Wall clock time and date at job start Sun Mar 29 2020 21:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 H 1.08999 * 109.47036 * 303.63516 * 3 2 1 5 5 C 1.53002 * 109.47112 * 183.63592 * 3 2 1 6 6 C 1.47204 * 109.47134 * 172.69682 * 5 3 2 7 7 N 4.86078 * 126.45017 * 354.07313 * 2 1 3 8 8 N 1.46894 * 109.47015 * 63.63895 * 3 2 1 9 9 C 1.46852 * 111.00031 * 70.76912 * 8 3 2 10 10 C 1.53041 * 109.52134 * 185.83766 * 9 8 3 11 11 C 1.53116 * 109.28032 * 300.82100 * 10 9 8 12 12 C 1.53092 * 109.15856 * 57.65347 * 11 10 9 13 13 H 1.09000 * 109.50379 * 62.28606 * 12 11 10 14 14 C 1.50700 * 109.49352 * 182.39979 * 12 11 10 15 15 H 1.08001 * 120.00029 * 119.80825 * 14 12 11 16 16 C 1.37876 * 119.99787 * 299.81470 * 14 12 11 17 17 N 1.31510 * 120.00256 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 119.99697 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46908 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46918 * 119.99666 * 18 16 14 21 21 H 1.48501 * 109.46956 * 239.99396 * 18 16 14 22 22 C 1.46851 * 111.00010 * 194.97431 * 8 3 2 23 23 H 1.09005 * 109.47517 * 299.99742 * 1 2 3 24 24 H 1.08998 * 109.47308 * 60.00248 * 1 2 3 25 25 H 1.09005 * 109.47501 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47391 * 239.99630 * 2 1 3 27 27 H 1.09009 * 109.47441 * 120.00175 * 2 1 3 28 28 H 1.08993 * 109.47682 * 292.70481 * 5 3 2 29 29 H 1.09004 * 109.46684 * 52.70485 * 5 3 2 30 30 H 1.09000 * 109.46382 * 305.85320 * 9 8 3 31 31 H 1.08998 * 109.46156 * 65.83381 * 9 8 3 32 32 H 1.08997 * 109.50080 * 60.76161 * 10 9 8 33 33 H 1.09001 * 109.50171 * 180.83865 * 10 9 8 34 34 H 1.08998 * 109.52198 * 177.56430 * 11 10 9 35 35 H 1.09002 * 109.51710 * 297.74761 * 11 10 9 36 36 H 0.97003 * 120.00217 * 180.02562 * 17 16 14 37 37 H 1.08995 * 109.46581 * 294.17764 * 22 8 3 38 38 H 1.09000 * 109.46094 * 54.15691 * 22 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6244 1.9748 -0.8556 5 6 3.5672 1.4434 -0.0915 6 6 4.0473 2.8238 -0.2678 7 7 4.4178 3.8890 -0.4037 8 7 1.6233 2.1091 1.2409 9 6 2.3627 1.5822 2.3952 10 6 1.8033 2.1920 3.6825 11 6 1.9368 3.7160 3.6197 12 6 1.1990 4.2344 2.3825 13 1 0.1384 3.9973 2.4654 14 6 1.3752 5.7276 2.2809 15 1 1.8510 6.1574 1.4118 16 6 0.9289 6.5452 3.2975 17 7 0.3491 6.0220 4.3556 18 14 1.1479 8.3961 3.1718 19 1 1.8245 8.7287 1.8925 20 1 -0.1818 9.0559 3.2153 21 1 1.9754 8.8748 4.3081 22 6 1.7759 3.5656 1.1327 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.9864 1.0271 0.8244 29 1 3.8805 0.8384 -0.9423 30 1 2.2560 0.4980 2.4306 31 1 3.4173 1.8404 2.2996 32 1 0.7521 1.9228 3.7858 33 1 2.3620 1.8121 4.5379 34 1 1.5003 4.1572 4.5158 35 1 2.9907 3.9869 3.5556 36 1 0.0348 6.5972 5.0707 37 1 2.8333 3.8144 1.0429 38 1 1.2429 3.9221 0.2512 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173249.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:38 Heat of formation + Delta-G solvation = 0.131920 kcal Electronic energy + Delta-G solvation = -17606.203665 eV Core-core repulsion = 15061.444179 eV Total energy + Delta-G solvation = -2544.759486 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.73694 -37.57496 -36.59288 -34.49758 -32.30046 -31.64124 -30.73122 -26.98236 -25.88481 -24.00183 -23.39484 -21.07173 -20.13328 -18.60570 -18.19055 -17.13545 -16.61060 -16.16684 -15.62146 -15.34955 -14.82209 -14.70660 -14.24164 -13.97902 -13.82026 -13.66415 -13.59284 -13.17189 -12.96954 -12.88579 -12.72436 -12.57145 -12.35725 -11.94778 -11.90325 -11.68760 -11.46319 -11.37050 -11.30038 -10.77909 -10.67848 -10.39579 -8.96147 -8.13619 -6.26824 1.31481 1.33047 1.44999 1.81611 1.87298 2.36736 3.11384 3.12356 3.14873 3.95446 4.17388 4.19412 4.33747 4.39068 4.52433 4.63546 4.66887 4.70895 4.79969 4.86153 4.93250 4.99575 5.06302 5.13092 5.19741 5.29998 5.37005 5.42464 5.52147 5.54529 5.61206 5.78164 5.97155 6.12960 6.21705 6.44189 6.49410 6.67512 6.85914 7.40449 8.90606 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027311 B = 0.007789 C = 0.006949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.999205 B = 3594.045641 C = 4028.422189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C 0.083 3.917 4 H 0.074 0.926 5 C -0.063 4.063 6 C 0.223 3.777 7 N -0.502 5.502 8 N -0.533 5.533 9 C 0.059 3.941 10 C -0.112 4.112 11 C -0.102 4.102 12 C 0.055 3.945 13 H -0.003 1.003 14 C -0.537 4.537 15 H 0.034 0.966 16 C 0.018 3.982 17 N -0.910 5.910 18 Si 0.947 3.053 19 H -0.278 1.278 20 H -0.273 1.273 21 H -0.276 1.276 22 C 0.072 3.928 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.131 0.869 29 H 0.160 0.840 30 H 0.111 0.889 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.011 0.989 36 H 0.261 0.739 37 H 0.026 0.974 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.921 -17.004 -6.963 18.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.027 4.027 4 H 0.093 0.907 5 C -0.104 4.104 6 C -0.092 4.092 7 N -0.181 5.181 8 N -0.257 5.257 9 C -0.068 4.068 10 C -0.150 4.150 11 C -0.141 4.141 12 C 0.036 3.964 13 H 0.015 0.985 14 C -0.575 4.575 15 H 0.053 0.947 16 C -0.181 4.181 17 N -0.549 5.549 18 Si 0.773 3.227 19 H -0.203 1.203 20 H -0.199 1.199 21 H -0.202 1.202 22 C -0.056 4.056 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.149 0.851 29 H 0.177 0.823 30 H 0.129 0.871 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.899 -15.460 -6.931 17.385 hybrid contribution 0.548 1.723 0.157 1.815 sum 4.447 -13.736 -6.774 15.949 Atomic orbital electron populations 1.21630 0.96197 1.01142 1.01309 1.21513 0.95934 0.92050 1.04107 1.22023 0.90231 0.98066 0.92401 0.90744 1.20526 0.98089 0.83263 1.08553 1.29950 0.91906 0.95787 0.91580 1.81288 1.11739 1.13996 1.11026 1.62070 1.56724 1.03340 1.03557 1.22202 0.94597 1.00457 0.89532 1.21593 1.00842 0.95021 0.97495 1.21423 0.96798 0.94798 1.01051 1.18540 0.94061 0.92340 0.91420 0.98475 1.21504 1.38576 0.93678 1.03782 0.94725 1.25630 0.94836 1.02550 0.95121 1.70016 1.40439 1.35959 1.08519 0.85683 0.78077 0.81137 0.77841 1.20262 1.19887 1.20198 1.22148 0.97889 0.87476 0.98087 0.93930 0.93912 0.91838 0.88252 0.90104 0.85132 0.82301 0.87120 0.95139 0.92854 0.91145 0.92699 0.96990 0.92947 0.95572 0.94658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.79 71.98 0.70 -2.02 16 2 C -0.10 -1.40 5.39 30.59 0.16 -1.24 16 3 C 0.08 1.79 1.96 44.92 0.09 1.87 16 4 H 0.07 1.80 7.87 -2.39 -0.02 1.78 16 5 C -0.06 -1.09 4.74 28.79 0.14 -0.96 16 6 C 0.22 6.67 12.36 89.44 1.11 7.77 16 7 N -0.50 -19.58 17.62 20.01 0.35 -19.23 16 8 N -0.53 -16.94 3.96 -871.10 -3.45 -20.39 16 9 C 0.06 1.68 4.42 86.33 0.38 2.06 16 10 C -0.11 -4.07 6.09 30.65 0.19 -3.89 16 11 C -0.10 -5.03 5.02 30.66 0.15 -4.87 16 12 C 0.06 2.93 2.26 -11.50 -0.03 2.91 16 13 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 14 C -0.54 -32.10 8.56 25.60 0.22 -31.88 16 15 H 0.03 2.13 7.74 -2.91 -0.02 2.11 16 16 C 0.02 1.04 5.30 84.65 0.45 1.49 16 17 N -0.91 -54.62 11.36 21.45 0.24 -54.37 16 18 Si 0.95 46.64 29.54 68.60 2.03 48.67 16 19 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 C 0.07 3.14 3.95 86.33 0.34 3.48 16 23 H 0.04 1.06 7.71 -2.38 -0.02 1.04 16 24 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.97 6.48 -2.38 -0.02 0.95 16 28 H 0.13 1.85 5.99 -2.39 -0.01 1.83 16 29 H 0.16 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.11 2.22 6.38 -2.39 -0.02 2.20 16 31 H 0.03 0.86 6.35 -2.39 -0.02 0.84 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.05 3.06 6.16 -2.39 -0.01 3.04 16 35 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 37 H 0.03 1.19 4.52 -2.39 -0.01 1.18 16 38 H 0.03 1.62 7.97 -2.39 -0.02 1.61 16 Total: -1.00 -73.49 294.26 4.11 -69.38 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: 1.03 Total: 1.21 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 3.90 Total: -25.27 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -2.85 Total: -93.99 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -73.49 4.11 -69.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173249.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.513 kcal (2) G-P(sol) polarization free energy of solvation -73.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds