Wall clock time and date at job start Sun Mar 29 2020 21:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47172 * 2 1 4 4 H 1.09002 * 109.47061 * 301.09743 * 3 2 1 5 5 C 1.52997 * 109.47455 * 181.10064 * 3 2 1 6 6 C 1.47192 * 109.47803 * 175.00122 * 5 3 2 7 7 N 4.86393 * 126.67667 * 356.44294 * 2 1 3 8 8 N 1.46907 * 109.47356 * 61.09879 * 3 2 1 9 9 C 1.46901 * 110.99778 * 235.87545 * 8 3 2 10 10 C 1.50695 * 110.02028 * 52.37136 * 9 8 3 11 11 H 1.08005 * 119.99820 * 265.42978 * 10 9 8 12 12 C 1.37873 * 120.00414 * 85.42726 * 10 9 8 13 13 N 1.31515 * 120.00637 * 169.86261 * 12 10 9 14 14 Si 1.86808 * 119.99699 * 349.86475 * 12 10 9 15 15 H 1.48505 * 109.46965 * 95.34071 * 14 12 10 16 16 H 1.48504 * 109.46898 * 215.33832 * 14 12 10 17 17 H 1.48497 * 109.47189 * 335.33818 * 14 12 10 18 18 C 1.54265 * 110.03155 * 290.92369 * 9 8 3 19 19 C 1.54883 * 104.19726 * 217.10917 * 18 9 8 20 20 C 1.54887 * 102.75041 * 37.94512 * 19 18 9 21 21 C 1.53874 * 110.02940 * 173.76009 * 9 8 3 22 22 H 1.09004 * 109.46930 * 290.69925 * 1 2 3 23 23 H 1.09003 * 109.46636 * 50.69298 * 1 2 3 24 24 H 1.09000 * 109.47403 * 170.69512 * 1 2 3 25 25 H 1.08991 * 109.47037 * 239.99770 * 2 1 3 26 26 H 1.08997 * 109.46907 * 119.99759 * 2 1 3 27 27 H 1.09000 * 109.46956 * 294.99959 * 5 3 2 28 28 H 1.08998 * 109.46927 * 54.99195 * 5 3 2 29 29 H 1.00892 * 111.00029 * 111.91667 * 8 3 2 30 30 H 0.96996 * 120.00279 * 185.00377 * 13 12 10 31 31 H 1.08995 * 110.48749 * 335.78955 * 18 9 8 32 32 H 1.09001 * 110.48139 * 98.42808 * 18 9 8 33 33 H 1.09007 * 110.75664 * 279.62616 * 19 18 9 34 34 H 1.08997 * 110.75941 * 156.26120 * 19 18 9 35 35 H 1.08999 * 110.48520 * 203.38183 * 20 19 18 36 36 H 1.08996 * 110.48681 * 80.73344 * 20 19 18 37 37 H 1.09000 * 110.03567 * 238.56631 * 21 9 8 38 38 H 1.09007 * 110.03346 * 0.02562 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6607 1.9620 -0.8800 5 6 3.5698 1.4426 -0.0277 6 6 4.0583 2.8258 -0.1486 7 7 4.4352 3.8934 -0.2420 8 7 1.5722 2.1273 1.2125 9 6 0.8261 3.3466 0.8738 10 6 -0.2615 3.0269 -0.1191 11 1 -0.0807 3.1508 -1.1767 12 6 -1.4873 2.5761 0.3225 13 7 -2.4964 2.4871 -0.5162 14 14 -1.7149 2.0918 2.1123 15 1 -2.2704 3.2421 2.8696 16 1 -2.6522 0.9431 2.1988 17 1 -0.4033 1.7050 2.6911 18 6 1.7827 4.4060 0.2885 19 6 1.2512 5.7486 0.8486 20 6 0.8216 5.3722 2.2883 21 6 0.2150 3.9609 2.1453 22 1 -0.3633 0.3633 0.9614 23 1 -0.3633 0.6510 -0.7952 24 1 -0.3634 -1.0141 -0.1662 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9499 1.0024 0.8942 28 1 3.9177 0.8585 -0.8796 29 1 2.3422 2.3345 1.8307 30 1 -3.3764 2.2398 -0.1917 31 1 2.8029 4.2280 0.6283 32 1 1.7362 4.4017 -0.8005 33 1 0.3964 6.0976 0.2691 34 1 2.0407 6.4999 0.8651 35 1 0.0736 6.0732 2.6587 36 1 1.6866 5.3503 2.9511 37 1 -0.8682 4.0286 2.0439 38 1 0.4724 3.3546 3.0138 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:44 Heat of formation + Delta-G solvation = 22.229935 kcal Electronic energy + Delta-G solvation = -18375.221024 eV Core-core repulsion = 15831.419780 eV Total energy + Delta-G solvation = -2543.801244 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52441 -37.78395 -36.62050 -34.38646 -32.46359 -31.14855 -29.71310 -28.39975 -25.55609 -24.81442 -21.95591 -21.12949 -20.68111 -18.31321 -18.06363 -16.97951 -16.80712 -16.03638 -15.87322 -15.37038 -14.87302 -14.77909 -14.47464 -14.14649 -13.93007 -13.54247 -13.33837 -12.92772 -12.74982 -12.69166 -12.30614 -12.22343 -12.11849 -11.90600 -11.73903 -11.56223 -11.26288 -11.06559 -10.96450 -10.86422 -10.72974 -10.47659 -8.77282 -8.13035 -6.15231 1.42296 1.53435 1.72651 1.85472 1.91114 2.49833 3.14112 3.22297 3.73118 3.96995 4.00500 4.13181 4.18402 4.58220 4.60996 4.62837 4.79416 4.84236 4.85277 4.90730 4.92007 4.99578 5.01140 5.11729 5.12982 5.23179 5.33486 5.40933 5.44297 5.48013 5.58038 5.70173 5.85537 6.02091 6.27228 6.69274 6.72801 6.79971 7.20570 7.53776 8.99362 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.020829 B = 0.014529 C = 0.010286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.965203 B = 1926.659877 C = 2721.418464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C 0.100 3.900 4 H 0.050 0.950 5 C -0.044 4.044 6 C 0.225 3.775 7 N -0.485 5.485 8 N -0.677 5.677 9 C 0.215 3.785 10 C -0.476 4.476 11 H 0.022 0.978 12 C 0.048 3.952 13 N -0.946 5.946 14 Si 0.936 3.064 15 H -0.312 1.312 16 H -0.329 1.329 17 H -0.193 1.193 18 C -0.144 4.144 19 C -0.116 4.116 20 C -0.111 4.111 21 C -0.141 4.141 22 H 0.039 0.961 23 H 0.038 0.962 24 H 0.034 0.966 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.325 0.675 30 H 0.258 0.742 31 H 0.080 0.920 32 H 0.022 0.978 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.693 -4.615 5.451 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.011 4.011 4 H 0.068 0.932 5 C -0.084 4.084 6 C -0.090 4.090 7 N -0.164 5.164 8 N -0.308 5.308 9 C 0.125 3.875 10 C -0.515 4.515 11 H 0.040 0.960 12 C -0.150 4.150 13 N -0.586 5.586 14 Si 0.768 3.232 15 H -0.242 1.242 16 H -0.260 1.260 17 H -0.114 1.114 18 C -0.184 4.184 19 C -0.154 4.154 20 C -0.149 4.149 21 C -0.178 4.178 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.163 0.837 28 H 0.162 0.838 29 H 0.144 0.856 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.591 -3.537 5.333 13.240 hybrid contribution -0.736 0.400 -0.098 0.844 sum 10.855 -3.137 5.235 12.453 Atomic orbital electron populations 1.21752 0.97859 0.98538 1.01549 1.21360 0.94386 0.94463 1.02418 1.21416 0.89665 0.96301 0.93753 0.93203 1.20301 0.95943 0.83484 1.08698 1.29792 0.91883 0.95723 0.91591 1.81129 1.11174 1.13444 1.10659 1.61064 1.27585 1.26434 1.15691 1.19423 0.90965 0.86067 0.91060 1.20668 0.96182 1.42972 0.91657 0.95974 1.25563 0.95352 0.93593 1.00538 1.70052 1.00928 1.50584 1.37046 0.86441 0.79817 0.74467 0.82454 1.24150 1.25967 1.11431 1.23480 0.99791 0.96842 0.98237 1.22298 0.99357 0.97202 0.96537 1.22268 1.00262 0.95810 0.96520 1.22682 0.99138 0.97049 0.98967 0.94226 0.94306 0.94648 0.90393 0.90186 0.83727 0.83842 0.85644 0.93368 0.90232 0.95942 0.93845 0.91763 0.91927 0.90229 0.93889 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 8.03 71.98 0.58 -4.83 16 2 C -0.09 -2.42 5.64 30.59 0.17 -2.25 16 3 C 0.10 2.97 1.62 44.91 0.07 3.04 16 4 H 0.05 1.92 6.08 -2.39 -0.01 1.91 16 5 C -0.04 -0.83 5.01 28.79 0.14 -0.69 16 6 C 0.23 6.08 12.27 89.44 1.10 7.17 16 7 N -0.49 -15.99 16.29 20.00 0.33 -15.66 16 8 N -0.68 -23.08 4.13 -448.40 -1.85 -24.93 16 9 C 0.21 8.93 0.35 3.50 0.00 8.93 16 10 C -0.48 -24.91 5.41 25.60 0.14 -24.77 16 11 H 0.02 1.34 7.55 -2.91 -0.02 1.32 16 12 C 0.05 2.63 3.48 84.65 0.29 2.92 16 13 N -0.95 -57.40 13.95 21.45 0.30 -57.10 16 14 Si 0.94 44.98 20.40 68.60 1.40 46.38 16 15 H -0.31 -15.23 6.75 99.48 0.67 -14.56 16 16 H -0.33 -16.60 7.11 99.48 0.71 -15.89 16 17 H -0.19 -8.12 5.27 99.48 0.52 -7.60 16 18 C -0.14 -5.73 4.01 31.67 0.13 -5.60 16 19 C -0.12 -4.39 6.91 31.88 0.22 -4.17 16 20 C -0.11 -3.87 6.83 31.67 0.22 -3.65 16 21 C -0.14 -5.73 3.87 31.32 0.12 -5.61 16 22 H 0.04 1.67 3.85 -2.39 -0.01 1.66 16 23 H 0.04 1.82 6.17 -2.39 -0.01 1.81 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.15 1.76 8.11 -2.39 -0.02 1.74 16 28 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.32 9.39 7.64 -89.70 -0.69 8.71 16 30 H 0.26 15.11 8.32 -92.71 -0.77 14.34 16 31 H 0.08 2.88 3.63 -2.39 -0.01 2.87 16 32 H 0.02 1.00 7.69 -2.39 -0.02 0.98 16 33 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.04 2.03 3.82 -2.39 -0.01 2.02 16 38 H 0.07 2.76 6.51 -2.38 -0.02 2.74 16 Total: -1.00 -67.49 271.81 3.51 -63.98 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.16 Total: 16.84 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 3.18 Total: -29.50 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -1.23 Total: -97.70 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.40 Total: 46.38 kcal Total: -67.49 3.51 -63.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.207 kcal (2) G-P(sol) polarization free energy of solvation -67.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds