Wall clock time and date at job start Sun Mar 29 2020 21:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47186 * 2 1 4 4 H 1.09004 * 109.47110 * 305.44188 * 3 2 1 5 5 C 1.53002 * 109.46989 * 185.44554 * 3 2 1 6 6 C 1.47201 * 109.47042 * 173.07115 * 5 3 2 7 7 N 4.86136 * 126.28172 * 353.66127 * 2 1 3 8 8 N 1.46901 * 109.46895 * 65.44517 * 3 2 1 9 9 C 1.46848 * 110.99384 * 198.28300 * 8 3 2 10 10 C 1.53045 * 109.52189 * 174.16042 * 9 8 3 11 11 C 1.53128 * 109.27553 * 59.17807 * 10 9 8 12 12 C 1.50695 * 109.51692 * 182.44338 * 11 10 9 13 13 H 1.08003 * 120.00036 * 119.68739 * 12 11 10 14 14 C 1.37880 * 120.00183 * 299.67875 * 12 11 10 15 15 N 1.31510 * 119.99639 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00145 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47208 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47343 * 119.99898 * 16 14 12 19 19 H 1.48504 * 109.47018 * 240.00408 * 16 14 12 20 20 C 1.53115 * 109.15871 * 302.34417 * 11 10 9 21 21 C 1.46842 * 110.99962 * 74.07453 * 8 3 2 22 22 H 1.08994 * 109.47171 * 294.99813 * 1 2 3 23 23 H 1.08997 * 109.47219 * 174.99506 * 1 2 3 24 24 H 1.09005 * 109.47392 * 54.99728 * 1 2 3 25 25 H 1.09002 * 109.46677 * 119.99994 * 2 1 3 26 26 H 1.08999 * 109.47053 * 239.99837 * 2 1 3 27 27 H 1.09002 * 109.46939 * 293.07212 * 5 3 2 28 28 H 1.08997 * 109.47163 * 53.07144 * 5 3 2 29 29 H 1.08997 * 109.46247 * 294.17411 * 9 8 3 30 30 H 1.08999 * 109.46896 * 54.14769 * 9 8 3 31 31 H 1.09001 * 109.50178 * 299.24317 * 10 9 8 32 32 H 1.08998 * 109.50441 * 179.11832 * 10 9 8 33 33 H 1.08993 * 109.52054 * 62.25045 * 11 10 9 34 34 H 0.97003 * 119.99724 * 180.02562 * 15 14 12 35 35 H 1.08997 * 109.50972 * 297.71758 * 20 11 10 36 36 H 1.09005 * 109.50349 * 177.59392 * 20 11 10 37 37 H 1.08999 * 109.46137 * 305.85128 * 21 8 3 38 38 H 1.08998 * 109.46604 * 65.82230 * 21 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9837 -0.8373 5 6 3.5639 1.4446 -0.1369 6 6 4.0396 2.8276 -0.3039 7 7 4.4067 3.8949 -0.4327 8 7 1.6606 2.0960 1.2598 9 6 1.7350 3.5575 1.1376 10 6 1.1960 4.2056 2.4149 11 6 2.0261 3.7317 3.6113 12 6 1.4628 4.3195 4.8794 13 1 1.1016 3.6689 5.6621 14 6 1.4087 5.6878 5.0404 15 7 1.8483 6.4799 4.0871 16 14 0.7111 6.4163 6.6126 17 1 0.2871 5.3202 7.5206 18 1 1.7511 7.2390 7.2810 19 1 -0.4603 7.2687 6.2860 20 6 1.9713 2.2034 3.6872 21 6 2.4878 1.6134 2.3729 22 1 -0.3633 0.4343 0.9313 23 1 -0.3633 -1.0237 -0.0897 24 1 -0.3634 0.5895 -0.8418 25 1 1.8932 -0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 4.0097 1.0127 0.7591 28 1 3.8514 0.8540 -1.0067 29 1 2.7723 3.8571 0.9881 30 1 1.1371 3.8817 0.2858 31 1 0.1545 3.9174 2.5577 32 1 1.2659 5.2900 2.3302 33 1 3.0601 4.0534 3.4874 34 1 1.8106 7.4425 4.2006 35 1 0.9420 1.8838 3.8499 36 1 2.5951 1.8574 4.5114 37 1 2.4367 0.5255 2.4183 38 1 3.5215 1.9221 2.2177 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:11 Heat of formation + Delta-G solvation = -0.990962 kcal Electronic energy + Delta-G solvation = -17502.768283 eV Core-core repulsion = 14957.960105 eV Total energy + Delta-G solvation = -2544.808178 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.73124 -37.63306 -36.60872 -34.42313 -32.30859 -31.50816 -30.73191 -27.57704 -25.33597 -24.10192 -23.34995 -21.08261 -20.15585 -18.49158 -18.35693 -17.17076 -16.63418 -16.12317 -15.65296 -15.22442 -14.83515 -14.69937 -14.23857 -13.99770 -13.86872 -13.71852 -13.60631 -13.03856 -13.01276 -12.87621 -12.69822 -12.44170 -12.24789 -12.11641 -11.92280 -11.64288 -11.47216 -11.39531 -11.32179 -10.73231 -10.65316 -10.39110 -9.02484 -8.09728 -6.24376 1.37044 1.38359 1.50375 1.78376 1.84607 2.41294 3.06842 3.10330 3.17188 3.93977 4.15744 4.19135 4.35244 4.38604 4.51197 4.59662 4.67147 4.72183 4.80498 4.88447 4.90689 4.97364 5.08097 5.09612 5.25072 5.28392 5.36880 5.38263 5.54773 5.58395 5.62760 5.77217 6.00156 6.04771 6.31754 6.38957 6.44403 6.64270 6.90099 7.44286 8.94485 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.030921 B = 0.007069 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.312360 B = 3959.853718 C = 4438.569381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C 0.084 3.916 4 H 0.082 0.918 5 C -0.065 4.065 6 C 0.225 3.775 7 N -0.503 5.503 8 N -0.524 5.524 9 C 0.058 3.942 10 C -0.093 4.093 11 C 0.046 3.954 12 C -0.531 4.531 13 H 0.055 0.945 14 C 0.007 3.993 15 N -0.922 5.922 16 Si 0.954 3.046 17 H -0.263 1.263 18 H -0.282 1.282 19 H -0.281 1.281 20 C -0.100 4.100 21 C 0.060 3.940 22 H 0.041 0.959 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.128 0.872 28 H 0.160 0.840 29 H 0.021 0.979 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.047 0.953 33 H -0.024 1.024 34 H 0.257 0.743 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.109 0.891 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 -16.715 -9.355 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.026 4.026 4 H 0.100 0.900 5 C -0.106 4.106 6 C -0.091 4.091 7 N -0.181 5.181 8 N -0.249 5.249 9 C -0.070 4.070 10 C -0.132 4.132 11 C 0.028 3.972 12 C -0.569 4.569 13 H 0.073 0.927 14 C -0.191 4.191 15 N -0.562 5.562 16 Si 0.780 3.220 17 H -0.187 1.187 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.138 4.138 21 C -0.067 4.067 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.145 0.855 28 H 0.178 0.822 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.066 0.934 33 H -0.005 1.005 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.168 -15.063 -9.481 17.799 hybrid contribution 0.396 1.349 0.861 1.648 sum 0.563 -13.714 -8.620 16.208 Atomic orbital electron populations 1.21620 0.95985 1.01115 1.01389 1.21507 0.96093 0.92161 1.03944 1.22061 0.90363 0.98258 0.91947 0.89991 1.20545 0.98351 0.83155 1.08531 1.29967 0.91868 0.95795 0.91474 1.81285 1.11487 1.14208 1.11147 1.62095 1.54321 1.04063 1.04383 1.22208 0.98330 0.88619 0.97879 1.21376 0.97933 0.99691 0.94186 1.18624 0.92916 0.92380 0.93309 1.21681 1.40522 0.91855 1.02806 0.92720 1.25825 0.95859 0.97926 0.99498 1.70077 1.48268 1.03558 1.34300 0.85559 0.77967 0.78455 0.80012 1.18679 1.20847 1.20736 1.21541 1.00383 0.95643 0.96266 1.22206 0.93616 1.00658 0.90253 0.93936 0.91985 0.93610 0.90559 0.88208 0.85457 0.82212 0.96057 0.92668 0.94993 0.93420 1.00540 0.93359 0.92733 0.92866 0.87303 0.95818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.75 71.98 0.70 -1.76 16 2 C -0.10 -1.33 5.44 30.59 0.17 -1.16 16 3 C 0.08 1.66 1.92 44.92 0.09 1.75 16 4 H 0.08 1.72 7.81 -2.39 -0.02 1.70 16 5 C -0.06 -1.08 4.71 28.79 0.14 -0.94 16 6 C 0.22 6.48 12.32 89.44 1.10 7.59 16 7 N -0.50 -19.05 17.60 20.01 0.35 -18.70 16 8 N -0.52 -15.83 4.11 -871.09 -3.58 -19.41 16 9 C 0.06 2.33 4.82 86.33 0.42 2.74 16 10 C -0.09 -4.70 5.12 30.65 0.16 -4.55 16 11 C 0.05 2.40 2.16 -11.46 -0.02 2.38 16 12 C -0.53 -30.38 8.56 25.60 0.22 -30.16 16 13 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 14 C 0.01 0.39 5.31 84.66 0.45 0.84 16 15 N -0.92 -56.66 11.37 21.45 0.24 -56.42 16 16 Si 0.95 45.41 29.54 68.60 2.03 47.44 16 17 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 C -0.10 -4.04 5.32 30.65 0.16 -3.88 16 21 C 0.06 1.80 4.29 86.33 0.37 2.17 16 22 H 0.04 0.97 7.91 -2.39 -0.02 0.95 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.08 0.94 6.59 -2.39 -0.02 0.93 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.13 1.87 6.01 -2.39 -0.01 1.86 16 28 H 0.16 1.14 8.13 -2.39 -0.02 1.12 16 29 H 0.02 0.93 4.60 -2.39 -0.01 0.92 16 30 H 0.05 2.14 7.94 -2.39 -0.02 2.12 16 31 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 2.79 6.17 -2.39 -0.01 2.77 16 33 H -0.02 -1.40 8.14 -2.39 -0.02 -1.42 16 34 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.11 2.37 6.54 -2.39 -0.02 2.36 16 38 H 0.02 0.74 6.21 -2.39 -0.01 0.72 16 Total: -1.00 -72.79 294.62 4.01 -68.77 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.03 Total: 3.30 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 3.94 Total: -24.98 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -2.98 Total: -94.53 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -72.79 4.01 -68.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.782 kcal (2) G-P(sol) polarization free energy of solvation -72.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds