Wall clock time and date at job start Sun Mar 29 2020 21:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46985 * 2 1 4 4 H 1.09001 * 109.46775 * 177.76400 * 3 2 1 5 5 C 1.50696 * 109.47669 * 57.75716 * 3 2 1 6 6 H 1.07995 * 120.00055 * 240.00653 * 5 3 2 7 7 C 1.37877 * 119.99585 * 60.00154 * 5 3 2 8 8 N 1.31510 * 120.00267 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99772 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47190 * 89.99872 * 9 7 5 11 11 H 1.48500 * 109.47212 * 209.99629 * 9 7 5 12 12 H 1.48497 * 109.47264 * 329.99811 * 9 7 5 13 13 N 1.46901 * 109.46773 * 297.75548 * 3 2 1 14 14 C 1.46893 * 111.00436 * 273.70530 * 13 3 2 15 15 C 1.50702 * 109.47602 * 175.80530 * 14 13 3 16 16 C 1.34854 * 125.89086 * 95.02184 * 15 14 13 17 17 C 1.40893 * 107.41638 * 179.97438 * 16 15 14 18 18 C 1.34849 * 107.41824 * 359.97438 * 17 16 15 19 19 C 1.50695 * 125.89297 * 180.02562 * 18 17 16 20 20 N 1.36341 * 125.89120 * 275.31558 * 15 14 13 21 21 C 1.46505 * 125.63613 * 0.02562 * 20 15 14 22 22 H 1.09000 * 109.46994 * 294.17568 * 1 2 3 23 23 H 1.09001 * 109.47015 * 54.17847 * 1 2 3 24 24 H 1.09004 * 109.47016 * 174.17980 * 1 2 3 25 25 H 1.08998 * 109.47233 * 239.99471 * 2 1 3 26 26 H 1.09001 * 109.46486 * 119.99677 * 2 1 3 27 27 H 0.97002 * 120.00115 * 180.02562 * 8 7 5 28 28 H 1.00909 * 110.99837 * 149.74945 * 13 3 2 29 29 H 1.08998 * 109.47266 * 55.80806 * 14 13 3 30 30 H 1.09001 * 109.47528 * 295.80344 * 14 13 3 31 31 H 1.07995 * 126.29099 * 359.95879 * 16 15 14 32 32 H 1.07995 * 126.28831 * 180.02562 * 17 16 15 33 33 H 1.08997 * 109.47214 * 90.02366 * 19 18 17 34 34 H 1.08997 * 109.47413 * 210.03360 * 19 18 17 35 35 H 1.09008 * 109.46794 * 330.02516 * 19 18 17 36 36 H 1.09003 * 109.47076 * 270.21957 * 21 20 15 37 37 H 1.08990 * 109.46935 * 30.22269 * 21 20 15 38 38 H 1.08995 * 109.47191 * 150.22433 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4427 0.0401 5 6 1.4928 2.1688 1.2016 6 1 0.8762 3.0453 1.0682 7 6 1.7795 1.7143 2.4714 8 7 2.5299 0.6466 2.6338 9 14 1.1007 2.6142 3.9609 10 1 -0.2215 2.0437 4.3239 11 1 2.0373 2.4583 5.1027 12 1 0.9465 4.0560 3.6404 13 7 1.5950 2.1191 -1.2257 14 6 2.5365 1.8837 -2.3284 15 6 1.9967 2.5046 -3.5910 16 6 2.3027 3.7304 -4.0626 17 6 1.5838 3.9129 -5.2605 18 6 0.8664 2.7915 -5.4756 19 6 -0.0523 2.5408 -6.6436 20 7 1.1106 1.9261 -4.4507 21 6 0.5217 0.5931 -4.3004 22 1 -0.3633 0.4209 0.9375 23 1 -0.3633 0.6015 -0.8333 24 1 -0.3633 -1.0224 -0.1042 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.7312 0.3266 3.5271 28 1 1.4644 3.1069 -1.0663 29 1 2.6623 0.8111 -2.4761 30 1 3.4997 2.3326 -2.0859 31 1 2.9750 4.4415 -3.6059 32 1 1.6043 4.7894 -5.8911 33 1 0.5100 2.0803 -7.4558 34 1 -0.8579 1.8743 -6.3357 35 1 -0.4736 3.4868 -6.9839 36 1 1.1581 -0.1428 -4.7920 37 1 0.4372 0.3506 -3.2412 38 1 -0.4682 0.5796 -4.7564 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:33 Heat of formation + Delta-G solvation = 36.480792 kcal Electronic energy + Delta-G solvation = -17010.701746 eV Core-core repulsion = 14467.518466 eV Total energy + Delta-G solvation = -2543.183281 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.93853 -36.27412 -33.03789 -32.51520 -31.43365 -30.37511 -27.47893 -26.03078 -25.45071 -23.25956 -22.81731 -19.99224 -19.04170 -18.53749 -16.71877 -15.65605 -15.24798 -14.85852 -14.26106 -13.79706 -13.43403 -13.19506 -13.06894 -13.03359 -12.55258 -12.34631 -12.16787 -11.82472 -11.66839 -11.66329 -11.49512 -11.04103 -10.89750 -10.65570 -10.40346 -10.07508 -9.77196 -9.41816 -8.80917 -8.48194 -8.23577 -7.52849 -7.23113 -6.02607 -4.07736 2.55574 3.29368 3.29568 3.35012 3.36464 3.40036 4.40705 5.05169 5.07058 5.25046 5.28671 5.35616 5.40247 5.55931 5.60760 5.75392 5.84988 5.88347 5.98848 6.15090 6.22302 6.47126 6.63624 6.66226 6.72582 6.80686 7.16280 7.26340 7.43041 7.46827 7.63838 7.69595 7.75232 7.79910 7.82077 8.24221 8.38117 8.65785 9.01461 9.57158 11.03422 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.038035 B = 0.005776 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.982591 B = 4846.212961 C = 5125.357557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.101 4.101 3 C 0.215 3.785 4 H 0.001 0.999 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.682 5.682 14 C 0.124 3.876 15 C 0.044 3.956 16 C -0.205 4.205 17 C -0.200 4.200 18 C -0.003 4.003 19 C -0.078 4.078 20 N -0.433 5.433 21 C 0.071 3.929 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.012 0.988 25 H 0.007 0.993 26 H 0.086 0.914 27 H 0.260 0.740 28 H 0.335 0.665 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.939 0.732 -13.822 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.108 3.892 4 H 0.019 0.981 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.314 5.314 14 C -0.006 4.006 15 C -0.069 4.069 16 C -0.230 4.230 17 C -0.225 4.225 18 C -0.114 4.114 19 C -0.135 4.135 20 N -0.108 5.108 21 C -0.071 4.071 22 H 0.071 0.929 23 H 0.064 0.936 24 H 0.031 0.969 25 H 0.026 0.974 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.085 0.915 30 H 0.059 0.941 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.433 -0.260 -13.802 14.225 hybrid contribution 0.404 0.957 1.164 1.560 sum -3.029 0.697 -12.638 13.015 Atomic orbital electron populations 1.21444 0.97554 0.96975 1.01631 1.21431 0.95004 0.98302 0.99218 1.19138 0.93423 0.91550 0.85130 0.98107 1.21174 1.31575 1.11961 0.90297 0.92296 1.24872 0.95057 0.95029 0.98831 1.69883 1.37490 1.23185 1.22274 0.86575 0.78766 0.80151 0.82390 1.20686 1.21331 1.19951 1.60708 1.46794 1.16832 1.07063 1.20358 0.93827 0.99107 0.87338 1.20490 0.96977 0.94766 0.94666 1.20621 1.06761 0.96752 0.98896 1.20530 1.03639 0.98221 1.00123 1.20216 1.05291 0.92234 0.93684 1.20214 0.96862 1.02426 0.94019 1.43754 1.34687 1.13754 1.18646 1.21996 0.98264 0.81820 1.05058 0.92861 0.93630 0.96907 0.97386 0.89602 0.92978 0.84713 0.91499 0.94066 0.85264 0.85447 0.91774 0.92247 0.90729 0.91786 0.88418 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.45 37.16 0.35 -2.26 16 2 C -0.10 -2.38 5.58 -26.73 -0.15 -2.53 16 3 C 0.21 5.25 2.31 -68.87 -0.16 5.09 16 4 H 0.00 0.03 7.83 -51.93 -0.41 -0.37 16 5 C -0.51 -13.59 7.33 -34.44 -0.25 -13.85 16 6 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.90 11.34 55.43 0.63 -24.27 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 13 N -0.68 -14.29 5.51 -109.23 -0.60 -14.89 16 14 C 0.12 2.29 5.36 -4.98 -0.03 2.27 16 15 C 0.04 0.75 6.44 -81.79 -0.53 0.23 16 16 C -0.21 -3.43 10.77 -39.78 -0.43 -3.86 16 17 C -0.20 -3.05 10.76 -39.78 -0.43 -3.48 16 18 C 0.00 -0.04 6.89 -81.79 -0.56 -0.61 16 19 C -0.08 -0.80 10.11 36.00 0.36 -0.44 16 20 N -0.43 -6.74 3.15 -115.30 -0.36 -7.11 16 21 C 0.07 0.91 10.60 59.85 0.63 1.55 16 22 H 0.05 1.27 7.38 -51.93 -0.38 0.89 16 23 H 0.04 0.96 7.50 -51.93 -0.39 0.57 16 24 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.01 0.17 7.44 -51.93 -0.39 -0.22 16 26 H 0.09 2.27 6.13 -51.93 -0.32 1.95 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.34 7.20 8.23 -39.29 -0.32 6.87 16 29 H 0.07 1.23 7.25 -51.93 -0.38 0.86 16 30 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 32 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.56 7.04 -51.93 -0.37 0.20 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 1.44 7.77 -51.93 -0.40 1.04 16 38 H 0.08 0.81 7.02 -51.93 -0.36 0.45 16 LS Contribution 308.06 15.07 4.64 4.64 Total: -1.00 -28.45 308.06 -8.20 -36.66 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.21 Total: 5.16 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.28 Total: -16.26 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.34 Total: -46.27 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.45 -8.20 -36.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.136 kcal (2) G-P(sol) polarization free energy of solvation -28.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds