Wall clock time and date at job start Sun Mar 29 2020 21:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47092 * 2 1 4 4 H 1.08998 * 109.46637 * 90.08683 * 3 2 1 5 5 C 1.52991 * 109.47141 * 210.08549 * 3 2 1 6 6 C 1.47200 * 109.47432 * 185.00065 * 5 3 2 7 7 N 4.86387 * 125.53524 * 352.17046 * 2 1 3 8 8 N 1.46900 * 109.47156 * 330.08679 * 3 2 1 9 9 C 1.46905 * 110.99746 * 79.06488 * 8 3 2 10 10 C 1.50696 * 110.01755 * 252.09791 * 9 8 3 11 11 H 1.07998 * 120.00243 * 112.46806 * 10 9 8 12 12 C 1.37884 * 120.00137 * 292.74401 * 10 9 8 13 13 N 1.31509 * 119.99954 * 174.27016 * 12 10 9 14 14 Si 1.86803 * 119.99776 * 354.27732 * 12 10 9 15 15 H 1.48498 * 109.46958 * 4.99435 * 14 12 10 16 16 H 1.48501 * 109.47068 * 124.99802 * 14 12 10 17 17 H 1.48502 * 109.46983 * 244.99710 * 14 12 10 18 18 C 1.54266 * 110.03494 * 13.49036 * 9 8 3 19 19 C 1.54968 * 104.15879 * 95.75370 * 18 9 8 20 20 C 1.54892 * 102.77695 * 37.88738 * 19 18 9 21 21 C 1.53881 * 110.03114 * 130.70985 * 9 8 3 22 22 H 1.09000 * 109.47419 * 286.49279 * 1 2 3 23 23 H 1.09006 * 109.47327 * 46.48793 * 1 2 3 24 24 H 1.09002 * 109.47759 * 166.48881 * 1 2 3 25 25 H 1.08999 * 109.46855 * 240.00430 * 2 1 3 26 26 H 1.08996 * 109.46928 * 120.00362 * 2 1 3 27 27 H 1.09003 * 109.47496 * 305.00723 * 5 3 2 28 28 H 1.09007 * 109.47076 * 65.00214 * 5 3 2 29 29 H 1.00895 * 110.99873 * 315.11425 * 8 3 2 30 30 H 0.97000 * 119.99859 * 189.75183 * 13 12 10 31 31 H 1.08997 * 110.48570 * 214.40164 * 18 9 8 32 32 H 1.09005 * 110.48530 * 337.04421 * 18 9 8 33 33 H 1.09007 * 110.71803 * 279.57610 * 19 18 9 34 34 H 1.09001 * 110.76384 * 156.22421 * 19 18 9 35 35 H 1.08998 * 110.48157 * 203.40498 * 20 19 18 36 36 H 1.08996 * 110.48528 * 80.76458 * 20 19 18 37 37 H 1.09003 * 110.03100 * 359.94628 * 21 9 8 38 38 H 1.09000 * 110.03269 * 121.37819 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 2.1625 1.7845 1.0277 5 6 3.3867 1.5073 -0.7231 6 6 3.9344 2.8697 -0.6193 7 7 4.3569 3.9211 -0.5392 8 7 1.0714 2.3044 -0.6907 9 6 -0.0615 2.6308 0.1858 10 6 -1.2938 1.8909 -0.2668 11 1 -1.7141 1.1124 0.3526 12 6 -1.8813 2.2038 -1.4742 13 7 -2.8874 1.4847 -1.9219 14 14 -1.2482 3.6489 -2.4743 15 1 -0.0430 4.2154 -1.8172 16 1 -0.8964 3.1885 -3.8416 17 1 -2.3020 4.6918 -2.5591 18 6 0.2738 2.2566 1.6443 19 6 0.7853 3.5802 2.2673 20 6 -0.1355 4.6429 1.6176 21 6 -0.3213 4.1474 0.1685 22 1 -0.3634 0.2917 0.9854 23 1 -0.3634 0.7076 -0.7453 24 1 -0.3635 -0.9992 -0.2401 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 4.0795 0.8013 -0.2650 28 1 3.2479 1.2506 -1.7733 29 1 0.7540 1.8770 -1.5478 30 1 -3.2087 1.6116 -2.8283 31 1 -0.6194 1.9106 2.1643 32 1 1.0526 1.4945 1.6733 33 1 1.8270 3.7556 1.9986 34 1 0.6607 3.5712 3.3501 35 1 0.3449 5.6212 1.6276 36 1 -1.0950 4.6827 2.1331 37 1 0.3938 4.6413 -0.4895 38 1 -1.3387 4.3482 -0.1672 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:46 Heat of formation + Delta-G solvation = 95.221516 kcal Electronic energy + Delta-G solvation = -18426.923152 eV Core-core repulsion = 15886.287060 eV Total energy + Delta-G solvation = -2540.636092 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.85471 -36.36890 -34.92623 -32.96929 -30.51574 -30.15538 -28.14404 -27.03774 -24.39522 -22.88035 -20.85393 -19.63290 -18.31705 -17.55310 -16.35890 -15.74548 -15.00982 -14.40944 -13.90001 -13.86961 -13.22232 -13.17357 -13.09871 -12.66905 -12.34849 -12.31129 -11.99296 -11.44254 -11.30379 -10.91984 -10.68508 -10.64590 -10.50810 -10.26441 -10.16721 -9.85455 -9.76201 -9.62178 -9.28011 -9.14094 -8.65911 -8.30726 -7.32642 -6.13017 -4.00083 3.22381 3.25914 3.32173 3.45893 3.58656 4.40746 4.46049 4.90455 5.15884 5.37209 5.44694 5.54957 5.57325 5.68511 5.83030 5.87410 5.92615 6.25931 6.28084 6.31136 6.37296 6.45453 6.54779 6.61471 6.63699 6.68477 6.88833 6.96945 7.04393 7.11517 7.21120 7.30585 7.47354 7.94868 8.04460 8.23933 8.30285 8.60826 8.83739 9.37500 10.91892 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.012315 C = 0.011609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.310306 B = 2273.182363 C = 2411.271071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.149 4.149 3 C 0.073 3.927 4 H 0.100 0.900 5 C -0.023 4.023 6 C 0.230 3.770 7 N -0.459 5.459 8 N -0.682 5.682 9 C 0.204 3.796 10 C -0.505 4.505 11 H 0.086 0.914 12 C 0.063 3.937 13 N -0.892 5.892 14 Si 0.819 3.181 15 H -0.192 1.192 16 H -0.296 1.296 17 H -0.291 1.291 18 C -0.135 4.135 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.113 4.113 22 H 0.054 0.946 23 H 0.170 0.830 24 H 0.018 0.982 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.341 0.659 30 H 0.265 0.735 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.634 -1.601 3.822 9.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.188 4.188 3 C -0.039 4.039 4 H 0.117 0.883 5 C -0.064 4.064 6 C -0.088 4.088 7 N -0.137 5.137 8 N -0.315 5.315 9 C 0.115 3.885 10 C -0.543 4.543 11 H 0.104 0.896 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.647 3.353 15 H -0.115 1.115 16 H -0.224 1.224 17 H -0.218 1.218 18 C -0.172 4.172 19 C -0.162 4.162 20 C -0.159 4.159 21 C -0.151 4.151 22 H 0.073 0.927 23 H 0.186 0.814 24 H 0.037 0.963 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.161 0.839 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.396 0.629 3.987 10.226 hybrid contribution -0.655 -0.787 -0.735 1.260 sum 8.741 -0.158 3.252 9.328 Atomic orbital electron populations 1.24544 0.91485 1.03483 1.07773 1.22319 1.00290 0.95984 1.00248 1.22017 0.90053 0.92748 0.99033 0.88269 1.19549 0.97461 0.85286 1.04073 1.29032 0.92000 0.95033 0.92697 1.81108 1.11253 1.11973 1.09351 1.61255 1.17122 1.45264 1.07872 1.19464 0.88655 0.91524 0.88814 1.21543 1.08421 1.18238 1.06129 0.89585 1.25032 0.93914 0.96587 0.98440 1.69851 1.25326 1.41070 1.16694 0.88068 0.83060 0.84331 0.79855 1.11455 1.22403 1.21799 1.23237 1.00633 0.96322 0.96999 1.22500 0.98768 0.96783 0.98116 1.22335 0.98674 0.97266 0.97586 1.22945 0.99957 0.97490 0.94693 0.92698 0.81376 0.96263 0.92949 0.93796 0.88032 0.87972 0.83896 0.92485 0.91851 0.90089 0.92572 0.93253 0.93430 0.92486 0.91220 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.16 6.79 37.16 0.25 -3.90 16 2 C -0.15 -2.20 5.32 -26.73 -0.14 -2.34 16 3 C 0.07 1.08 2.05 -67.71 -0.14 0.94 16 4 H 0.10 1.49 4.60 -51.93 -0.24 1.25 16 5 C -0.02 -0.27 5.21 -29.52 -0.15 -0.43 16 6 C 0.23 3.50 15.15 -20.76 -0.31 3.18 16 7 N -0.46 -8.26 18.54 42.15 0.78 -7.48 16 8 N -0.68 -12.41 4.69 -93.08 -0.44 -12.84 16 9 C 0.20 4.07 0.46 -131.63 -0.06 4.00 16 10 C -0.50 -11.93 4.73 -34.44 -0.16 -12.09 16 11 H 0.09 2.24 5.83 -52.49 -0.31 1.94 16 12 C 0.06 1.62 4.91 -17.82 -0.09 1.53 16 13 N -0.89 -24.94 13.94 55.43 0.77 -24.17 16 14 Si 0.82 19.00 23.76 -169.99 -4.04 14.96 16 15 H -0.19 -4.15 3.47 56.52 0.20 -3.95 16 16 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 18 C -0.13 -2.40 3.54 -25.03 -0.09 -2.48 16 19 C -0.12 -2.06 6.74 -24.69 -0.17 -2.23 16 20 C -0.12 -2.15 6.83 -25.07 -0.17 -2.33 16 21 C -0.11 -2.31 4.05 -25.61 -0.10 -2.41 16 22 H 0.05 1.08 4.35 -51.93 -0.23 0.85 16 23 H 0.17 3.69 2.24 -105.02 -0.24 3.45 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.70 7.84 -51.93 -0.41 0.30 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.34 6.59 5.62 -39.29 -0.22 6.37 16 30 H 0.27 7.14 8.34 -40.82 -0.34 6.80 16 31 H 0.06 1.20 7.38 -51.93 -0.38 0.82 16 32 H 0.08 1.32 3.52 -51.93 -0.18 1.14 16 33 H 0.06 0.94 7.80 -51.93 -0.41 0.54 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.47 5.93 -51.93 -0.31 1.16 16 38 H 0.06 1.26 5.30 -51.93 -0.28 0.98 16 LS Contribution 270.14 15.07 4.07 4.07 Total: -1.00 -27.66 270.14 -5.68 -33.34 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -5.49 Total: 10.67 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -1.34 Total: -18.55 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 1.12 Total: -44.49 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.04 Total: 14.96 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.66 -5.68 -33.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.562 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds