Wall clock time and date at job start Sun Mar 29 2020 21:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47396 * 2 1 4 4 H 1.08997 * 109.47545 * 179.82750 * 3 2 1 5 5 C 1.50694 * 109.47225 * 299.83078 * 3 2 1 6 6 H 1.07999 * 120.00281 * 119.99541 * 5 3 2 7 7 C 1.37882 * 120.00055 * 299.99486 * 5 3 2 8 8 N 1.31516 * 119.99753 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00342 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46932 * 90.00270 * 9 7 5 11 11 H 1.48495 * 109.47311 * 210.00056 * 9 7 5 12 12 H 1.48497 * 109.47343 * 330.00356 * 9 7 5 13 13 N 1.46910 * 109.46833 * 59.82637 * 3 2 1 14 14 C 1.46899 * 110.99545 * 85.93160 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.53615 * 14 13 3 16 16 C 1.34852 * 125.88937 * 95.02934 * 15 14 13 17 17 C 1.40888 * 107.41628 * 179.97438 * 16 15 14 18 18 C 1.34850 * 107.41898 * 359.97438 * 17 16 15 19 19 C 1.50703 * 125.89034 * 180.02562 * 18 17 16 20 20 N 1.36343 * 125.89064 * 274.71863 * 15 14 13 21 21 C 1.46501 * 125.63701 * 359.97438 * 20 15 14 22 22 H 1.09000 * 109.47441 * 175.58667 * 1 2 3 23 23 H 1.09000 * 109.47282 * 55.58891 * 1 2 3 24 24 H 1.09001 * 109.47259 * 295.58867 * 1 2 3 25 25 H 1.08998 * 109.47002 * 120.00239 * 2 1 3 26 26 H 1.09000 * 109.47465 * 240.00507 * 2 1 3 27 27 H 0.96999 * 120.00560 * 179.97438 * 8 7 5 28 28 H 1.00896 * 111.00027 * 209.88626 * 13 3 2 29 29 H 1.08995 * 109.47219 * 295.53446 * 14 13 3 30 30 H 1.08999 * 109.47280 * 55.54123 * 14 13 3 31 31 H 1.08000 * 126.29260 * 359.97376 * 16 15 14 32 32 H 1.08000 * 126.29164 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.46916 * 89.97683 * 19 18 17 34 34 H 1.09005 * 109.46997 * 209.97384 * 19 18 17 35 35 H 1.08994 * 109.47201 * 329.97809 * 19 18 17 36 36 H 1.09000 * 109.46963 * 90.00342 * 21 20 15 37 37 H 1.09001 * 109.46937 * 210.00172 * 21 20 15 38 38 H 1.08994 * 109.47227 * 330.00365 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5412 2.1517 -1.2325 6 1 0.9200 3.0299 -1.1360 7 6 1.8778 1.6795 -2.4834 8 7 2.6339 0.6098 -2.6009 9 14 1.2589 2.5581 -4.0112 10 1 2.2378 3.5998 -4.4139 11 1 1.0973 1.5778 -5.1148 12 1 -0.0502 3.1955 -3.7196 13 7 1.5469 2.1362 1.1974 14 6 2.4393 1.9094 2.3421 15 6 1.9633 2.7220 3.5187 16 6 1.1619 2.2827 4.5103 17 6 0.9657 3.3566 5.4009 18 6 1.6551 4.4111 4.9199 19 6 1.7332 5.7776 5.5505 20 7 2.2733 4.0262 3.7672 21 6 3.1280 4.8743 2.9327 22 1 -0.3634 -1.0246 -0.0791 23 1 -0.3634 0.5808 -0.8478 24 1 -0.3634 0.4439 0.9269 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 2.8705 0.2773 -3.4809 28 1 1.4287 3.1226 1.0209 29 1 2.4321 0.8515 2.6043 30 1 3.4528 2.2115 2.0781 31 1 0.7468 1.2901 4.6046 32 1 0.3723 3.3387 6.3031 33 1 2.5771 5.8121 6.2394 34 1 1.8680 6.5294 4.7729 35 1 0.8110 5.9796 6.0953 36 1 2.5175 5.3830 2.1866 37 1 3.6280 5.6137 3.5585 38 1 3.8744 4.2575 2.4323 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154724.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:35 Heat of formation + Delta-G solvation = 37.293349 kcal Electronic energy + Delta-G solvation = -16945.712265 eV Core-core repulsion = 14402.564219 eV Total energy + Delta-G solvation = -2543.148046 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.98610 -36.26250 -33.04535 -32.59037 -31.45031 -30.33873 -27.48199 -26.11816 -25.47192 -23.24378 -22.75103 -20.09453 -19.03233 -18.58449 -16.64980 -15.70198 -15.27724 -14.87839 -14.25917 -14.00453 -13.44641 -13.14558 -13.08996 -13.06476 -12.58800 -12.24930 -12.20151 -11.93510 -11.72761 -11.55490 -11.28820 -11.18662 -10.94297 -10.74411 -10.38681 -10.08444 -9.69999 -9.35264 -8.79340 -8.48409 -8.26522 -7.55350 -7.19720 -6.03502 -4.09290 2.51353 3.21371 3.26952 3.34590 3.35951 3.38846 4.38905 4.91773 5.00859 5.23954 5.27062 5.28620 5.37237 5.50619 5.57304 5.62994 5.76528 5.83287 5.94761 6.15484 6.26961 6.57072 6.61809 6.71290 6.77118 6.88600 7.26804 7.30652 7.42003 7.50012 7.60847 7.70007 7.76142 7.78515 7.84157 8.26296 8.38510 8.64594 8.99819 9.55561 11.02188 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.032208 B = 0.006026 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.138355 B = 4645.738209 C = 5115.667742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.215 3.785 4 H -0.001 1.001 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.676 5.676 14 C 0.128 3.872 15 C 0.035 3.965 16 C -0.188 4.188 17 C -0.200 4.200 18 C -0.002 4.002 19 C -0.078 4.078 20 N -0.444 5.444 21 C 0.070 3.930 22 H 0.013 0.987 23 H 0.055 0.945 24 H 0.043 0.957 25 H 0.010 0.990 26 H 0.086 0.914 27 H 0.261 0.739 28 H 0.328 0.672 29 H 0.083 0.917 30 H 0.022 0.978 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 6.989 12.003 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.017 0.983 5 C -0.551 4.551 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.307 5.307 14 C -0.002 4.002 15 C -0.077 4.077 16 C -0.212 4.212 17 C -0.225 4.225 18 C -0.113 4.113 19 C -0.135 4.135 20 N -0.121 5.121 21 C -0.072 4.072 22 H 0.032 0.968 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.029 0.971 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.145 0.855 29 H 0.102 0.898 30 H 0.040 0.960 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.448 6.570 11.798 13.511 hybrid contribution 0.463 0.953 -1.187 1.591 sum 0.911 7.523 10.610 13.038 Atomic orbital electron populations 1.21447 0.97443 0.97414 1.01422 1.21427 0.95126 0.98098 0.99456 1.19183 0.92833 0.91660 0.85545 0.98291 1.21168 1.31651 1.11969 0.90325 0.92416 1.24879 0.95039 0.94980 0.98880 1.69883 1.36661 1.22615 1.23514 0.86583 0.79244 0.79339 0.82770 1.20867 1.21175 1.19863 1.60782 1.48555 1.15690 1.05721 1.20428 0.93466 0.98057 0.88235 1.20515 1.03566 0.84065 0.99513 1.20595 1.04353 0.99720 0.96581 1.20582 1.06428 0.93345 1.02152 1.20202 1.03133 0.97325 0.90609 1.20214 1.02561 0.91131 0.99641 1.43832 1.38548 1.10115 1.19597 1.21952 0.94804 0.95201 0.95198 0.96771 0.92594 0.93808 0.97103 0.89536 0.92935 0.85549 0.89828 0.96049 0.85014 0.85348 0.91791 0.92274 0.90626 0.90897 0.90433 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 9.52 37.16 0.35 -2.39 16 2 C -0.10 -2.50 5.59 -26.73 -0.15 -2.65 16 3 C 0.22 5.32 2.30 -68.86 -0.16 5.16 16 4 H 0.00 -0.01 7.71 -51.93 -0.40 -0.41 16 5 C -0.51 -13.65 7.26 -34.44 -0.25 -13.90 16 6 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.91 11.32 55.43 0.63 -24.29 16 9 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.68 -14.44 5.64 -109.22 -0.62 -15.06 16 14 C 0.13 2.40 5.69 -4.97 -0.03 2.37 16 15 C 0.03 0.60 6.35 -81.79 -0.52 0.08 16 16 C -0.19 -3.17 10.76 -39.78 -0.43 -3.60 16 17 C -0.20 -3.03 10.76 -39.78 -0.43 -3.46 16 18 C 0.00 -0.02 6.89 -81.79 -0.56 -0.59 16 19 C -0.08 -0.79 9.87 36.01 0.36 -0.43 16 20 N -0.44 -6.76 3.15 -115.29 -0.36 -7.13 16 21 C 0.07 0.86 10.54 59.85 0.63 1.49 16 22 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.06 1.37 7.07 -51.93 -0.37 1.01 16 24 H 0.04 0.97 7.74 -51.93 -0.40 0.57 16 25 H 0.01 0.24 7.61 -51.93 -0.39 -0.16 16 26 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 28 H 0.33 7.00 8.13 -39.29 -0.32 6.68 16 29 H 0.08 1.58 7.61 -51.93 -0.40 1.18 16 30 H 0.02 0.40 7.01 -51.93 -0.36 0.04 16 31 H 0.13 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.55 7.71 -51.93 -0.40 0.15 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.74 7.64 -51.93 -0.40 0.34 16 38 H 0.08 1.04 7.11 -51.93 -0.37 0.68 16 LS Contribution 307.83 15.07 4.64 4.64 Total: -1.00 -28.91 307.83 -8.21 -37.12 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.20 Total: 5.01 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.28 Total: -16.28 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.35 Total: -46.47 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.91 -8.21 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154724.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.410 kcal (2) G-P(sol) polarization free energy of solvation -28.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds