Wall clock time and date at job start Sun Mar 29 2020 21:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47172 * 2 1 4 4 H 1.09002 * 109.47061 * 301.09743 * 3 2 1 5 5 C 1.52997 * 109.47455 * 181.10064 * 3 2 1 6 6 C 1.47192 * 109.47803 * 175.00122 * 5 3 2 7 7 N 4.86393 * 126.67667 * 356.44294 * 2 1 3 8 8 N 1.46907 * 109.47356 * 61.09879 * 3 2 1 9 9 C 1.46901 * 110.99778 * 235.87545 * 8 3 2 10 10 C 1.50695 * 110.02028 * 52.37136 * 9 8 3 11 11 H 1.08005 * 119.99820 * 265.42978 * 10 9 8 12 12 C 1.37873 * 120.00414 * 85.42726 * 10 9 8 13 13 N 1.31515 * 120.00637 * 169.86261 * 12 10 9 14 14 Si 1.86808 * 119.99699 * 349.86475 * 12 10 9 15 15 H 1.48505 * 109.46965 * 95.34071 * 14 12 10 16 16 H 1.48504 * 109.46898 * 215.33832 * 14 12 10 17 17 H 1.48497 * 109.47189 * 335.33818 * 14 12 10 18 18 C 1.54265 * 110.03155 * 290.92369 * 9 8 3 19 19 C 1.54883 * 104.19726 * 217.10917 * 18 9 8 20 20 C 1.54887 * 102.75041 * 37.94512 * 19 18 9 21 21 C 1.53874 * 110.02940 * 173.76009 * 9 8 3 22 22 H 1.09004 * 109.46930 * 290.69925 * 1 2 3 23 23 H 1.09003 * 109.46636 * 50.69298 * 1 2 3 24 24 H 1.09000 * 109.47403 * 170.69512 * 1 2 3 25 25 H 1.08991 * 109.47037 * 239.99770 * 2 1 3 26 26 H 1.08997 * 109.46907 * 119.99759 * 2 1 3 27 27 H 1.09000 * 109.46956 * 294.99959 * 5 3 2 28 28 H 1.08998 * 109.46927 * 54.99195 * 5 3 2 29 29 H 1.00892 * 111.00029 * 111.91667 * 8 3 2 30 30 H 0.96996 * 120.00279 * 185.00377 * 13 12 10 31 31 H 1.08995 * 110.48749 * 335.78955 * 18 9 8 32 32 H 1.09001 * 110.48139 * 98.42808 * 18 9 8 33 33 H 1.09007 * 110.75664 * 279.62616 * 19 18 9 34 34 H 1.08997 * 110.75941 * 156.26120 * 19 18 9 35 35 H 1.08999 * 110.48520 * 203.38183 * 20 19 18 36 36 H 1.08996 * 110.48681 * 80.73344 * 20 19 18 37 37 H 1.09000 * 110.03567 * 238.56631 * 21 9 8 38 38 H 1.09007 * 110.03346 * 0.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6607 1.9620 -0.8800 5 6 3.5698 1.4426 -0.0277 6 6 4.0583 2.8258 -0.1486 7 7 4.4352 3.8934 -0.2420 8 7 1.5722 2.1273 1.2125 9 6 0.8261 3.3466 0.8738 10 6 -0.2615 3.0269 -0.1191 11 1 -0.0807 3.1508 -1.1767 12 6 -1.4873 2.5761 0.3225 13 7 -2.4964 2.4871 -0.5162 14 14 -1.7149 2.0918 2.1123 15 1 -2.2704 3.2421 2.8696 16 1 -2.6522 0.9431 2.1988 17 1 -0.4033 1.7050 2.6911 18 6 1.7827 4.4060 0.2885 19 6 1.2512 5.7486 0.8486 20 6 0.8216 5.3722 2.2883 21 6 0.2150 3.9609 2.1453 22 1 -0.3633 0.3633 0.9614 23 1 -0.3633 0.6510 -0.7952 24 1 -0.3634 -1.0141 -0.1662 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9499 1.0024 0.8942 28 1 3.9177 0.8585 -0.8796 29 1 2.3422 2.3345 1.8307 30 1 -3.3764 2.2398 -0.1917 31 1 2.8029 4.2280 0.6283 32 1 1.7362 4.4017 -0.8005 33 1 0.3964 6.0976 0.2691 34 1 2.0407 6.4999 0.8651 35 1 0.0736 6.0732 2.6587 36 1 1.6866 5.3503 2.9511 37 1 -0.8682 4.0286 2.0439 38 1 0.4724 3.3546 3.0138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:44 Heat of formation + Delta-G solvation = 42.302864 kcal Electronic energy + Delta-G solvation = -18374.350596 eV Core-core repulsion = 15831.419780 eV Total energy + Delta-G solvation = -2542.930817 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.98235 -36.42043 -35.25700 -32.39251 -30.96152 -29.79436 -28.05873 -26.70043 -23.82867 -23.31748 -20.40658 -19.62314 -18.98053 -17.11745 -16.26454 -15.27241 -15.20326 -14.56780 -14.46249 -13.81244 -13.46610 -13.02840 -12.96371 -12.59080 -12.36016 -12.06879 -11.91549 -11.34527 -11.24837 -11.03809 -10.77140 -10.60013 -10.55148 -10.37324 -10.10782 -10.00051 -9.82345 -9.44323 -9.30277 -9.07720 -8.87753 -8.44015 -7.25860 -6.03368 -4.05483 3.04074 3.06541 3.38600 3.52876 3.68765 4.30965 4.51424 4.90931 5.31195 5.37960 5.52709 5.59744 5.65494 5.69650 5.73957 5.99818 6.11585 6.24900 6.34827 6.38616 6.50098 6.54688 6.60419 6.66254 6.70175 6.72934 6.85402 6.89794 6.95103 7.06946 7.19822 7.23304 7.64496 7.67652 7.84630 8.13511 8.41911 8.68466 8.97036 9.61020 11.04779 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.020829 B = 0.014529 C = 0.010286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.965203 B = 1926.659877 C = 2721.418464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C 0.101 3.899 4 H 0.091 0.909 5 C -0.054 4.054 6 C 0.209 3.791 7 N -0.437 5.437 8 N -0.673 5.673 9 C 0.211 3.789 10 C -0.497 4.497 11 H 0.069 0.931 12 C 0.088 3.912 13 N -0.894 5.894 14 Si 0.887 3.113 15 H -0.304 1.304 16 H -0.311 1.311 17 H -0.226 1.226 18 C -0.152 4.152 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.134 4.134 22 H 0.059 0.941 23 H 0.082 0.918 24 H 0.022 0.978 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.306 0.694 30 H 0.262 0.738 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.073 0.927 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.760 -3.385 3.308 9.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.134 4.134 3 C -0.010 4.010 4 H 0.109 0.891 5 C -0.095 4.095 6 C -0.107 4.107 7 N -0.115 5.115 8 N -0.303 5.303 9 C 0.122 3.878 10 C -0.535 4.535 11 H 0.087 0.913 12 C -0.115 4.115 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.233 1.233 16 H -0.241 1.241 17 H -0.149 1.149 18 C -0.192 4.192 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.172 4.172 22 H 0.078 0.922 23 H 0.101 0.899 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.614 -2.307 3.184 9.469 hybrid contribution 0.158 0.017 0.699 0.717 sum 8.772 -2.290 3.884 9.863 Atomic orbital electron populations 1.21833 0.94332 0.99020 1.04528 1.21382 0.97809 0.94636 0.99559 1.21484 0.86492 0.96543 0.96518 0.89112 1.20169 0.99756 0.84687 1.04905 1.29168 0.93081 0.95354 0.93072 1.81112 1.09621 1.11905 1.08834 1.61365 1.26484 1.28196 1.14223 1.19638 0.91559 0.84696 0.91885 1.20631 0.95032 1.44933 0.92949 0.91297 1.25027 0.95604 0.93331 0.97562 1.69912 1.00461 1.47563 1.35192 0.87185 0.79074 0.75924 0.85938 1.23294 1.24071 1.14894 1.23566 0.98900 0.96529 1.00195 1.22277 0.99577 0.97172 0.96014 1.22286 0.99061 0.97422 0.96887 1.22686 1.00870 0.94905 0.98721 0.92174 0.89927 0.95899 0.93351 0.93122 0.87799 0.87591 0.87622 0.92788 0.92236 0.92909 0.91586 0.93711 0.92938 0.93101 0.90916 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.03 37.16 0.30 -2.47 16 2 C -0.10 -1.48 5.64 -26.73 -0.15 -1.63 16 3 C 0.10 1.64 1.62 -67.71 -0.11 1.53 16 4 H 0.09 1.76 6.08 -51.93 -0.32 1.44 16 5 C -0.05 -0.64 5.01 -29.52 -0.15 -0.79 16 6 C 0.21 3.16 12.27 -20.76 -0.25 2.90 16 7 N -0.44 -7.65 16.29 42.15 0.69 -6.96 16 8 N -0.67 -12.44 4.13 -93.08 -0.38 -12.83 16 9 C 0.21 4.47 0.35 -131.64 -0.05 4.43 16 10 C -0.50 -12.52 5.41 -34.44 -0.19 -12.71 16 11 H 0.07 1.94 7.55 -52.48 -0.40 1.55 16 12 C 0.09 2.34 3.48 -17.82 -0.06 2.28 16 13 N -0.89 -25.66 13.95 55.43 0.77 -24.89 16 14 Si 0.89 21.51 20.40 -169.99 -3.47 18.04 16 15 H -0.30 -7.51 6.75 56.52 0.38 -7.13 16 16 H -0.31 -7.85 7.11 56.52 0.40 -7.45 16 17 H -0.23 -5.12 5.27 56.52 0.30 -4.82 16 18 C -0.15 -3.08 4.01 -25.08 -0.10 -3.18 16 19 C -0.11 -2.19 6.91 -24.74 -0.17 -2.36 16 20 C -0.12 -2.23 6.83 -25.07 -0.17 -2.40 16 21 C -0.13 -2.86 3.87 -25.61 -0.10 -2.96 16 22 H 0.06 1.30 3.85 -51.93 -0.20 1.10 16 23 H 0.08 1.89 6.17 -51.93 -0.32 1.57 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 28 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.31 5.16 7.64 -39.30 -0.30 4.86 16 30 H 0.26 7.26 8.32 -40.82 -0.34 6.92 16 31 H 0.06 1.14 3.63 -51.93 -0.19 0.95 16 32 H 0.05 1.16 7.69 -51.93 -0.40 0.76 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.74 3.82 -51.93 -0.20 1.54 16 38 H 0.06 1.18 6.51 -51.93 -0.34 0.84 16 LS Contribution 271.81 15.07 4.10 4.10 Total: -1.00 -28.66 271.81 -5.22 -33.87 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.72 Total: 6.04 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -1.20 Total: -17.37 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 1.08 Total: -44.68 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -3.47 Total: 18.04 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.66 -5.22 -33.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.175 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds