Wall clock time and date at job start Sun Mar 29 2020 21:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47261 * 2 1 4 4 H 1.08991 * 109.47143 * 55.37327 * 3 2 1 5 5 C 1.50700 * 109.47296 * 175.37104 * 3 2 1 6 6 H 1.08004 * 120.00018 * 119.99699 * 5 3 2 7 7 C 1.37881 * 120.00144 * 300.00261 * 5 3 2 8 8 N 1.31513 * 119.99799 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 119.99651 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47145 * 90.00417 * 9 7 5 11 11 H 1.48504 * 109.46941 * 210.00191 * 9 7 5 12 12 H 1.48499 * 109.47398 * 330.00244 * 9 7 5 13 13 N 1.46901 * 109.46941 * 295.36994 * 3 2 1 14 14 C 1.46903 * 110.99905 * 148.06475 * 13 3 2 15 15 C 1.47203 * 109.47017 * 54.49504 * 14 13 3 16 16 N 5.02031 * 113.25612 * 0.75690 * 2 1 3 17 17 C 1.53006 * 109.47056 * 294.49610 * 14 13 3 18 18 C 1.52998 * 109.46886 * 179.97438 * 17 14 13 19 19 C 1.53007 * 109.46776 * 60.00405 * 18 17 14 20 20 C 1.52999 * 109.46833 * 299.99425 * 19 18 17 21 21 C 1.52998 * 109.46970 * 60.00694 * 20 19 18 22 22 H 1.08998 * 109.47234 * 56.60286 * 1 2 3 23 23 H 1.09003 * 109.47303 * 176.60144 * 1 2 3 24 24 H 1.08998 * 109.47209 * 296.60391 * 1 2 3 25 25 H 1.09001 * 109.47087 * 239.99917 * 2 1 3 26 26 H 1.09001 * 109.47201 * 120.00470 * 2 1 3 27 27 H 0.97004 * 119.99359 * 180.02562 * 8 7 5 28 28 H 1.00907 * 110.99994 * 24.11088 * 13 3 2 29 29 H 1.08996 * 109.47040 * 299.99965 * 17 14 13 30 30 H 1.09001 * 109.46941 * 60.00120 * 17 14 13 31 31 H 1.08996 * 109.47558 * 300.00022 * 18 17 14 32 32 H 1.08997 * 109.46987 * 180.02562 * 18 17 14 33 33 H 1.09001 * 109.46945 * 179.97438 * 19 18 17 34 34 H 1.08994 * 109.46935 * 59.99777 * 19 18 17 35 35 H 1.08996 * 109.47205 * 300.00202 * 20 19 18 36 36 H 1.09001 * 109.46692 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.46826 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47558 * 59.99724 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6106 1.9797 0.8456 5 6 3.5426 1.4440 0.1147 6 1 4.1432 1.8903 -0.6642 7 6 4.1508 0.8757 1.2139 8 7 5.4621 0.8775 1.3141 9 14 3.1120 0.1044 2.5613 10 1 2.8883 -1.3310 2.2534 11 1 3.8177 0.2276 3.8621 12 1 1.8042 0.8036 2.6396 13 7 1.6437 2.1019 -1.2514 14 6 1.4062 3.5359 -1.0386 15 6 2.5949 4.1433 -0.4180 16 7 3.5122 4.6120 0.0609 17 6 0.1987 3.7216 -0.1174 18 6 -0.0482 5.2151 0.1048 19 6 -0.3233 5.8920 -1.2395 20 6 0.8841 5.7063 -2.1606 21 6 1.1310 4.2128 -2.3828 22 1 -0.3633 0.5656 -0.8579 23 1 -0.3634 -1.0259 -0.0609 24 1 -0.3633 0.4602 0.9188 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 5.8899 0.4774 2.0873 28 1 0.8323 1.6568 -1.6536 29 1 -0.6814 3.2719 -0.5769 30 1 0.3949 3.2397 0.8404 31 1 0.8320 5.6645 0.5645 32 1 -0.9081 5.3475 0.7614 33 1 -0.4997 6.9560 -1.0812 34 1 -1.2035 5.4426 -1.6991 35 1 1.7643 6.1557 -1.7009 36 1 0.6882 6.1889 -3.1181 37 1 1.9916 4.0805 -3.0386 38 1 0.2509 3.7634 -2.8425 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255155266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:27 Heat of formation + Delta-G solvation = -5.480656 kcal Electronic energy + Delta-G solvation = -17863.891771 eV Core-core repulsion = 15318.888906 eV Total energy + Delta-G solvation = -2545.002866 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.87356 -37.52398 -36.55027 -34.42227 -33.28756 -31.73817 -29.96001 -28.31064 -24.54259 -23.87962 -23.66809 -22.02801 -21.07932 -18.81621 -17.67071 -17.36627 -16.54749 -15.95728 -15.61787 -15.32543 -15.02983 -14.54172 -14.30726 -14.06046 -13.96430 -13.66333 -13.46316 -13.23716 -13.04558 -13.00446 -12.65228 -12.60361 -12.35991 -12.18356 -12.02632 -11.62676 -11.52218 -11.39515 -11.31165 -11.05703 -10.95696 -10.66833 -9.10431 -8.26833 -6.26761 1.22321 1.28576 1.37631 2.03762 2.08963 2.28787 3.06390 3.14128 3.44295 3.82078 3.88695 4.15328 4.26651 4.30080 4.39457 4.42631 4.48384 4.58909 4.61127 4.73033 4.85451 4.91349 5.03380 5.08667 5.17654 5.19601 5.25401 5.25604 5.28892 5.39347 5.45723 5.52961 5.56158 5.73844 5.98854 6.43552 6.79641 6.82564 7.01855 7.35973 8.91461 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027818 B = 0.009546 C = 0.008423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.303378 B = 2932.327783 C = 3323.451518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.189 3.811 4 H 0.007 0.993 5 C -0.483 4.483 6 H 0.023 0.977 7 C 0.000 4.000 8 N -0.956 5.956 9 Si 0.944 3.056 10 H -0.259 1.259 11 H -0.309 1.309 12 H -0.243 1.243 13 N -0.668 5.668 14 C 0.214 3.786 15 C 0.251 3.749 16 N -0.498 5.498 17 C -0.142 4.142 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.123 4.123 21 C -0.097 4.097 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.034 0.966 27 H 0.260 0.740 28 H 0.360 0.640 29 H 0.120 0.880 30 H 0.050 0.950 31 H 0.026 0.974 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.028 0.972 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.456 4.712 -6.589 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.079 3.921 4 H 0.024 0.976 5 C -0.522 4.522 6 H 0.042 0.958 7 C -0.196 4.196 8 N -0.597 5.597 9 Si 0.771 3.229 10 H -0.185 1.185 11 H -0.238 1.238 12 H -0.167 1.167 13 N -0.304 5.304 14 C 0.120 3.880 15 C -0.067 4.067 16 N -0.174 5.174 17 C -0.182 4.182 18 C -0.160 4.160 19 C -0.147 4.147 20 C -0.161 4.161 21 C -0.135 4.135 22 H 0.099 0.901 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.184 0.816 29 H 0.138 0.862 30 H 0.068 0.932 31 H 0.045 0.955 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.047 0.953 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.297 5.429 -6.010 20.009 hybrid contribution 0.102 -0.729 1.448 1.625 sum -18.195 4.700 -4.562 19.338 Atomic orbital electron populations 1.21873 0.93507 1.02900 1.02373 1.22041 0.97031 0.97579 1.00979 1.19499 0.93136 0.91610 0.87816 0.97599 1.21248 0.91819 1.34898 1.04264 0.95828 1.25870 0.95766 0.97255 1.00684 1.70091 1.10824 1.47879 1.30928 0.85938 0.79521 0.79967 0.77466 1.18459 1.23816 1.16705 1.60441 1.41673 0.99798 1.28500 1.18805 0.84610 0.88706 0.95912 1.29364 0.93852 0.91518 0.91955 1.81045 1.11744 1.13708 1.10946 1.22364 0.97616 0.98570 0.99635 1.21570 1.01119 0.94104 0.99163 1.21535 0.98309 1.00993 0.93879 1.21615 0.98104 0.95146 1.01250 1.21607 1.03931 0.95469 0.92528 0.90121 0.91238 0.93142 0.91489 0.94748 0.93156 0.81595 0.86178 0.93157 0.95473 0.89538 0.91030 0.88538 0.95333 0.88725 0.92025 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.80 71.98 0.71 -3.09 16 2 C -0.14 -5.20 4.98 30.59 0.15 -5.04 16 3 C 0.19 8.20 1.05 44.17 0.05 8.25 16 4 H 0.01 0.30 4.71 -2.39 -0.01 0.29 16 5 C -0.48 -28.17 7.84 25.60 0.20 -27.96 16 6 H 0.02 1.60 7.88 -2.91 -0.02 1.58 16 7 C 0.00 -0.01 5.45 84.66 0.46 0.46 16 8 N -0.96 -63.87 13.96 21.45 0.30 -63.58 16 9 Si 0.94 46.42 24.41 68.60 1.67 48.10 16 10 H -0.26 -11.81 6.83 99.48 0.68 -11.13 16 11 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 12 H -0.24 -10.81 6.53 99.48 0.65 -10.16 16 13 N -0.67 -23.36 5.93 -461.05 -2.74 -26.10 16 14 C 0.21 6.72 0.65 1.72 0.00 6.72 16 15 C 0.25 11.00 9.02 89.44 0.81 11.80 16 16 N -0.50 -25.82 18.51 20.01 0.37 -25.45 16 17 C -0.14 -3.51 4.64 30.60 0.14 -3.37 16 18 C -0.12 -2.67 5.70 30.60 0.17 -2.50 16 19 C -0.11 -1.80 5.92 30.60 0.18 -1.62 16 20 C -0.12 -2.51 5.70 30.59 0.17 -2.34 16 21 C -0.10 -2.21 5.01 30.59 0.15 -2.06 16 22 H 0.08 1.56 6.38 -2.39 -0.02 1.55 16 23 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.03 1.44 3.22 -2.39 -0.01 1.43 16 27 H 0.26 16.39 8.31 -92.71 -0.77 15.62 16 28 H 0.36 9.34 6.40 -89.69 -0.57 8.77 16 29 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.52 6.24 -2.39 -0.01 1.50 16 31 H 0.03 0.78 7.23 -2.39 -0.02 0.76 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.03 0.77 7.22 -2.39 -0.02 0.75 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -79.49 288.03 3.20 -76.29 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.39 Total: 11.48 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 3.20 Total: -20.75 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -2.07 Total: -115.12 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.67 Total: 48.10 kcal Total: -79.49 3.20 -76.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255155266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.807 kcal (2) G-P(sol) polarization free energy of solvation -79.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds