33 1 1.0134 6.2028 4.4306 34 1 -0.1134 7.1096 3.3733 35 1 -1.5949 5.3148 3.2040 36 1 -0.8401 4.8140 4.7437 37 1 -0.7140 3.4746 2.1738 38 1 0.0407 2.9739 3.7135 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:29 Heat of formation + Delta-G solvation = -15.004844 kcal Electronic energy + Delta-G solvation = -17110.904557 eV Core-core repulsion = 14565.488692 eV Total energy + Delta-G solvation = -2545.415865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33988 -37.76870 -36.61621 -34.46952 -33.08259 -30.44324 -29.66545 -28.22428 -25.25572 -23.94703 -22.93433 -21.54899 -21.01124 -18.38924 -17.93998 -16.84661 -16.48509 -15.98275 -15.67665 -15.47264 -14.88296 -14.58213 -14.20506 -13.98950 -13.86936 -13.57088 -13.37155 -13.15080 -13.01287 -12.81756 -12.55183 -12.17702 -12.07381 -12.03110 -11.97396 -11.89504 -11.57442 -11.49096 -11.22486 -11.17313 -11.01189 -10.42641 -8.95902 -8.07941 -6.18586 1.36257 1.38489 1.47890 1.91475 1.96497 2.41577 3.03693 3.17047 3.51795 3.71249 3.79666 4.13981 4.41844 4.47560 4.56836 4.60021 4.62445 4.67640 4.75377 4.80671 4.86566 4.99420 5.04694 5.14426 5.16204 5.19966 5.30256 5.35819 5.38344 5.42248 5.56436 5.61716 5.75077 5.91821 6.36907 6.53355 6.77049 6.95073 7.04917 7.50261 8.94425 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.026138 B = 0.007133 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.985668 B = 3924.309315 C = 4524.303395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.229 3.771 4 H -0.017 1.017 5 C -0.511 4.511 6 H 0.037 0.963 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.944 3.056 10 H -0.281 1.281 11 H -0.277 1.277 12 H -0.279 1.279 13 N -0.697 5.697 14 C 0.083 3.917 15 C 0.033 3.967 16 C 0.260 3.740 17 N -0.504 5.504 18 C -0.106 4.106 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.109 4.109 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.333 0.667 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.909 10.028 6.440 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.121 3.879 4 H 0.001 0.999 5 C -0.550 4.550 6 H 0.055 0.945 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.771 3.229 10 H -0.207 1.207 11 H -0.203 1.203 12 H -0.204 1.204 13 N -0.330 5.330 14 C -0.048 4.048 15 C 0.029 3.971 16 C -0.057 4.057 17 N -0.180 5.180 18 C -0.145 4.145 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.148 4.148 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.152 0.848 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.003 9.527 7.628 15.780 hybrid contribution 0.539 -0.346 -1.049 1.229 sum -9.463 9.181 6.580 14.735 Atomic orbital electron populations 1.21736 0.95694 1.01175 1.00892 1.21600 0.94717 0.99035 1.00806 1.18865 0.93390 0.90736 0.84937 0.99913 1.21437 0.93351 1.36510 1.03680 0.94508 1.25534 1.01505 0.95486 0.95749 1.69963 1.35818 1.39856 1.09775 0.85773 0.81823 0.78094 0.77191 1.20670 1.20260 1.20414 1.60502 1.37584 1.03503 1.31370 1.21874 1.01054 0.88696 0.93137 1.19416 0.89681 0.98445 0.89602 1.29244 0.93185 0.90889 0.92403 1.81089 1.12074 1.10917 1.13919 1.22665 1.01487 0.89154 1.01221 1.22400 0.97207 0.99832 0.96599 1.22159 0.99253 0.93339 1.00852 1.22287 0.92064 0.99232 1.01212 0.93764 0.92777 0.92047 0.91498 0.95357 0.92990 0.84825 0.92037 0.92879 0.91524 0.87089 0.93085 0.88600 0.88960 0.91537 0.88565 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 9.67 71.98 0.70 -4.12 16 2 C -0.12 -5.68 5.36 30.59 0.16 -5.52 16 3 C 0.23 11.10 2.02 44.17 0.09 11.19 16 4 H -0.02 -0.87 7.85 -2.39 -0.02 -0.89 16 5 C -0.51 -28.82 8.56 25.60 0.22 -28.60 16 6 H 0.04 2.19 7.81 -2.91 -0.02 2.17 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -52.16 11.29 21.45 0.24 -51.92 16 9 Si 0.94 45.40 29.54 68.60 2.03 47.42 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 N -0.70 -27.69 5.79 -495.45 -2.87 -30.56 16 14 C 0.08 2.73 4.31 86.30 0.37 3.10 16 15 C 0.03 0.85 0.64 -52.92 -0.03 0.82 16 16 C 0.26 9.03 13.12 89.44 1.17 10.20 16 17 N -0.50 -20.62 18.54 20.00 0.37 -20.25 16 18 C -0.11 -2.03 5.79 31.89 0.18 -1.85 16 19 C -0.12 -1.90 6.59 31.67 0.21 -1.69 16 20 C -0.12 -1.73 6.80 31.32 0.21 -1.52 16 21 C -0.11 -2.17 5.12 31.32 0.16 -2.01 16 22 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.06 1.82 6.61 -2.39 -0.02 1.80 16 25 H 0.07 3.55 5.94 -2.39 -0.01 3.53 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 28 H 0.33 11.43 5.86 -89.69 -0.53 10.90 16 29 H 0.06 1.74 8.08 -2.39 -0.02 1.73 16 30 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 31 H 0.07 1.38 8.03 -2.39 -0.02 1.36 16 32 H 0.11 1.65 8.06 -2.39 -0.02 1.63 16 33 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.64 7.79 -2.39 -0.02 1.63 16 38 H 0.06 1.37 7.83 -2.39 -0.02 1.35 16 Total: -1.00 -66.60 306.83 4.17 -62.43 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.50 Total: 11.53 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 3.89 Total: -18.66 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -2.26 Total: -102.72 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -66.60 4.17 -62.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.427 kcal (2) G-P(sol) polarization free energy of solvation -66.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds