Wall clock time and date at job start Sun Mar 29 2020 21:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47115 * 2 1 4 4 H 1.08996 * 109.47542 * 183.88053 * 3 2 1 5 5 C 1.50705 * 109.46927 * 303.88493 * 3 2 1 6 6 H 1.07996 * 119.99778 * 115.43812 * 5 3 2 7 7 C 1.37874 * 119.99693 * 295.43263 * 5 3 2 8 8 N 1.31515 * 120.00374 * 354.08559 * 7 5 3 9 9 Si 1.86799 * 119.99866 * 174.07794 * 7 5 3 10 10 H 1.48498 * 109.47434 * 270.00401 * 9 7 5 11 11 H 1.48497 * 109.47113 * 30.00297 * 9 7 5 12 12 H 1.48500 * 109.47305 * 150.00235 * 9 7 5 13 13 N 1.46907 * 109.47314 * 63.88149 * 3 2 1 14 14 C 1.46903 * 110.99684 * 80.83523 * 13 3 2 15 15 C 1.52997 * 109.46855 * 184.63969 * 14 13 3 16 16 C 1.47206 * 110.01839 * 58.61006 * 15 14 13 17 17 N 4.81020 * 66.22122 * 69.94031 * 2 1 3 18 18 C 1.54266 * 110.03501 * 297.16885 * 15 14 13 19 19 C 1.54888 * 104.19776 * 217.10526 * 18 15 14 20 20 C 1.54893 * 102.74947 * 37.94074 * 19 18 15 21 21 C 1.53876 * 110.03357 * 180.02562 * 15 14 13 22 22 H 1.09006 * 109.47361 * 184.85895 * 1 2 3 23 23 H 1.09003 * 109.48034 * 304.86704 * 1 2 3 24 24 H 1.09003 * 109.47081 * 64.86192 * 1 2 3 25 25 H 1.08992 * 109.47577 * 239.99817 * 2 1 3 26 26 H 1.08998 * 109.47110 * 119.99497 * 2 1 3 27 27 H 0.97006 * 119.99991 * 354.17757 * 8 7 5 28 28 H 1.00902 * 110.99789 * 316.88723 * 13 3 2 29 29 H 1.08999 * 109.47053 * 304.63546 * 14 13 3 30 30 H 1.08994 * 109.47221 * 64.64290 * 14 13 3 31 31 H 1.09000 * 110.48321 * 335.78137 * 18 15 14 32 32 H 1.08999 * 110.48601 * 98.42429 * 18 15 14 33 33 H 1.09003 * 110.75778 * 279.62789 * 19 18 15 34 34 H 1.08999 * 110.75590 * 156.25317 * 19 18 15 35 35 H 1.08994 * 110.48883 * 203.37853 * 20 19 18 36 36 H 1.08998 * 110.48657 * 80.72932 * 20 19 18 37 37 H 1.08999 * 110.03204 * 238.57387 * 21 15 14 38 38 H 1.09000 * 110.02773 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1277 1.4434 -0.0695 5 6 1.4605 2.1801 -1.1796 6 1 0.7884 3.0104 -1.0201 7 6 1.7885 1.7951 -2.4622 8 7 2.6947 0.8622 -2.6573 9 14 0.9454 2.5982 -3.9228 10 1 -0.2777 1.8317 -4.2715 11 1 0.5730 3.9928 -3.5741 12 1 1.8708 2.6088 -5.0842 13 7 1.6283 2.1075 1.2436 14 6 2.5281 1.7570 2.3506 15 6 2.0031 2.3729 3.6490 16 6 0.6413 1.8858 3.9233 17 7 -0.4096 1.5098 4.1348 18 6 2.0033 3.9118 3.5419 19 6 2.4091 4.3912 4.9577 20 6 3.4718 3.3467 5.3807 21 6 2.9371 2.0141 4.8181 22 1 -0.3634 -1.0240 0.0870 23 1 -0.3635 0.5875 0.8431 24 1 -0.3633 0.4366 -0.9304 25 1 1.8933 -0.5138 -0.8899 26 1 1.8932 -0.5137 0.8900 27 1 3.1928 0.5050 -1.9054 28 1 0.6707 1.8862 1.4721 29 1 2.5714 0.6728 2.4543 30 1 3.5264 2.1424 2.1434 31 1 2.7334 4.2427 2.8033 32 1 1.0084 4.2765 3.2862 33 1 1.5541 4.3677 5.6334 34 1 2.8437 5.3900 4.9175 35 1 3.5487 3.2991 6.4668 36 1 4.4390 3.5863 4.9389 37 1 2.3821 1.4796 5.5890 38 1 3.7642 1.4009 4.4604 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152241.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:31 Heat of formation + Delta-G solvation = 1.974040 kcal Electronic energy + Delta-G solvation = -17209.620040 eV Core-core repulsion = 14664.940434 eV Total energy + Delta-G solvation = -2544.679606 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.42168 -36.51713 -35.65893 -32.90977 -31.04123 -29.21539 -28.74746 -25.84184 -23.60365 -23.23698 -21.70919 -20.71999 -19.52307 -17.03212 -16.70867 -15.73251 -14.85211 -14.54174 -13.91052 -13.78736 -13.62334 -13.52109 -13.18886 -12.93355 -12.64765 -12.40797 -11.97403 -11.68696 -11.25939 -11.17683 -11.10770 -11.07917 -10.84293 -10.76609 -10.64199 -10.60768 -10.21067 -10.08628 -10.04321 -9.85532 -8.60257 -8.28644 -7.40440 -6.29474 -3.99220 2.92033 2.93817 3.46539 3.49266 3.65231 3.97036 4.45622 4.56408 4.57773 4.84057 5.07765 5.24993 5.39413 5.39969 5.49298 5.55354 5.62608 5.78308 5.82737 5.95361 5.99202 6.04694 6.10535 6.14270 6.19849 6.27835 6.32541 6.37850 6.68981 6.95268 7.03126 7.24964 7.26958 7.72128 7.86630 8.21064 8.39295 8.63728 8.92407 9.68392 11.06374 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.031722 B = 0.006441 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.458286 B = 4346.084685 C = 4584.063702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.153 4.153 3 C 0.205 3.795 4 H 0.029 0.971 5 C -0.570 4.570 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.917 5.917 9 Si 1.066 2.934 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.675 5.675 14 C 0.070 3.930 15 C 0.031 3.969 16 C 0.223 3.777 17 N -0.444 5.444 18 C -0.095 4.095 19 C -0.131 4.131 20 C -0.122 4.122 21 C -0.112 4.112 22 H 0.026 0.974 23 H 0.032 0.968 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.019 0.981 27 H 0.268 0.732 28 H 0.327 0.673 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 3.943 13.473 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.193 4.193 3 C 0.096 3.904 4 H 0.047 0.953 5 C -0.609 4.609 6 H 0.074 0.926 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.895 3.105 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.212 1.212 13 N -0.307 5.307 14 C -0.061 4.061 15 C 0.027 3.973 16 C -0.095 4.095 17 N -0.119 5.119 18 C -0.134 4.134 19 C -0.168 4.168 20 C -0.159 4.159 21 C -0.151 4.151 22 H 0.045 0.955 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.038 0.962 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.045 0.955 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.242 3.915 11.984 12.668 hybrid contribution 0.145 -0.934 1.755 1.994 sum 1.387 2.981 13.739 14.127 Atomic orbital electron populations 1.21534 0.96872 0.98267 1.01806 1.22228 0.96052 1.01469 0.99531 1.19322 0.95510 0.88341 0.87188 0.95338 1.21846 1.30441 1.17600 0.90970 0.92641 1.25677 0.96673 0.95936 1.00134 1.70770 1.22431 1.26820 1.35375 0.83585 0.75794 0.75540 0.75585 1.21644 1.21471 1.21249 1.60913 1.04861 1.62277 1.02612 1.22125 0.98373 0.96971 0.88659 1.19135 0.83522 0.97587 0.97043 1.29137 0.94703 0.92953 0.92681 1.81172 1.12027 1.09346 1.09336 1.22341 1.03498 0.90357 0.97153 1.22608 0.98539 0.98889 0.96795 1.22346 0.99064 0.94138 1.00364 1.22234 0.98430 0.98582 0.95837 0.95489 0.94871 0.91314 0.91128 0.96219 0.92028 0.85393 0.95467 0.89536 0.88765 0.90918 0.91859 0.90969 0.91531 0.90869 0.91403 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.38 37.15 0.35 -2.43 16 2 C -0.15 -3.50 5.46 -26.73 -0.15 -3.65 16 3 C 0.20 4.86 1.96 -68.86 -0.13 4.73 16 4 H 0.03 0.73 7.31 -51.93 -0.38 0.35 16 5 C -0.57 -15.31 7.43 -34.44 -0.26 -15.57 16 6 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 7 C 0.02 0.53 5.27 -17.82 -0.09 0.43 16 8 N -0.92 -26.59 12.87 55.43 0.71 -25.88 16 9 Si 1.07 24.95 29.91 -169.99 -5.08 19.87 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.68 -13.60 5.94 -107.95 -0.64 -14.24 16 14 C 0.07 1.11 4.08 -3.82 -0.02 1.10 16 15 C 0.03 0.41 0.67 -156.18 -0.10 0.31 16 16 C 0.22 3.52 12.23 -20.76 -0.25 3.27 16 17 N -0.44 -7.96 18.54 42.15 0.78 -7.18 16 18 C -0.09 -1.16 5.59 -25.07 -0.14 -1.30 16 19 C -0.13 -1.24 6.91 -24.74 -0.17 -1.41 16 20 C -0.12 -1.04 6.83 -25.10 -0.17 -1.21 16 21 C -0.11 -1.14 6.08 -25.64 -0.16 -1.29 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.03 0.70 6.24 -51.93 -0.32 0.37 16 24 H 0.07 1.62 7.30 -51.93 -0.38 1.24 16 25 H 0.07 1.78 6.27 -51.93 -0.33 1.45 16 26 H 0.02 0.41 7.04 -51.93 -0.37 0.04 16 27 H 0.27 7.71 6.05 -40.82 -0.25 7.47 16 28 H 0.33 6.78 5.23 -39.29 -0.21 6.57 16 29 H 0.03 0.45 7.01 -51.93 -0.36 0.08 16 30 H 0.09 1.31 8.11 -51.93 -0.42 0.89 16 31 H 0.09 1.19 7.84 -51.93 -0.41 0.78 16 32 H 0.07 0.97 7.83 -51.93 -0.41 0.57 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 38 H 0.08 0.76 7.67 -51.93 -0.40 0.36 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -29.33 300.54 -6.94 -36.27 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.94 Total: 3.66 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.29 Total: -17.03 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.85 Total: -47.29 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.33 -6.94 -36.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152241.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.242 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds