Wall clock time and date at job start Sun Mar 29 2020 21:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47479 * 2 1 4 4 H 1.08997 * 109.46963 * 304.23183 * 3 2 1 5 5 C 1.52995 * 109.47747 * 184.22738 * 3 2 1 6 6 C 1.47196 * 109.47530 * 174.99976 * 5 3 2 7 7 N 4.86395 * 126.46519 * 355.30439 * 2 1 3 8 8 N 1.46908 * 109.46835 * 64.22911 * 3 2 1 9 9 C 1.46895 * 110.99792 * 222.24093 * 8 3 2 10 10 H 1.09003 * 109.41839 * 327.15425 * 9 8 3 11 11 C 1.52959 * 109.41469 * 87.01255 * 9 8 3 12 12 C 1.53239 * 109.40062 * 183.77534 * 11 9 8 13 13 C 1.51270 * 108.48465 * 305.26369 * 12 11 9 14 14 C 1.37878 * 120.85346 * 231.41679 * 13 12 11 15 15 N 1.31508 * 120.00022 * 179.97438 * 14 13 12 16 16 Si 1.86800 * 119.99895 * 359.97059 * 14 13 12 17 17 H 1.48500 * 109.47355 * 90.00178 * 16 14 13 18 18 H 1.48503 * 109.47259 * 210.00604 * 16 14 13 19 19 H 1.48501 * 109.46867 * 330.00412 * 16 14 13 20 20 C 1.51266 * 118.29831 * 51.38438 * 13 12 11 21 21 C 1.52961 * 109.41590 * 207.29308 * 9 8 3 22 22 H 1.08999 * 109.46905 * 181.80395 * 1 2 3 23 23 H 1.09004 * 109.46779 * 301.80206 * 1 2 3 24 24 H 1.09000 * 109.47089 * 61.79563 * 1 2 3 25 25 H 1.09005 * 109.47182 * 240.00465 * 2 1 3 26 26 H 1.08999 * 109.47136 * 120.00266 * 2 1 3 27 27 H 1.09001 * 109.47289 * 295.00828 * 5 3 2 28 28 H 1.09007 * 109.46905 * 54.99726 * 5 3 2 29 29 H 1.00898 * 111.00029 * 346.19173 * 8 3 2 30 30 H 1.09003 * 109.48230 * 303.67592 * 11 9 8 31 31 H 1.08995 * 109.48380 * 63.72090 * 11 9 8 32 32 H 1.08999 * 109.62164 * 185.58680 * 12 11 9 33 33 H 1.09002 * 109.84975 * 65.07540 * 12 11 9 34 34 H 0.97008 * 119.99807 * 179.97438 * 15 14 13 35 35 H 1.09006 * 109.62766 * 188.93866 * 20 13 12 36 36 H 1.09002 * 109.78452 * 68.46786 * 20 13 12 37 37 H 1.08999 * 109.48073 * 296.27858 * 21 9 8 38 38 H 1.08999 * 109.48085 * 56.31114 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6162 1.9777 -0.8496 5 6 3.5663 1.4438 -0.1063 6 6 4.0486 2.8293 -0.2271 7 7 4.4208 3.8985 -0.3202 8 7 1.6356 2.1048 1.2473 9 6 1.1657 3.4724 0.9887 10 1 1.7180 3.8924 0.1480 11 6 -0.3262 3.4424 0.6527 12 6 -0.7950 4.8558 0.2910 13 6 -0.4318 5.7868 1.4266 14 6 -1.3766 6.6193 1.9882 15 7 -1.0426 7.4216 2.9752 16 14 -3.1311 6.6074 1.3471 17 1 -3.9269 5.6056 2.1010 18 1 -3.7326 7.9534 1.5257 19 1 -3.1287 6.2538 -0.0952 20 6 0.9943 5.7807 1.9308 21 6 1.3987 4.3336 2.2312 22 1 -0.3633 -1.0272 0.0324 23 1 -0.3633 0.5416 0.8734 24 1 -0.3633 0.4857 -0.9056 25 1 1.8934 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.9932 0.9870 0.7865 28 1 3.8698 0.8755 -0.9856 29 1 0.9326 1.5665 1.7311 30 1 -0.4949 2.7769 -0.1940 31 1 -0.8860 3.0822 1.5157 32 1 -1.8755 4.8576 0.1476 33 1 -0.3037 5.1858 -0.6243 34 1 -1.7073 8.0076 3.3700 35 1 1.0636 6.3766 2.8409 36 1 1.6562 6.1954 1.1705 37 1 0.7971 3.9518 3.0561 38 1 2.4534 4.2999 2.5043 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:46 Heat of formation + Delta-G solvation = -22.592309 kcal Electronic energy + Delta-G solvation = -17359.645339 eV Core-core repulsion = 14813.900456 eV Total energy + Delta-G solvation = -2545.744883 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.95395 -37.79071 -36.71772 -34.41412 -32.17380 -31.39843 -31.25930 -28.10196 -25.08633 -23.65874 -23.07002 -21.54551 -20.96415 -18.37461 -17.96036 -16.86745 -16.49121 -16.21621 -15.26048 -14.96595 -14.81454 -14.67545 -14.46222 -14.10341 -13.94473 -13.84604 -13.40647 -13.32929 -13.00281 -12.79594 -12.69484 -12.56169 -12.06726 -11.94979 -11.88564 -11.72378 -11.54524 -11.50873 -11.40643 -10.78922 -10.62052 -10.56769 -9.16774 -8.19491 -6.14709 1.34516 1.37026 1.46711 1.99008 2.05255 2.37381 3.04889 3.30795 3.35686 4.04322 4.12229 4.23934 4.29900 4.38519 4.54559 4.64155 4.70660 4.82013 4.85872 4.97736 5.00851 5.03370 5.07762 5.11318 5.17410 5.21169 5.30024 5.37028 5.47126 5.54354 5.58413 5.60098 5.74696 5.80275 6.27410 6.32944 6.69112 6.85967 6.91742 7.43066 8.92215 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027541 B = 0.007678 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.405024 B = 3646.117032 C = 4299.429400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.117 4.117 3 C 0.083 3.917 4 H 0.046 0.954 5 C -0.014 4.014 6 C 0.232 3.768 7 N -0.517 5.517 8 N -0.685 5.685 9 C 0.116 3.884 10 H 0.045 0.955 11 C -0.123 4.123 12 C -0.017 4.017 13 C -0.498 4.498 14 C 0.016 3.984 15 N -0.935 5.935 16 Si 0.948 3.052 17 H -0.267 1.267 18 H -0.293 1.293 19 H -0.255 1.255 20 C 0.007 3.993 21 C -0.079 4.079 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.134 0.866 28 H 0.150 0.850 29 H 0.350 0.650 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.007 0.993 34 H 0.263 0.737 35 H 0.020 0.980 36 H -0.022 1.022 37 H 0.041 0.959 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 -20.098 -6.733 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.155 4.155 3 C -0.028 4.028 4 H 0.064 0.936 5 C -0.054 4.054 6 C -0.084 4.084 7 N -0.195 5.195 8 N -0.317 5.317 9 C 0.006 3.994 10 H 0.063 0.937 11 C -0.162 4.162 12 C -0.055 4.055 13 C -0.518 4.518 14 C -0.182 4.182 15 N -0.575 5.575 16 Si 0.773 3.227 17 H -0.193 1.193 18 H -0.219 1.219 19 H -0.179 1.179 20 C -0.031 4.031 21 C -0.117 4.117 22 H 0.090 0.910 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.151 0.849 28 H 0.168 0.832 29 H 0.171 0.829 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.038 0.962 36 H -0.003 1.003 37 H 0.060 0.940 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.204 -18.194 -6.587 19.801 hybrid contribution -1.812 0.663 -0.181 1.938 sum 2.392 -17.530 -6.768 18.943 Atomic orbital electron populations 1.21902 0.96425 1.02392 1.01285 1.21753 0.95340 0.93353 1.05022 1.21691 0.93346 0.96370 0.91427 0.93557 1.19869 0.95253 0.82488 1.07809 1.30114 0.91555 0.95913 0.90837 1.81257 1.12001 1.14466 1.11816 1.60697 1.46044 1.02224 1.22740 1.21165 0.93348 0.88801 0.96049 0.93715 1.22130 0.96722 0.97262 1.00066 1.19726 0.96566 0.94047 0.95129 1.20637 0.95007 1.19981 1.16132 1.25727 1.02673 0.94759 0.95039 1.70007 1.35776 1.25545 1.26168 0.85705 0.80098 0.77126 0.79760 1.19263 1.21933 1.17903 1.19317 0.94546 0.93649 0.95573 1.21322 0.97382 0.95861 0.97171 0.90983 0.93699 0.93467 0.88261 0.89327 0.84854 0.83238 0.82915 0.91917 0.92822 0.94878 0.97447 0.92821 0.96174 1.00327 0.94012 0.95124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.46 71.98 0.68 -1.63 16 2 C -0.12 -1.27 5.39 30.59 0.16 -1.11 16 3 C 0.08 1.51 2.00 44.91 0.09 1.60 16 4 H 0.05 1.02 7.29 -2.39 -0.02 1.00 16 5 C -0.01 -0.21 5.39 28.79 0.16 -0.05 16 6 C 0.23 6.46 13.79 89.44 1.23 7.70 16 7 N -0.52 -19.32 18.54 20.00 0.37 -18.95 16 8 N -0.68 -17.88 5.90 -469.60 -2.77 -20.65 16 9 C 0.12 4.30 1.84 44.89 0.08 4.38 16 10 H 0.04 1.85 6.58 -2.39 -0.02 1.83 16 11 C -0.12 -4.59 5.17 30.66 0.16 -4.43 16 12 C -0.02 -0.77 5.60 30.11 0.17 -0.60 16 13 C -0.50 -27.61 5.51 -16.17 -0.09 -27.70 16 14 C 0.02 0.89 5.46 84.66 0.46 1.36 16 15 N -0.93 -57.51 12.73 21.45 0.27 -57.24 16 16 Si 0.95 44.36 27.27 68.60 1.87 46.23 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 19 H -0.25 -11.24 6.46 99.48 0.64 -10.60 16 20 C 0.01 0.40 5.97 30.10 0.18 0.58 16 21 C -0.08 -3.59 5.54 30.66 0.17 -3.42 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.04 0.78 6.57 -2.39 -0.02 0.76 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.15 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.35 8.32 6.22 -89.70 -0.56 7.76 16 30 H 0.06 1.96 7.57 -2.39 -0.02 1.94 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.03 1.49 4.78 -2.39 -0.01 1.47 16 33 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 35 H 0.02 1.22 7.07 -2.38 -0.02 1.20 16 36 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 37 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.42 300.20 3.62 -68.80 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 0.42 Total: 5.13 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 3.46 Total: -23.32 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -2.13 Total: -96.84 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.87 Total: 46.23 kcal Total: -72.42 3.62 -68.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.205 kcal (2) G-P(sol) polarization free energy of solvation -72.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds