Wall clock time and date at job start Sun Mar 29 2020 21:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47092 * 2 1 4 4 H 1.08998 * 109.46637 * 90.08683 * 3 2 1 5 5 C 1.52991 * 109.47141 * 210.08549 * 3 2 1 6 6 C 1.47200 * 109.47432 * 185.00065 * 5 3 2 7 7 N 4.86387 * 125.53524 * 352.17046 * 2 1 3 8 8 N 1.46900 * 109.47156 * 330.08679 * 3 2 1 9 9 C 1.46905 * 110.99746 * 79.06488 * 8 3 2 10 10 C 1.50696 * 110.01755 * 252.09791 * 9 8 3 11 11 H 1.07998 * 120.00243 * 112.46806 * 10 9 8 12 12 C 1.37884 * 120.00137 * 292.74401 * 10 9 8 13 13 N 1.31509 * 119.99954 * 174.27016 * 12 10 9 14 14 Si 1.86803 * 119.99776 * 354.27732 * 12 10 9 15 15 H 1.48498 * 109.46958 * 4.99435 * 14 12 10 16 16 H 1.48501 * 109.47068 * 124.99802 * 14 12 10 17 17 H 1.48502 * 109.46983 * 244.99710 * 14 12 10 18 18 C 1.54266 * 110.03494 * 13.49036 * 9 8 3 19 19 C 1.54968 * 104.15879 * 95.75370 * 18 9 8 20 20 C 1.54892 * 102.77695 * 37.88738 * 19 18 9 21 21 C 1.53881 * 110.03114 * 130.70985 * 9 8 3 22 22 H 1.09000 * 109.47419 * 286.49279 * 1 2 3 23 23 H 1.09006 * 109.47327 * 46.48793 * 1 2 3 24 24 H 1.09002 * 109.47759 * 166.48881 * 1 2 3 25 25 H 1.08999 * 109.46855 * 240.00430 * 2 1 3 26 26 H 1.08996 * 109.46928 * 120.00362 * 2 1 3 27 27 H 1.09003 * 109.47496 * 305.00723 * 5 3 2 28 28 H 1.09007 * 109.47076 * 65.00214 * 5 3 2 29 29 H 1.00895 * 110.99873 * 315.11425 * 8 3 2 30 30 H 0.97000 * 119.99859 * 189.75183 * 13 12 10 31 31 H 1.08997 * 110.48570 * 214.40164 * 18 9 8 32 32 H 1.09005 * 110.48530 * 337.04421 * 18 9 8 33 33 H 1.09007 * 110.71803 * 279.57610 * 19 18 9 34 34 H 1.09001 * 110.76384 * 156.22421 * 19 18 9 35 35 H 1.08998 * 110.48157 * 203.40498 * 20 19 18 36 36 H 1.08996 * 110.48528 * 80.76458 * 20 19 18 37 37 H 1.09003 * 110.03100 * 359.94628 * 21 9 8 38 38 H 1.09000 * 110.03269 * 121.37819 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 2.1625 1.7845 1.0277 5 6 3.3867 1.5073 -0.7231 6 6 3.9344 2.8697 -0.6193 7 7 4.3569 3.9211 -0.5392 8 7 1.0714 2.3044 -0.6907 9 6 -0.0615 2.6308 0.1858 10 6 -1.2938 1.8909 -0.2668 11 1 -1.7141 1.1124 0.3526 12 6 -1.8813 2.2038 -1.4742 13 7 -2.8874 1.4847 -1.9219 14 14 -1.2482 3.6489 -2.4743 15 1 -0.0430 4.2154 -1.8172 16 1 -0.8964 3.1885 -3.8416 17 1 -2.3020 4.6918 -2.5591 18 6 0.2738 2.2566 1.6443 19 6 0.7853 3.5802 2.2673 20 6 -0.1355 4.6429 1.6176 21 6 -0.3213 4.1474 0.1685 22 1 -0.3634 0.2917 0.9854 23 1 -0.3634 0.7076 -0.7453 24 1 -0.3635 -0.9992 -0.2401 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 4.0795 0.8013 -0.2650 28 1 3.2479 1.2506 -1.7733 29 1 0.7540 1.8770 -1.5478 30 1 -3.2087 1.6116 -2.8283 31 1 -0.6194 1.9106 2.1643 32 1 1.0526 1.4945 1.6733 33 1 1.8270 3.7556 1.9986 34 1 0.6607 3.5712 3.3501 35 1 0.3449 5.6212 1.6276 36 1 -1.0950 4.6827 2.1331 37 1 0.3938 4.6413 -0.4895 38 1 -1.3387 4.3482 -0.1672 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:46 Heat of formation + Delta-G solvation = 77.141613 kcal Electronic energy + Delta-G solvation = -18427.707155 eV Core-core repulsion = 15886.287060 eV Total energy + Delta-G solvation = -2541.420095 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.33507 -37.61891 -36.27546 -34.77286 -32.00157 -31.56137 -29.65291 -28.52248 -25.92972 -24.46120 -22.22940 -21.12065 -19.85027 -18.91627 -17.81730 -17.16391 -16.73996 -15.72783 -15.32448 -15.19553 -14.87967 -14.67766 -14.49935 -14.19827 -13.93370 -13.61772 -13.33617 -13.07745 -12.74991 -12.41541 -12.26411 -11.99394 -11.89450 -11.76170 -11.67195 -11.40058 -11.29588 -11.21524 -10.87574 -10.64119 -10.31037 -10.21948 -8.84218 -8.12792 -5.96008 1.40355 1.53094 1.69076 2.07182 2.13449 2.46981 3.13094 3.38717 3.68176 4.01687 4.09183 4.23037 4.28703 4.47647 4.60298 4.76665 4.82949 4.93946 4.95881 4.97138 5.00567 5.06128 5.12214 5.19250 5.23352 5.33593 5.41086 5.48074 5.52283 5.61100 5.66819 5.69792 5.81261 6.16014 6.55535 6.69945 6.86136 6.92990 6.99038 7.42422 8.96004 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.020207 B = 0.012315 C = 0.011609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.310306 B = 2273.182363 C = 2411.271071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.139 4.139 3 C 0.072 3.928 4 H 0.104 0.896 5 C -0.017 4.017 6 C 0.249 3.751 7 N -0.513 5.513 8 N -0.686 5.686 9 C 0.204 3.796 10 C -0.469 4.469 11 H 0.054 0.946 12 C 0.014 3.986 13 N -0.947 5.947 14 Si 0.866 3.134 15 H -0.163 1.163 16 H -0.308 1.308 17 H -0.316 1.316 18 C -0.132 4.132 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.118 4.118 22 H 0.043 0.957 23 H 0.139 0.861 24 H 0.005 0.995 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.120 0.880 29 H 0.334 0.666 30 H 0.259 0.741 31 H 0.046 0.954 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.667 -2.008 5.081 12.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.178 4.178 3 C -0.039 4.039 4 H 0.121 0.879 5 C -0.057 4.057 6 C -0.067 4.067 7 N -0.191 5.191 8 N -0.318 5.318 9 C 0.114 3.886 10 C -0.508 4.508 11 H 0.072 0.928 12 C -0.183 4.183 13 N -0.588 5.588 14 Si 0.696 3.304 15 H -0.085 1.085 16 H -0.236 1.236 17 H -0.245 1.245 18 C -0.169 4.169 19 C -0.151 4.151 20 C -0.158 4.158 21 C -0.156 4.156 22 H 0.062 0.938 23 H 0.156 0.844 24 H 0.025 0.975 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.167 0.833 28 H 0.138 0.862 29 H 0.153 0.847 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 12.468 0.229 5.268 13.537 hybrid contribution -1.606 -0.750 -1.046 2.058 sum 10.862 -0.521 4.222 11.665 Atomic orbital electron populations 1.24140 0.95348 1.01510 1.05771 1.22185 0.96431 0.96505 1.02679 1.22088 0.90503 0.91950 0.99380 0.87894 1.19752 0.96190 0.84397 1.05323 1.29615 0.90768 0.95254 0.91106 1.81141 1.13059 1.13720 1.11211 1.61200 1.16492 1.46567 1.07502 1.19408 0.87727 0.90875 0.90584 1.21715 1.08597 1.16099 1.04436 0.92762 1.25506 0.94595 0.98284 0.99902 1.69976 1.28127 1.43796 1.16911 0.87415 0.82879 0.81714 0.78377 1.08532 1.23637 1.24462 1.23195 1.00723 0.97844 0.95126 1.22435 0.98441 0.94928 0.99289 1.22338 0.99376 0.98456 0.95676 1.22902 0.98264 0.97810 0.96607 0.93773 0.84389 0.97550 0.90850 0.91074 0.83297 0.86178 0.84669 0.93227 0.93500 0.87991 0.92032 0.91003 0.92009 0.92463 0.91646 0.94941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.83 6.79 71.98 0.49 -7.34 16 2 C -0.14 -3.50 5.32 30.60 0.16 -3.34 16 3 C 0.07 1.80 2.05 44.91 0.09 1.89 16 4 H 0.10 2.56 4.60 -2.39 -0.01 2.55 16 5 C -0.02 -0.30 5.21 28.79 0.15 -0.15 16 6 C 0.25 6.60 15.15 89.44 1.35 7.95 16 7 N -0.51 -17.06 18.54 20.01 0.37 -16.69 16 8 N -0.69 -23.21 4.69 -448.39 -2.10 -25.32 16 9 C 0.20 7.85 0.46 3.51 0.00 7.85 16 10 C -0.47 -22.54 4.73 25.60 0.12 -22.42 16 11 H 0.05 2.92 5.83 -2.91 -0.02 2.91 16 12 C 0.01 0.74 4.91 84.66 0.42 1.16 16 13 N -0.95 -55.50 13.94 21.45 0.30 -55.20 16 14 Si 0.87 40.58 23.76 68.60 1.63 42.21 16 15 H -0.16 -6.86 3.47 99.48 0.34 -6.51 16 16 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 17 H -0.32 -15.95 7.11 99.48 0.71 -15.24 16 18 C -0.13 -4.36 3.54 31.70 0.11 -4.25 16 19 C -0.11 -3.37 6.74 31.91 0.22 -3.15 16 20 C -0.12 -4.02 6.83 31.67 0.22 -3.81 16 21 C -0.12 -4.67 4.05 31.32 0.13 -4.54 16 22 H 0.04 1.70 4.35 -2.39 -0.01 1.69 16 23 H 0.14 6.02 2.24 -52.26 -0.12 5.91 16 24 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 25 H 0.07 1.60 7.84 -2.39 -0.02 1.58 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.33 12.31 5.62 -89.70 -0.50 11.81 16 30 H 0.26 14.73 8.34 -92.71 -0.77 13.95 16 31 H 0.05 1.71 7.38 -2.39 -0.02 1.69 16 32 H 0.10 2.95 3.52 -2.38 -0.01 2.94 16 33 H 0.06 1.80 7.80 -2.38 -0.02 1.78 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 2.64 5.93 -2.39 -0.01 2.62 16 38 H 0.03 1.43 5.30 -2.39 -0.01 1.42 16 Total: -1.00 -63.32 270.14 3.75 -59.57 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.10 Total: 25.58 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 3.46 Total: -30.15 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -1.43 Total: -97.21 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.63 Total: 42.21 kcal Total: -63.32 3.75 -59.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.713 kcal (2) G-P(sol) polarization free energy of solvation -63.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds