Wall clock time and date at job start Sun Mar 29 2020 21:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46985 * 2 1 4 4 H 1.09001 * 109.46775 * 177.76400 * 3 2 1 5 5 C 1.50696 * 109.47669 * 57.75716 * 3 2 1 6 6 H 1.07995 * 120.00055 * 240.00653 * 5 3 2 7 7 C 1.37877 * 119.99585 * 60.00154 * 5 3 2 8 8 N 1.31510 * 120.00267 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99772 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47190 * 89.99872 * 9 7 5 11 11 H 1.48500 * 109.47212 * 209.99629 * 9 7 5 12 12 H 1.48497 * 109.47264 * 329.99811 * 9 7 5 13 13 N 1.46901 * 109.46773 * 297.75548 * 3 2 1 14 14 C 1.46893 * 111.00436 * 273.70530 * 13 3 2 15 15 C 1.50702 * 109.47602 * 175.80530 * 14 13 3 16 16 C 1.34854 * 125.89086 * 95.02184 * 15 14 13 17 17 C 1.40893 * 107.41638 * 179.97438 * 16 15 14 18 18 C 1.34849 * 107.41824 * 359.97438 * 17 16 15 19 19 C 1.50695 * 125.89297 * 180.02562 * 18 17 16 20 20 N 1.36341 * 125.89120 * 275.31558 * 15 14 13 21 21 C 1.46505 * 125.63613 * 0.02562 * 20 15 14 22 22 H 1.09000 * 109.46994 * 294.17568 * 1 2 3 23 23 H 1.09001 * 109.47015 * 54.17847 * 1 2 3 24 24 H 1.09004 * 109.47016 * 174.17980 * 1 2 3 25 25 H 1.08998 * 109.47233 * 239.99471 * 2 1 3 26 26 H 1.09001 * 109.46486 * 119.99677 * 2 1 3 27 27 H 0.97002 * 120.00115 * 180.02562 * 8 7 5 28 28 H 1.00909 * 110.99837 * 149.74945 * 13 3 2 29 29 H 1.08998 * 109.47266 * 55.80806 * 14 13 3 30 30 H 1.09001 * 109.47528 * 295.80344 * 14 13 3 31 31 H 1.07995 * 126.29099 * 359.95879 * 16 15 14 32 32 H 1.07995 * 126.28831 * 180.02562 * 17 16 15 33 33 H 1.08997 * 109.47214 * 90.02366 * 19 18 17 34 34 H 1.08997 * 109.47413 * 210.03360 * 19 18 17 35 35 H 1.09008 * 109.46794 * 330.02516 * 19 18 17 36 36 H 1.09003 * 109.47076 * 270.21957 * 21 20 15 37 37 H 1.08990 * 109.46935 * 30.22269 * 21 20 15 38 38 H 1.08995 * 109.47191 * 150.22433 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4427 0.0401 5 6 1.4928 2.1688 1.2016 6 1 0.8762 3.0453 1.0682 7 6 1.7795 1.7143 2.4714 8 7 2.5299 0.6466 2.6338 9 14 1.1007 2.6142 3.9609 10 1 -0.2215 2.0437 4.3239 11 1 2.0373 2.4583 5.1027 12 1 0.9465 4.0560 3.6404 13 7 1.5950 2.1191 -1.2257 14 6 2.5365 1.8837 -2.3284 15 6 1.9967 2.5046 -3.5910 16 6 2.3027 3.7304 -4.0626 17 6 1.5838 3.9129 -5.2605 18 6 0.8664 2.7915 -5.4756 19 6 -0.0523 2.5408 -6.6436 20 7 1.1106 1.9261 -4.4507 21 6 0.5217 0.5931 -4.3004 22 1 -0.3633 0.4209 0.9375 23 1 -0.3633 0.6015 -0.8333 24 1 -0.3633 -1.0224 -0.1042 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 2.7312 0.3266 3.5271 28 1 1.4644 3.1069 -1.0663 29 1 2.6623 0.8111 -2.4761 30 1 3.4997 2.3326 -2.0859 31 1 2.9750 4.4415 -3.6059 32 1 1.6043 4.7894 -5.8911 33 1 0.5100 2.0803 -7.4558 34 1 -0.8579 1.8743 -6.3357 35 1 -0.4736 3.4868 -6.9839 36 1 1.1581 -0.1428 -4.7920 37 1 0.4372 0.3506 -3.2412 38 1 -0.4682 0.5796 -4.7564 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:32 Heat of formation + Delta-G solvation = 20.513155 kcal Electronic energy + Delta-G solvation = -17011.394155 eV Core-core repulsion = 14467.518466 eV Total energy + Delta-G solvation = -2543.875689 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.11954 -38.09531 -34.79298 -33.64841 -33.05230 -31.83338 -29.08374 -27.12760 -27.11288 -25.10540 -24.25376 -21.21544 -20.92112 -19.73687 -18.51096 -17.20676 -16.75865 -16.31341 -15.91811 -15.30907 -15.11534 -14.68726 -14.41753 -13.97380 -13.88910 -13.80266 -13.58928 -13.29638 -13.03829 -12.87407 -12.77425 -12.62956 -12.52539 -12.42608 -12.24756 -11.87492 -11.63146 -11.32367 -10.81084 -10.54318 -9.41721 -9.07558 -8.68113 -8.09606 -6.21581 1.35282 1.41763 1.43414 1.52540 2.11938 2.18652 2.43180 3.19295 3.74581 3.99012 4.08906 4.20816 4.39117 4.43817 4.51196 4.59585 4.64833 4.74745 4.79082 4.84313 4.87880 4.93979 4.95673 5.15306 5.28024 5.36413 5.44135 5.53178 5.56516 5.70992 5.81795 5.88526 6.21816 6.27406 6.39493 6.48857 6.63437 6.76705 7.00454 7.47075 8.95206 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.038035 B = 0.005776 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.982591 B = 4846.212961 C = 5125.357557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.095 4.095 3 C 0.221 3.779 4 H -0.035 1.035 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.672 5.672 14 C 0.134 3.866 15 C 0.015 3.985 16 C -0.216 4.216 17 C -0.221 4.221 18 C 0.005 3.995 19 C -0.076 4.076 20 N -0.438 5.438 21 C 0.067 3.933 22 H 0.028 0.972 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.022 0.978 26 H 0.057 0.943 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.065 0.935 30 H 0.033 0.967 31 H 0.129 0.871 32 H 0.147 0.853 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 0.854 -15.361 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 C 0.113 3.887 4 H -0.017 1.017 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.195 1.195 13 N -0.303 5.303 14 C 0.004 3.996 15 C -0.097 4.097 16 C -0.241 4.241 17 C -0.245 4.245 18 C -0.107 4.107 19 C -0.133 4.133 20 N -0.114 5.114 21 C -0.074 4.074 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.148 0.852 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.147 0.853 32 H 0.165 0.835 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.908 -0.142 -15.355 16.121 hybrid contribution 0.882 0.924 1.552 2.010 sum -4.026 0.782 -13.803 14.399 Atomic orbital electron populations 1.21287 0.95985 0.98454 1.00514 1.21286 0.96260 0.97393 0.98451 1.18945 0.91166 0.92433 0.86168 1.01699 1.21411 1.31442 1.11957 0.91365 0.92771 1.25577 0.95319 0.95705 1.01371 1.70010 1.38414 1.24309 1.22752 0.85635 0.78144 0.79136 0.79186 1.20223 1.21096 1.19517 1.60661 1.47244 1.16194 1.06206 1.20202 0.93041 0.99053 0.87325 1.20225 0.99022 0.95518 0.94942 1.20851 1.06913 0.96654 0.99727 1.20839 1.04022 0.99583 1.00029 1.20927 1.04558 0.91361 0.93895 1.20357 0.96530 1.03797 0.92659 1.43974 1.34210 1.14676 1.18516 1.22141 0.99970 0.81038 1.04222 0.95262 0.92923 0.94456 0.95933 0.92481 0.93010 0.85186 0.91653 0.94889 0.85296 0.83529 0.90107 0.91020 0.89200 0.90089 0.90484 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.54 9.45 71.98 0.68 -3.86 16 2 C -0.10 -4.53 5.58 30.59 0.17 -4.36 16 3 C 0.22 11.05 2.31 44.17 0.10 11.15 16 4 H -0.03 -1.94 7.83 -2.39 -0.02 -1.96 16 5 C -0.52 -28.24 7.33 25.60 0.19 -28.05 16 6 H 0.05 2.92 7.60 -2.91 -0.02 2.90 16 7 C 0.02 1.07 5.30 84.66 0.45 1.52 16 8 N -0.92 -52.14 11.34 21.45 0.24 -51.90 16 9 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 13 N -0.67 -28.54 5.51 -499.49 -2.75 -31.29 16 14 C 0.13 5.02 5.36 85.56 0.46 5.48 16 15 C 0.02 0.53 6.44 41.08 0.26 0.79 16 16 C -0.22 -7.13 10.77 22.14 0.24 -6.89 16 17 C -0.22 -6.33 10.76 22.14 0.24 -6.09 16 18 C 0.00 0.13 6.89 41.08 0.28 0.41 16 19 C -0.08 -1.28 10.11 71.23 0.72 -0.56 16 20 N -0.44 -12.88 3.15 -518.69 -1.63 -14.52 16 21 C 0.07 1.59 10.60 127.77 1.35 2.94 16 22 H 0.03 1.37 7.38 -2.39 -0.02 1.35 16 23 H 0.05 2.17 7.50 -2.39 -0.02 2.15 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 25 H 0.02 0.97 7.44 -2.39 -0.02 0.96 16 26 H 0.06 3.07 6.13 -2.39 -0.01 3.05 16 27 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 28 H 0.33 14.46 8.23 -89.69 -0.74 13.72 16 29 H 0.07 2.44 7.25 -2.39 -0.02 2.42 16 30 H 0.03 1.28 8.13 -2.39 -0.02 1.26 16 31 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.05 7.04 -2.39 -0.02 1.04 16 35 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 2.16 7.77 -2.39 -0.02 2.14 16 38 H 0.10 1.84 7.02 -2.39 -0.02 1.82 16 Total: -1.00 -61.04 308.06 3.32 -57.71 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.29 Total: 22.03 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 5.15 Total: -27.52 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -4.14 Total: -97.71 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -61.04 3.32 -57.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.226 kcal (2) G-P(sol) polarization free energy of solvation -61.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds