Wall clock time and date at job start Sun Mar 29 2020 21:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47038 * 2 1 4 4 H 1.09002 * 109.47136 * 54.85816 * 3 2 1 5 5 C 1.52996 * 109.47521 * 174.86333 * 3 2 1 6 6 C 1.47200 * 109.47241 * 187.25370 * 5 3 2 7 7 N 4.86088 * 126.29659 * 6.43226 * 2 1 3 8 8 N 1.46903 * 109.47101 * 294.86286 * 3 2 1 9 9 C 1.46841 * 110.99905 * 289.09624 * 8 3 2 10 10 C 1.53039 * 109.52545 * 174.16221 * 9 8 3 11 11 C 1.53122 * 109.31309 * 59.15331 * 10 9 8 12 12 C 1.53121 * 109.15741 * 302.41173 * 11 10 9 13 13 H 1.09001 * 109.50489 * 297.63089 * 12 11 10 14 14 C 1.50709 * 109.50212 * 177.55320 * 12 11 10 15 15 H 1.08001 * 119.99710 * 240.15524 * 14 12 11 16 16 C 1.37871 * 119.99759 * 60.15724 * 14 12 11 17 17 N 1.31512 * 120.00575 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99834 * 180.02562 * 16 14 12 19 19 H 1.48489 * 109.47341 * 89.99466 * 18 16 14 20 20 H 1.48505 * 109.47092 * 210.00137 * 18 16 14 21 21 H 1.48503 * 109.46819 * 329.99383 * 18 16 14 22 22 C 1.46854 * 110.99887 * 164.88372 * 8 3 2 23 23 H 1.09005 * 109.47431 * 61.00886 * 1 2 3 24 24 H 1.09000 * 109.46800 * 181.01098 * 1 2 3 25 25 H 1.09003 * 109.47462 * 301.01037 * 1 2 3 26 26 H 1.08999 * 109.47397 * 240.00574 * 2 1 3 27 27 H 1.08998 * 109.47744 * 119.99671 * 2 1 3 28 28 H 1.09004 * 109.46729 * 307.25015 * 5 3 2 29 29 H 1.09004 * 109.47073 * 67.25033 * 5 3 2 30 30 H 1.08995 * 109.46605 * 54.13860 * 9 8 3 31 31 H 1.09009 * 109.45947 * 294.17367 * 9 8 3 32 32 H 1.08994 * 109.50452 * 179.11764 * 10 9 8 33 33 H 1.09000 * 109.49977 * 299.19619 * 10 9 8 34 34 H 1.09003 * 109.51865 * 62.27057 * 11 10 9 35 35 H 1.08999 * 109.52499 * 182.46441 * 11 10 9 36 36 H 0.96994 * 120.00173 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46045 * 305.85156 * 22 8 3 38 38 H 1.08997 * 109.46327 * 65.82691 * 22 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6033 1.9823 0.8404 5 6 3.5644 1.4446 0.1291 6 6 4.0402 2.8266 0.3040 7 7 4.4074 3.8930 0.4389 8 7 1.6541 2.0983 -1.2567 9 6 2.4239 1.5637 -2.3871 10 6 1.8967 2.1619 -3.6934 11 6 2.0247 3.6868 -3.6401 12 6 1.2550 4.2136 -2.4257 13 1 0.1971 3.9741 -2.5335 14 6 1.4255 5.7080 -2.3315 15 1 1.8781 6.1455 -1.4539 16 6 1.0038 6.5165 -3.3656 17 7 0.4532 5.9837 -4.4344 18 14 1.2159 8.3688 -3.2491 19 1 2.5335 8.7529 -3.8159 20 1 0.1336 9.0400 -4.0130 21 1 1.1489 8.7861 -1.8254 22 6 1.8009 3.5560 -1.1562 23 1 -0.3634 0.4981 -0.8989 24 1 -0.3633 -1.0275 0.0181 25 1 -0.3634 0.5294 0.8808 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8566 0.8477 0.9932 29 1 4.0060 1.0196 -0.7723 30 1 2.3204 0.4791 -2.4165 31 1 3.4753 1.8249 -2.2664 32 1 2.4785 1.7769 -4.5308 33 1 0.8493 1.8890 -3.8219 34 1 3.0760 3.9611 -3.5513 35 1 1.6101 4.1193 -4.5506 36 1 0.1569 6.5525 -5.1621 37 1 1.2447 3.9183 -0.2916 38 1 2.8551 3.8078 -1.0413 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:36 Heat of formation + Delta-G solvation = 0.051777 kcal Electronic energy + Delta-G solvation = -17602.053598 eV Core-core repulsion = 15057.290637 eV Total energy + Delta-G solvation = -2544.762961 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73461 -37.57391 -36.59090 -34.49929 -32.30364 -31.64568 -30.72652 -26.98256 -25.88597 -23.99954 -23.39602 -21.07205 -20.13533 -18.60642 -18.18763 -17.13498 -16.61210 -16.16748 -15.61752 -15.34991 -14.82262 -14.70118 -14.24586 -13.97925 -13.82394 -13.66229 -13.58998 -13.17212 -12.96787 -12.88378 -12.73822 -12.56803 -12.35971 -11.93873 -11.90442 -11.69330 -11.46158 -11.37083 -11.30215 -10.78009 -10.68538 -10.39421 -8.96191 -8.13393 -6.26728 1.32596 1.33102 1.43813 1.81588 1.87271 2.36754 3.11407 3.12516 3.14774 3.95410 4.17284 4.19431 4.33607 4.39031 4.52373 4.63475 4.66832 4.70895 4.79693 4.86030 4.93237 4.99458 5.06300 5.13047 5.19539 5.29810 5.36889 5.42373 5.51961 5.54391 5.61223 5.77318 5.97170 6.12970 6.21692 6.44126 6.49383 6.67473 6.85838 7.40475 8.90651 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027301 B = 0.007775 C = 0.006948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.367839 B = 3600.311959 C = 4028.867232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C 0.083 3.917 4 H 0.074 0.926 5 C -0.063 4.063 6 C 0.223 3.777 7 N -0.502 5.502 8 N -0.533 5.533 9 C 0.059 3.941 10 C -0.112 4.112 11 C -0.102 4.102 12 C 0.055 3.945 13 H -0.003 1.003 14 C -0.538 4.538 15 H 0.035 0.965 16 C 0.018 3.982 17 N -0.910 5.910 18 Si 0.946 3.054 19 H -0.277 1.277 20 H -0.275 1.275 21 H -0.275 1.275 22 C 0.072 3.928 23 H 0.041 0.959 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.160 0.840 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.011 0.989 35 H 0.055 0.945 36 H 0.261 0.739 37 H 0.035 0.965 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.773 -16.936 7.233 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.027 4.027 4 H 0.093 0.907 5 C -0.104 4.104 6 C -0.092 4.092 7 N -0.180 5.180 8 N -0.257 5.257 9 C -0.068 4.068 10 C -0.150 4.150 11 C -0.141 4.141 12 C 0.037 3.963 13 H 0.015 0.985 14 C -0.576 4.576 15 H 0.053 0.947 16 C -0.181 4.181 17 N -0.549 5.549 18 Si 0.772 3.228 19 H -0.203 1.203 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.056 4.056 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.118 0.882 28 H 0.177 0.823 29 H 0.149 0.851 30 H 0.129 0.871 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.747 -15.392 7.184 17.394 hybrid contribution 0.559 1.724 -0.157 1.819 sum 4.306 -13.669 7.027 15.961 Atomic orbital electron populations 1.21634 0.96197 1.01160 1.01282 1.21516 0.95928 0.92067 1.04106 1.22030 0.90471 0.98153 0.92066 0.90745 1.20527 0.98158 0.83199 1.08555 1.29948 0.91925 0.95804 0.91553 1.81286 1.11678 1.14018 1.11048 1.62067 1.56293 1.03427 1.03928 1.22201 0.94381 1.00444 0.89762 1.21592 1.00897 0.95044 0.97420 1.21430 0.96738 0.94764 1.01133 1.18542 0.94073 0.92353 0.91369 0.98490 1.21481 1.39863 0.93702 1.02601 0.94696 1.25627 0.94811 1.02531 0.95144 1.70007 1.41474 1.36116 1.07326 0.85740 0.77972 0.81046 0.78020 1.20285 1.19971 1.20024 1.22148 0.97908 0.87455 0.98089 0.94004 0.91803 0.93874 0.90136 0.88209 0.82297 0.85125 0.87111 0.95148 0.91150 0.92850 0.97013 0.92689 0.92939 0.94654 0.95556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.79 71.98 0.70 -2.01 16 2 C -0.10 -1.41 5.40 30.59 0.17 -1.24 16 3 C 0.08 1.79 1.94 44.91 0.09 1.87 16 4 H 0.07 1.80 7.87 -2.39 -0.02 1.78 16 5 C -0.06 -1.09 4.74 28.79 0.14 -0.96 16 6 C 0.22 6.65 12.36 89.44 1.11 7.76 16 7 N -0.50 -19.54 17.61 20.01 0.35 -19.19 16 8 N -0.53 -16.96 4.04 -871.10 -3.52 -20.48 16 9 C 0.06 1.68 4.41 86.33 0.38 2.06 16 10 C -0.11 -4.08 6.09 30.65 0.19 -3.89 16 11 C -0.10 -5.03 5.03 30.68 0.15 -4.87 16 12 C 0.06 2.95 2.26 -11.48 -0.03 2.92 16 13 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 14 C -0.54 -32.16 8.56 25.60 0.22 -31.94 16 15 H 0.03 2.14 7.74 -2.91 -0.02 2.12 16 16 C 0.02 1.05 5.30 84.65 0.45 1.50 16 17 N -0.91 -54.65 11.36 21.44 0.24 -54.41 16 18 Si 0.95 46.62 29.54 68.60 2.03 48.65 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 22 C 0.07 3.14 3.95 86.32 0.34 3.48 16 23 H 0.04 1.04 7.79 -2.38 -0.02 1.02 16 24 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.08 0.98 6.44 -2.39 -0.02 0.96 16 27 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.16 1.24 8.13 -2.39 -0.02 1.22 16 29 H 0.13 1.85 5.99 -2.38 -0.01 1.83 16 30 H 0.11 2.22 6.37 -2.39 -0.02 2.21 16 31 H 0.03 0.86 6.35 -2.38 -0.02 0.84 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 3.06 6.16 -2.39 -0.01 3.05 16 36 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 37 H 0.03 1.63 7.96 -2.39 -0.02 1.61 16 38 H 0.03 1.20 4.52 -2.39 -0.01 1.18 16 Total: -1.00 -73.42 294.34 4.03 -69.39 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: 1.03 Total: 1.34 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 3.90 Total: -25.31 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -2.93 Total: -94.07 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -73.42 4.03 -69.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.441 kcal (2) G-P(sol) polarization free energy of solvation -73.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds