Wall clock time and date at job start Sun Mar 29 2020 21:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47261 * 2 1 4 4 H 1.08991 * 109.47143 * 55.37327 * 3 2 1 5 5 C 1.50700 * 109.47296 * 175.37104 * 3 2 1 6 6 H 1.08004 * 120.00018 * 119.99699 * 5 3 2 7 7 C 1.37881 * 120.00144 * 300.00261 * 5 3 2 8 8 N 1.31513 * 119.99799 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 119.99651 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47145 * 90.00417 * 9 7 5 11 11 H 1.48504 * 109.46941 * 210.00191 * 9 7 5 12 12 H 1.48499 * 109.47398 * 330.00244 * 9 7 5 13 13 N 1.46901 * 109.46941 * 295.36994 * 3 2 1 14 14 C 1.46903 * 110.99905 * 148.06475 * 13 3 2 15 15 C 1.47203 * 109.47017 * 54.49504 * 14 13 3 16 16 N 5.02031 * 113.25612 * 0.75690 * 2 1 3 17 17 C 1.53006 * 109.47056 * 294.49610 * 14 13 3 18 18 C 1.52998 * 109.46886 * 179.97438 * 17 14 13 19 19 C 1.53007 * 109.46776 * 60.00405 * 18 17 14 20 20 C 1.52999 * 109.46833 * 299.99425 * 19 18 17 21 21 C 1.52998 * 109.46970 * 60.00694 * 20 19 18 22 22 H 1.08998 * 109.47234 * 56.60286 * 1 2 3 23 23 H 1.09003 * 109.47303 * 176.60144 * 1 2 3 24 24 H 1.08998 * 109.47209 * 296.60391 * 1 2 3 25 25 H 1.09001 * 109.47087 * 239.99917 * 2 1 3 26 26 H 1.09001 * 109.47201 * 120.00470 * 2 1 3 27 27 H 0.97004 * 119.99359 * 180.02562 * 8 7 5 28 28 H 1.00907 * 110.99994 * 24.11088 * 13 3 2 29 29 H 1.08996 * 109.47040 * 299.99965 * 17 14 13 30 30 H 1.09001 * 109.46941 * 60.00120 * 17 14 13 31 31 H 1.08996 * 109.47558 * 300.00022 * 18 17 14 32 32 H 1.08997 * 109.46987 * 180.02562 * 18 17 14 33 33 H 1.09001 * 109.46945 * 179.97438 * 19 18 17 34 34 H 1.08994 * 109.46935 * 59.99777 * 19 18 17 35 35 H 1.08996 * 109.47205 * 300.00202 * 20 19 18 36 36 H 1.09001 * 109.46692 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.46826 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47558 * 59.99724 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6106 1.9797 0.8456 5 6 3.5426 1.4440 0.1147 6 1 4.1432 1.8903 -0.6642 7 6 4.1508 0.8757 1.2139 8 7 5.4621 0.8775 1.3141 9 14 3.1120 0.1044 2.5613 10 1 2.8883 -1.3310 2.2534 11 1 3.8177 0.2276 3.8621 12 1 1.8042 0.8036 2.6396 13 7 1.6437 2.1019 -1.2514 14 6 1.4062 3.5359 -1.0386 15 6 2.5949 4.1433 -0.4180 16 7 3.5122 4.6120 0.0609 17 6 0.1987 3.7216 -0.1174 18 6 -0.0482 5.2151 0.1048 19 6 -0.3233 5.8920 -1.2395 20 6 0.8841 5.7063 -2.1606 21 6 1.1310 4.2128 -2.3828 22 1 -0.3633 0.5656 -0.8579 23 1 -0.3634 -1.0259 -0.0609 24 1 -0.3633 0.4602 0.9188 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 5.8899 0.4774 2.0873 28 1 0.8323 1.6568 -1.6536 29 1 -0.6814 3.2719 -0.5769 30 1 0.3949 3.2397 0.8404 31 1 0.8320 5.6645 0.5645 32 1 -0.9081 5.3475 0.7614 33 1 -0.4997 6.9560 -1.0812 34 1 -1.2035 5.4426 -1.6991 35 1 1.7643 6.1557 -1.7009 36 1 0.6882 6.1889 -3.1181 37 1 1.9916 4.0805 -3.0386 38 1 0.2509 3.7634 -2.8425 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255155266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:27 Heat of formation + Delta-G solvation = 18.750224 kcal Electronic energy + Delta-G solvation = -17862.841042 eV Core-core repulsion = 15318.888906 eV Total energy + Delta-G solvation = -2543.952136 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.57991 -36.05615 -34.84401 -32.51621 -31.72998 -30.72804 -28.54140 -26.59493 -23.04868 -22.62456 -22.34106 -20.71891 -19.68228 -16.74723 -16.20681 -16.01093 -14.75322 -14.65171 -14.27778 -13.94642 -13.58124 -12.97824 -12.91291 -12.72739 -12.58875 -12.26661 -11.97554 -11.82605 -11.53603 -11.46756 -11.24779 -11.05741 -10.96536 -10.68319 -10.45132 -10.43692 -10.22793 -10.01804 -9.96608 -9.43967 -9.18456 -8.49451 -7.56716 -6.00155 -3.96913 3.24182 3.33081 3.37811 3.67669 3.74237 4.41253 4.52022 4.78461 4.87253 4.94636 5.16029 5.25735 5.30138 5.45312 5.57718 5.64588 5.67665 5.73687 5.77655 5.84379 5.89357 5.98919 6.10146 6.14783 6.22726 6.29646 6.40297 6.43056 6.45737 6.56952 6.60853 6.75264 7.08237 7.69231 7.76033 8.08216 8.58687 8.71739 9.12904 9.61374 11.13411 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027818 B = 0.009546 C = 0.008423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.303378 B = 2932.327783 C = 3323.451518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.138 4.138 3 C 0.182 3.818 4 H 0.011 0.989 5 C -0.493 4.493 6 H 0.080 0.920 7 C 0.069 3.931 8 N -0.895 5.895 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.269 1.269 13 N -0.661 5.661 14 C 0.223 3.777 15 C 0.234 3.766 16 N -0.423 5.423 17 C -0.148 4.148 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.102 4.102 22 H 0.050 0.950 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.262 0.738 28 H 0.335 0.665 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.401 5.186 -5.565 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.176 4.176 3 C 0.074 3.926 4 H 0.029 0.971 5 C -0.531 4.531 6 H 0.098 0.902 7 C -0.132 4.132 8 N -0.533 5.533 9 Si 0.708 3.292 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.293 5.293 14 C 0.128 3.872 15 C -0.085 4.085 16 N -0.099 5.099 17 C -0.188 4.188 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.161 4.161 21 C -0.141 4.141 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.155 0.845 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.187 5.902 -4.950 15.272 hybrid contribution -1.534 -0.965 1.256 2.205 sum -14.721 4.937 -3.694 15.960 Atomic orbital electron populations 1.21934 0.98054 1.00719 1.00787 1.22173 0.93025 1.00304 1.02121 1.19775 0.97247 0.89382 0.86203 0.97126 1.20951 0.88583 1.37211 1.06404 0.90156 1.24934 0.94674 0.96032 0.97580 1.69886 1.08366 1.45308 1.29786 0.87024 0.80629 0.79783 0.81784 1.20524 1.22503 1.19387 1.60735 1.39667 0.98748 1.30182 1.18226 0.85692 0.89953 0.93319 1.28149 0.93765 0.92998 0.93565 1.81060 1.09244 1.11308 1.08249 1.22362 0.97800 0.97266 1.01365 1.21540 1.01704 0.95283 0.97349 1.21537 0.98121 1.00128 0.95667 1.21588 0.98611 0.96281 0.99660 1.21546 1.02778 0.94571 0.95197 0.93067 0.93450 0.93541 0.91141 0.92663 0.92802 0.84477 0.90570 0.90624 0.91931 0.91866 0.92185 0.91810 0.91912 0.91509 0.90293 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.80 37.15 0.36 -2.06 16 2 C -0.14 -2.79 4.98 -26.73 -0.13 -2.92 16 3 C 0.18 4.05 1.05 -68.86 -0.07 3.98 16 4 H 0.01 0.26 4.71 -51.93 -0.24 0.02 16 5 C -0.49 -13.83 7.84 -34.44 -0.27 -14.10 16 6 H 0.08 2.56 7.88 -52.48 -0.41 2.15 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 8 N -0.90 -28.27 13.96 55.43 0.77 -27.49 16 9 Si 0.88 22.10 24.41 -169.99 -4.15 17.96 16 10 H -0.28 -6.74 6.83 56.52 0.39 -6.36 16 11 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 13 N -0.66 -12.20 5.93 -97.08 -0.58 -12.78 16 14 C 0.22 3.70 0.65 -134.38 -0.09 3.61 16 15 C 0.23 4.96 9.02 -20.76 -0.19 4.77 16 16 N -0.42 -10.27 18.51 42.15 0.78 -9.49 16 17 C -0.15 -2.09 4.64 -26.73 -0.12 -2.21 16 18 C -0.12 -1.51 5.70 -26.73 -0.15 -1.66 16 19 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 20 C -0.12 -1.43 5.70 -26.73 -0.15 -1.58 16 21 C -0.10 -1.33 5.01 -26.73 -0.13 -1.46 16 22 H 0.05 0.66 6.38 -51.93 -0.33 0.33 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.06 1.23 3.22 -51.93 -0.17 1.06 16 27 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 28 H 0.33 5.09 6.40 -39.29 -0.25 4.84 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.24 6.24 -51.93 -0.32 0.92 16 31 H 0.06 0.91 7.23 -51.93 -0.38 0.54 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.86 7.22 -51.93 -0.38 0.48 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -32.65 288.03 -5.93 -38.58 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.89 Total: 1.95 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -1.20 Total: -13.07 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.98 Total: -49.76 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.15 Total: 17.96 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.65 -5.93 -38.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.332 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds