Wall clock time and date at job start Sun Mar 29 2020 21:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47396 * 2 1 4 4 H 1.08997 * 109.47545 * 179.82750 * 3 2 1 5 5 C 1.50694 * 109.47225 * 299.83078 * 3 2 1 6 6 H 1.07999 * 120.00281 * 119.99541 * 5 3 2 7 7 C 1.37882 * 120.00055 * 299.99486 * 5 3 2 8 8 N 1.31516 * 119.99753 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00342 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46932 * 90.00270 * 9 7 5 11 11 H 1.48495 * 109.47311 * 210.00056 * 9 7 5 12 12 H 1.48497 * 109.47343 * 330.00356 * 9 7 5 13 13 N 1.46910 * 109.46833 * 59.82637 * 3 2 1 14 14 C 1.46899 * 110.99545 * 85.93160 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.53615 * 14 13 3 16 16 C 1.34852 * 125.88937 * 95.02934 * 15 14 13 17 17 C 1.40888 * 107.41628 * 179.97438 * 16 15 14 18 18 C 1.34850 * 107.41898 * 359.97438 * 17 16 15 19 19 C 1.50703 * 125.89034 * 180.02562 * 18 17 16 20 20 N 1.36343 * 125.89064 * 274.71863 * 15 14 13 21 21 C 1.46501 * 125.63701 * 359.97438 * 20 15 14 22 22 H 1.09000 * 109.47441 * 175.58667 * 1 2 3 23 23 H 1.09000 * 109.47282 * 55.58891 * 1 2 3 24 24 H 1.09001 * 109.47259 * 295.58867 * 1 2 3 25 25 H 1.08998 * 109.47002 * 120.00239 * 2 1 3 26 26 H 1.09000 * 109.47465 * 240.00507 * 2 1 3 27 27 H 0.96999 * 120.00560 * 179.97438 * 8 7 5 28 28 H 1.00896 * 111.00027 * 209.88626 * 13 3 2 29 29 H 1.08995 * 109.47219 * 295.53446 * 14 13 3 30 30 H 1.08999 * 109.47280 * 55.54123 * 14 13 3 31 31 H 1.08000 * 126.29260 * 359.97376 * 16 15 14 32 32 H 1.08000 * 126.29164 * 179.97438 * 17 16 15 33 33 H 1.08999 * 109.46916 * 89.97683 * 19 18 17 34 34 H 1.09005 * 109.46997 * 209.97384 * 19 18 17 35 35 H 1.08994 * 109.47201 * 329.97809 * 19 18 17 36 36 H 1.09000 * 109.46963 * 90.00342 * 21 20 15 37 37 H 1.09001 * 109.46937 * 210.00172 * 21 20 15 38 38 H 1.08994 * 109.47227 * 330.00365 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0031 5 6 1.5412 2.1517 -1.2325 6 1 0.9200 3.0299 -1.1360 7 6 1.8778 1.6795 -2.4834 8 7 2.6339 0.6098 -2.6009 9 14 1.2589 2.5581 -4.0112 10 1 2.2378 3.5998 -4.4139 11 1 1.0973 1.5778 -5.1148 12 1 -0.0502 3.1955 -3.7196 13 7 1.5469 2.1362 1.1974 14 6 2.4393 1.9094 2.3421 15 6 1.9633 2.7220 3.5187 16 6 1.1619 2.2827 4.5103 17 6 0.9657 3.3566 5.4009 18 6 1.6551 4.4111 4.9199 19 6 1.7332 5.7776 5.5505 20 7 2.2733 4.0262 3.7672 21 6 3.1280 4.8743 2.9327 22 1 -0.3634 -1.0246 -0.0791 23 1 -0.3634 0.5808 -0.8478 24 1 -0.3634 0.4439 0.9269 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 2.8705 0.2773 -3.4809 28 1 1.4287 3.1226 1.0209 29 1 2.4321 0.8515 2.6043 30 1 3.4528 2.2115 2.0781 31 1 0.7468 1.2901 4.6046 32 1 0.3723 3.3387 6.3031 33 1 2.5771 5.8121 6.2394 34 1 1.8680 6.5294 4.7729 35 1 0.8110 5.9796 6.0953 36 1 2.5175 5.3830 2.1866 37 1 3.6280 5.6137 3.5585 38 1 3.8744 4.2575 2.4323 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154724.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:34 Heat of formation + Delta-G solvation = 20.920183 kcal Electronic energy + Delta-G solvation = -16946.422258 eV Core-core repulsion = 14402.564219 eV Total energy + Delta-G solvation = -2543.858039 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.16007 -38.10360 -34.80679 -33.70160 -33.07635 -31.82824 -29.10200 -27.18322 -27.15012 -25.11365 -24.21131 -21.31811 -20.94616 -19.76696 -18.47281 -17.13754 -16.83771 -16.37525 -15.96316 -15.33973 -15.14362 -14.79690 -14.33811 -13.96703 -13.92546 -13.87229 -13.55248 -13.22775 -13.06228 -12.82093 -12.80695 -12.68156 -12.56238 -12.41819 -12.34941 -11.96383 -11.59848 -11.30698 -10.81428 -10.54314 -9.44080 -9.08002 -8.67852 -8.10209 -6.23002 1.31994 1.40537 1.43287 1.52671 2.10971 2.13810 2.42306 3.18207 3.74931 3.95600 4.01021 4.11918 4.30677 4.34867 4.51869 4.58494 4.63397 4.76016 4.79260 4.80553 4.84386 4.93853 4.97246 5.13575 5.29529 5.39113 5.41480 5.53866 5.58935 5.70162 5.80450 5.87865 6.21265 6.26810 6.38796 6.46072 6.59279 6.75860 6.98947 7.45736 8.94544 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.032208 B = 0.006026 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.138355 B = 4645.738209 C = 5115.667742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C 0.222 3.778 4 H -0.033 1.033 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.672 5.672 14 C 0.137 3.863 15 C 0.006 3.994 16 C -0.200 4.200 17 C -0.220 4.220 18 C 0.007 3.993 19 C -0.076 4.076 20 N -0.448 5.448 21 C 0.066 3.934 22 H 0.033 0.967 23 H 0.035 0.965 24 H 0.049 0.951 25 H 0.020 0.980 26 H 0.060 0.940 27 H 0.261 0.739 28 H 0.327 0.673 29 H 0.077 0.923 30 H 0.019 0.981 31 H 0.130 0.870 32 H 0.148 0.852 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 8.668 12.915 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.114 3.886 4 H -0.015 1.015 5 C -0.562 4.562 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.195 1.195 13 N -0.302 5.302 14 C 0.008 3.992 15 C -0.105 4.105 16 C -0.225 4.225 17 C -0.245 4.245 18 C -0.105 4.105 19 C -0.134 4.134 20 N -0.125 5.125 21 C -0.075 4.075 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.039 0.961 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.148 0.852 32 H 0.166 0.834 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.104 8.260 12.719 15.166 hybrid contribution 0.660 0.448 -1.386 1.599 sum 0.556 8.708 11.333 14.303 Atomic orbital electron populations 1.21302 0.96065 0.98358 1.00733 1.21326 0.96241 0.97675 0.98595 1.18971 0.90828 0.92223 0.86571 1.01530 1.21390 1.31519 1.11979 0.91300 0.92743 1.25602 0.95176 0.95605 1.01631 1.70011 1.37570 1.23774 1.24088 0.85614 0.78810 0.78303 0.79256 1.20177 1.21024 1.19479 1.60707 1.49044 1.15344 1.05122 1.20259 0.92869 0.98178 0.87922 1.20240 1.05368 0.85435 0.99472 1.20817 1.04215 1.00374 0.97096 1.20884 1.07535 0.93111 1.02941 1.20924 1.01147 0.98827 0.89585 1.20360 1.04151 0.88690 1.00176 1.44045 1.38681 1.09603 1.20166 1.22137 0.94453 0.95298 0.95659 0.94792 0.94556 0.93233 0.96109 0.92169 0.92944 0.85613 0.90468 0.96331 0.85185 0.83386 0.90033 0.91073 0.89112 0.90730 0.87201 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.87 9.52 71.98 0.69 -4.18 16 2 C -0.10 -4.93 5.59 30.59 0.17 -4.76 16 3 C 0.22 11.22 2.30 44.17 0.10 11.32 16 4 H -0.03 -1.84 7.71 -2.39 -0.02 -1.85 16 5 C -0.52 -28.16 7.26 25.60 0.19 -27.97 16 6 H 0.05 2.91 7.60 -2.91 -0.02 2.89 16 7 C 0.02 1.05 5.30 84.66 0.45 1.50 16 8 N -0.92 -52.09 11.32 21.45 0.24 -51.85 16 9 Si 0.95 43.08 29.54 68.60 2.03 45.10 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 N -0.67 -29.00 5.64 -499.45 -2.82 -31.82 16 14 C 0.14 5.22 5.69 85.56 0.49 5.71 16 15 C 0.01 0.21 6.35 41.08 0.26 0.47 16 16 C -0.20 -6.64 10.76 22.14 0.24 -6.41 16 17 C -0.22 -6.30 10.76 22.14 0.24 -6.06 16 18 C 0.01 0.19 6.89 41.08 0.28 0.47 16 19 C -0.08 -1.26 9.87 71.24 0.70 -0.56 16 20 N -0.45 -13.02 3.15 -518.68 -1.63 -14.65 16 21 C 0.07 1.50 10.54 127.77 1.35 2.85 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.04 1.76 7.07 -2.39 -0.02 1.75 16 24 H 0.05 2.16 7.74 -2.39 -0.02 2.14 16 25 H 0.02 0.95 7.61 -2.39 -0.02 0.93 16 26 H 0.06 3.31 6.06 -2.39 -0.01 3.30 16 27 H 0.26 14.20 8.31 -92.71 -0.77 13.42 16 28 H 0.33 14.08 8.13 -89.70 -0.73 13.35 16 29 H 0.08 2.99 7.61 -2.39 -0.02 2.97 16 30 H 0.02 0.72 7.01 -2.39 -0.02 0.70 16 31 H 0.13 4.20 8.06 -2.91 -0.02 4.17 16 32 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.03 7.71 -2.38 -0.02 1.01 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.11 1.77 7.64 -2.39 -0.02 1.75 16 38 H 0.07 1.83 7.11 -2.39 -0.02 1.81 16 Total: -1.00 -61.61 307.83 3.27 -58.33 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.30 Total: 22.51 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 5.15 Total: -27.62 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -4.21 Total: -98.32 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -61.61 3.27 -58.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154724.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.255 kcal (2) G-P(sol) polarization free energy of solvation -61.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds