Wall clock time and date at job start Sun Mar 29 2020 21:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 H 1.08999 * 109.47036 * 303.63516 * 3 2 1 5 5 C 1.53002 * 109.47112 * 183.63592 * 3 2 1 6 6 C 1.47204 * 109.47134 * 172.69682 * 5 3 2 7 7 N 4.86078 * 126.45017 * 354.07313 * 2 1 3 8 8 N 1.46894 * 109.47015 * 63.63895 * 3 2 1 9 9 C 1.46852 * 111.00031 * 70.76912 * 8 3 2 10 10 C 1.53041 * 109.52134 * 185.83766 * 9 8 3 11 11 C 1.53116 * 109.28032 * 300.82100 * 10 9 8 12 12 C 1.53092 * 109.15856 * 57.65347 * 11 10 9 13 13 H 1.09000 * 109.50379 * 62.28606 * 12 11 10 14 14 C 1.50700 * 109.49352 * 182.39979 * 12 11 10 15 15 H 1.08001 * 120.00029 * 119.80825 * 14 12 11 16 16 C 1.37876 * 119.99787 * 299.81470 * 14 12 11 17 17 N 1.31510 * 120.00256 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 119.99697 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46908 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46918 * 119.99666 * 18 16 14 21 21 H 1.48501 * 109.46956 * 239.99396 * 18 16 14 22 22 C 1.46851 * 111.00010 * 194.97431 * 8 3 2 23 23 H 1.09005 * 109.47517 * 299.99742 * 1 2 3 24 24 H 1.08998 * 109.47308 * 60.00248 * 1 2 3 25 25 H 1.09005 * 109.47501 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47391 * 239.99630 * 2 1 3 27 27 H 1.09009 * 109.47441 * 120.00175 * 2 1 3 28 28 H 1.08993 * 109.47682 * 292.70481 * 5 3 2 29 29 H 1.09004 * 109.46684 * 52.70485 * 5 3 2 30 30 H 1.09000 * 109.46382 * 305.85320 * 9 8 3 31 31 H 1.08998 * 109.46156 * 65.83381 * 9 8 3 32 32 H 1.08997 * 109.50080 * 60.76161 * 10 9 8 33 33 H 1.09001 * 109.50171 * 180.83865 * 10 9 8 34 34 H 1.08998 * 109.52198 * 177.56430 * 11 10 9 35 35 H 1.09002 * 109.51710 * 297.74761 * 11 10 9 36 36 H 0.97003 * 120.00217 * 180.02562 * 17 16 14 37 37 H 1.08995 * 109.46581 * 294.17764 * 22 8 3 38 38 H 1.09000 * 109.46094 * 54.15691 * 22 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6244 1.9748 -0.8556 5 6 3.5672 1.4434 -0.0915 6 6 4.0473 2.8238 -0.2678 7 7 4.4178 3.8890 -0.4037 8 7 1.6233 2.1091 1.2409 9 6 2.3627 1.5822 2.3952 10 6 1.8033 2.1920 3.6825 11 6 1.9368 3.7160 3.6197 12 6 1.1990 4.2344 2.3825 13 1 0.1384 3.9973 2.4654 14 6 1.3752 5.7276 2.2809 15 1 1.8510 6.1574 1.4118 16 6 0.9289 6.5452 3.2975 17 7 0.3491 6.0220 4.3556 18 14 1.1479 8.3961 3.1718 19 1 1.8245 8.7287 1.8925 20 1 -0.1818 9.0559 3.2153 21 1 1.9754 8.8748 4.3081 22 6 1.7759 3.5656 1.1327 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.9864 1.0271 0.8244 29 1 3.8805 0.8384 -0.9423 30 1 2.2560 0.4980 2.4306 31 1 3.4173 1.8404 2.2996 32 1 0.7521 1.9228 3.7858 33 1 2.3620 1.8121 4.5379 34 1 1.5003 4.1572 4.5158 35 1 2.9907 3.9869 3.5556 36 1 0.0348 6.5972 5.0707 37 1 2.8333 3.8144 1.0429 38 1 1.2429 3.9221 0.2512 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:39 Heat of formation + Delta-G solvation = 19.938029 kcal Electronic energy + Delta-G solvation = -17605.344808 eV Core-core repulsion = 15061.444179 eV Total energy + Delta-G solvation = -2543.900629 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.42793 -36.13682 -35.17582 -32.64795 -31.07580 -30.02087 -29.37836 -24.98025 -24.73351 -22.68256 -21.73743 -19.76297 -18.55036 -17.26361 -16.51042 -15.68449 -14.89806 -14.69956 -14.32465 -14.06758 -13.44963 -13.00142 -12.89254 -12.60319 -12.44549 -12.17808 -12.09209 -11.87768 -11.59774 -11.38062 -11.05398 -10.91490 -10.87012 -10.74351 -10.53741 -10.35865 -10.01315 -9.76519 -9.44174 -8.99997 -8.66725 -8.26914 -7.61414 -5.93737 -3.98719 3.01056 3.05020 3.32891 3.40682 3.46592 4.14592 4.34540 4.53955 4.90683 5.16215 5.19464 5.36413 5.38737 5.47616 5.56504 5.71718 5.79428 5.89088 5.98829 6.05797 6.12333 6.27231 6.37148 6.43872 6.51490 6.63008 6.71282 6.77846 6.99984 7.22956 7.41452 7.63525 7.77639 7.82679 7.83546 8.11293 8.20682 8.53183 9.05540 9.65493 11.12318 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027311 B = 0.007789 C = 0.006949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.999205 B = 3594.045641 C = 4028.422189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.085 3.915 4 H 0.085 0.915 5 C -0.066 4.066 6 C 0.201 3.799 7 N -0.425 5.425 8 N -0.525 5.525 9 C 0.056 3.944 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.057 3.943 13 H 0.033 0.967 14 C -0.511 4.511 15 H 0.052 0.948 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.053 3.947 23 H 0.072 0.928 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.064 0.936 31 H 0.025 0.975 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.027 0.973 36 H 0.258 0.742 37 H 0.034 0.966 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 -14.172 -6.261 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C -0.026 4.026 4 H 0.103 0.897 5 C -0.108 4.108 6 C -0.116 4.116 7 N -0.102 5.102 8 N -0.249 5.249 9 C -0.072 4.072 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.039 3.961 13 H 0.051 0.949 14 C -0.550 4.550 15 H 0.070 0.930 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.715 3.285 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.074 4.074 23 H 0.091 0.909 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.012 -12.608 -6.225 14.380 hybrid contribution 0.891 0.878 -0.053 1.252 sum 3.904 -11.730 -6.279 13.866 Atomic orbital electron populations 1.21632 0.94876 1.00484 1.03093 1.21511 0.97251 0.94376 1.01538 1.21872 0.88929 0.96646 0.95127 0.89674 1.20142 0.99807 0.85624 1.05247 1.28927 0.93727 0.95124 0.93804 1.81272 1.09200 1.11475 1.08268 1.62181 1.55419 1.06284 1.00971 1.22153 0.94902 0.98274 0.91871 1.21667 1.00547 0.98972 0.94288 1.21641 0.98751 0.90850 1.03623 1.18628 0.95789 0.93316 0.88400 0.94855 1.21193 1.38228 0.91379 1.04154 0.92960 1.24909 0.95111 0.98360 0.95422 1.69896 1.40201 1.34576 1.08158 0.86606 0.77739 0.86100 0.78011 1.19875 1.21017 1.21098 1.22617 0.99306 0.84143 1.01342 0.90870 0.93285 0.93737 0.92010 0.91625 0.87274 0.87492 0.91759 0.95690 0.92014 0.93585 0.89146 0.95421 0.93194 0.94793 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.79 37.15 0.36 -1.20 16 2 C -0.11 -1.06 5.39 -26.74 -0.14 -1.20 16 3 C 0.09 1.06 1.96 -67.71 -0.13 0.93 16 4 H 0.09 1.12 7.87 -51.93 -0.41 0.71 16 5 C -0.07 -0.72 4.74 -29.52 -0.14 -0.86 16 6 C 0.20 3.16 12.36 -20.76 -0.26 2.90 16 7 N -0.43 -8.19 17.62 42.15 0.74 -7.45 16 8 N -0.53 -8.73 3.96 -226.68 -0.90 -9.63 16 9 C 0.06 0.88 4.42 -3.83 -0.02 0.86 16 10 C -0.12 -2.19 6.09 -26.65 -0.16 -2.36 16 11 C -0.11 -2.63 5.02 -26.62 -0.13 -2.76 16 12 C 0.06 1.46 2.26 -91.70 -0.21 1.25 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.51 -14.54 8.56 -34.44 -0.29 -14.84 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 17 N -0.89 -25.80 11.36 55.43 0.63 -25.17 16 18 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 19 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 C 0.05 1.12 3.95 -3.83 -0.02 1.11 16 23 H 0.07 0.97 7.71 -51.93 -0.40 0.57 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.61 6.48 -51.92 -0.34 0.28 16 28 H 0.11 1.09 5.99 -51.93 -0.31 0.78 16 29 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.83 6.38 -51.93 -0.33 0.50 16 31 H 0.03 0.40 6.35 -51.93 -0.33 0.07 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 37 H 0.03 0.75 4.52 -51.93 -0.23 0.52 16 38 H 0.05 1.21 7.97 -51.93 -0.41 0.80 16 LS Contribution 294.26 15.07 4.43 4.43 Total: -1.00 -30.90 294.26 -7.36 -38.26 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -6.01 Total: -3.06 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -1.23 Total: -14.48 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.47 Total: -42.25 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.90 -7.36 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.199 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds