Wall clock time and date at job start Sun Mar 29 2020 21:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47479 * 2 1 4 4 H 1.08997 * 109.46963 * 304.23183 * 3 2 1 5 5 C 1.52995 * 109.47747 * 184.22738 * 3 2 1 6 6 C 1.47196 * 109.47530 * 174.99976 * 5 3 2 7 7 N 4.86395 * 126.46519 * 355.30439 * 2 1 3 8 8 N 1.46908 * 109.46835 * 64.22911 * 3 2 1 9 9 C 1.46895 * 110.99792 * 222.24093 * 8 3 2 10 10 H 1.09003 * 109.41839 * 327.15425 * 9 8 3 11 11 C 1.52959 * 109.41469 * 87.01255 * 9 8 3 12 12 C 1.53239 * 109.40062 * 183.77534 * 11 9 8 13 13 C 1.51270 * 108.48465 * 305.26369 * 12 11 9 14 14 C 1.37878 * 120.85346 * 231.41679 * 13 12 11 15 15 N 1.31508 * 120.00022 * 179.97438 * 14 13 12 16 16 Si 1.86800 * 119.99895 * 359.97059 * 14 13 12 17 17 H 1.48500 * 109.47355 * 90.00178 * 16 14 13 18 18 H 1.48503 * 109.47259 * 210.00604 * 16 14 13 19 19 H 1.48501 * 109.46867 * 330.00412 * 16 14 13 20 20 C 1.51266 * 118.29831 * 51.38438 * 13 12 11 21 21 C 1.52961 * 109.41590 * 207.29308 * 9 8 3 22 22 H 1.08999 * 109.46905 * 181.80395 * 1 2 3 23 23 H 1.09004 * 109.46779 * 301.80206 * 1 2 3 24 24 H 1.09000 * 109.47089 * 61.79563 * 1 2 3 25 25 H 1.09005 * 109.47182 * 240.00465 * 2 1 3 26 26 H 1.08999 * 109.47136 * 120.00266 * 2 1 3 27 27 H 1.09001 * 109.47289 * 295.00828 * 5 3 2 28 28 H 1.09007 * 109.46905 * 54.99726 * 5 3 2 29 29 H 1.00898 * 111.00029 * 346.19173 * 8 3 2 30 30 H 1.09003 * 109.48230 * 303.67592 * 11 9 8 31 31 H 1.08995 * 109.48380 * 63.72090 * 11 9 8 32 32 H 1.08999 * 109.62164 * 185.58680 * 12 11 9 33 33 H 1.09002 * 109.84975 * 65.07540 * 12 11 9 34 34 H 0.97008 * 119.99807 * 179.97438 * 15 14 13 35 35 H 1.09006 * 109.62766 * 188.93866 * 20 13 12 36 36 H 1.09002 * 109.78452 * 68.46786 * 20 13 12 37 37 H 1.08999 * 109.48073 * 296.27858 * 21 9 8 38 38 H 1.08999 * 109.48085 * 56.31114 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6162 1.9777 -0.8496 5 6 3.5663 1.4438 -0.1063 6 6 4.0486 2.8293 -0.2271 7 7 4.4208 3.8985 -0.3202 8 7 1.6356 2.1048 1.2473 9 6 1.1657 3.4724 0.9887 10 1 1.7180 3.8924 0.1480 11 6 -0.3262 3.4424 0.6527 12 6 -0.7950 4.8558 0.2910 13 6 -0.4318 5.7868 1.4266 14 6 -1.3766 6.6193 1.9882 15 7 -1.0426 7.4216 2.9752 16 14 -3.1311 6.6074 1.3471 17 1 -3.9269 5.6056 2.1010 18 1 -3.7326 7.9534 1.5257 19 1 -3.1287 6.2538 -0.0952 20 6 0.9943 5.7807 1.9308 21 6 1.3987 4.3336 2.2312 22 1 -0.3633 -1.0272 0.0324 23 1 -0.3633 0.5416 0.8734 24 1 -0.3633 0.4857 -0.9056 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.9932 0.9870 0.7865 28 1 3.8698 0.8755 -0.9856 29 1 0.9326 1.5665 1.7311 30 1 -0.4949 2.7769 -0.1940 31 1 -0.8860 3.0822 1.5157 32 1 -1.8755 4.8576 0.1476 33 1 -0.3037 5.1858 -0.6243 34 1 -1.7073 8.0076 3.3700 35 1 1.0636 6.3766 2.8409 36 1 1.6562 6.1954 1.1705 37 1 0.7971 3.9518 3.0561 38 1 2.4534 4.2999 2.5043 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:46 Heat of formation + Delta-G solvation = -2.106169 kcal Electronic energy + Delta-G solvation = -17358.756993 eV Core-core repulsion = 14813.900456 eV Total energy + Delta-G solvation = -2544.856537 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.68854 -36.33186 -35.43837 -32.64047 -30.96693 -30.06842 -29.51235 -26.44529 -24.16489 -21.84601 -21.21726 -20.56797 -19.31212 -17.25053 -16.16364 -15.84028 -15.07119 -14.39773 -14.15551 -13.79525 -13.53139 -13.07014 -12.85372 -12.77211 -12.57431 -12.15901 -12.02049 -11.98708 -11.69920 -11.28441 -11.17157 -11.04556 -10.91005 -10.78150 -10.71164 -10.30200 -10.08685 -9.75715 -9.59284 -8.84178 -8.71224 -8.42726 -7.87541 -6.05276 -3.95545 3.10097 3.15178 3.27029 3.35929 3.37331 4.23128 4.40491 4.43870 4.91493 4.96127 5.07394 5.21545 5.37967 5.50287 5.58437 5.65120 5.77067 5.82643 5.86279 5.97158 6.08899 6.18287 6.26123 6.50343 6.75572 6.82767 6.91257 6.94115 7.05852 7.25593 7.43189 7.57777 7.68123 7.76318 7.91231 7.93792 7.95500 8.46021 9.03071 9.59133 11.04495 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027541 B = 0.007678 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.405024 B = 3646.117032 C = 4299.429400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.128 4.128 3 C 0.086 3.914 4 H 0.060 0.940 5 C -0.015 4.015 6 C 0.209 3.791 7 N -0.436 5.436 8 N -0.687 5.687 9 C 0.099 3.901 10 H 0.063 0.937 11 C -0.132 4.132 12 C -0.012 4.012 13 C -0.485 4.485 14 C 0.074 3.926 15 N -0.890 5.890 16 Si 0.887 3.113 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.269 1.269 20 C 0.009 3.991 21 C -0.090 4.090 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.341 0.659 30 H 0.029 0.971 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.013 0.987 34 H 0.263 0.737 35 H 0.056 0.944 36 H 0.001 0.999 37 H 0.046 0.954 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -16.293 -5.398 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.166 4.166 3 C -0.026 4.026 4 H 0.078 0.922 5 C -0.056 4.056 6 C -0.109 4.109 7 N -0.113 5.113 8 N -0.319 5.319 9 C -0.009 4.009 10 H 0.081 0.919 11 C -0.172 4.172 12 C -0.051 4.051 13 C -0.504 4.504 14 C -0.128 4.128 15 N -0.528 5.528 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.194 1.194 20 C -0.029 4.029 21 C -0.129 4.129 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.161 0.839 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.019 0.981 37 H 0.065 0.935 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.825 -14.352 -5.238 16.022 hybrid contribution -2.082 -0.499 -0.597 2.223 sum 2.742 -14.851 -5.835 16.190 Atomic orbital electron populations 1.21870 0.95505 1.01703 1.02518 1.21795 0.96316 0.95721 1.02813 1.21530 0.92467 0.94742 0.93898 0.92166 1.19417 0.96564 0.85149 1.04454 1.29033 0.93469 0.95224 0.93188 1.81231 1.09346 1.11799 1.08932 1.60835 1.46284 1.04220 1.20550 1.21596 0.93765 0.86606 0.98981 0.91892 1.22250 0.96660 0.99431 0.98818 1.19691 0.96188 0.92312 0.96873 1.20046 0.95098 1.19755 1.15501 1.24849 0.98312 0.95011 0.94634 1.69845 1.34434 1.24194 1.24324 0.86684 0.85096 0.77087 0.79599 1.20505 1.21651 1.19373 1.19372 0.94233 0.91285 0.97979 1.21533 0.97908 0.97964 0.95468 0.92555 0.92117 0.92600 0.91206 0.90841 0.87246 0.88012 0.83881 0.95205 0.92880 0.95421 0.96813 0.92680 0.92556 0.98095 0.93475 0.94877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.46 37.16 0.35 -1.11 16 2 C -0.13 -1.04 5.39 -26.73 -0.14 -1.19 16 3 C 0.09 0.95 2.00 -67.71 -0.14 0.81 16 4 H 0.06 0.77 7.29 -51.93 -0.38 0.39 16 5 C -0.01 -0.14 5.39 -29.52 -0.16 -0.30 16 6 C 0.21 3.07 13.79 -20.76 -0.29 2.78 16 7 N -0.44 -8.05 18.54 42.15 0.78 -7.27 16 8 N -0.69 -9.89 5.90 -99.78 -0.59 -10.48 16 9 C 0.10 1.88 1.84 -67.76 -0.12 1.76 16 10 H 0.06 1.31 6.58 -51.93 -0.34 0.97 16 11 C -0.13 -2.60 5.17 -26.63 -0.14 -2.74 16 12 C -0.01 -0.30 5.60 -27.48 -0.15 -0.45 16 13 C -0.48 -13.15 5.51 -98.92 -0.55 -13.70 16 14 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 15 N -0.89 -26.35 12.73 55.43 0.71 -25.64 16 16 Si 0.89 21.54 27.27 -169.99 -4.64 16.90 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.27 -6.34 6.46 56.52 0.37 -5.97 16 20 C 0.01 0.24 5.97 -27.49 -0.16 0.08 16 21 C -0.09 -2.01 5.54 -26.64 -0.15 -2.16 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.34 4.61 6.22 -39.29 -0.24 4.36 16 30 H 0.03 0.51 7.57 -51.93 -0.39 0.12 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.03 0.65 4.78 -51.93 -0.25 0.40 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.06 1.62 7.07 -51.93 -0.37 1.26 16 36 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 300.20 15.07 4.52 4.52 Total: -1.00 -31.10 300.20 -7.09 -38.20 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.14 Total: -2.00 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.74 Total: -14.22 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.90 Total: -43.39 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.64 Total: 16.90 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.10 -7.09 -38.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.089 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds