Wall clock time and date at job start Sun Mar 29 2020 21:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47315 * 2 1 4 4 H 1.08998 * 109.47510 * 55.75858 * 3 2 1 5 5 C 1.53006 * 109.47100 * 175.76180 * 3 2 1 6 6 C 1.47201 * 109.46875 * 186.96586 * 5 3 2 7 7 N 4.86125 * 126.40274 * 5.93346 * 2 1 3 8 8 N 1.46908 * 109.46848 * 295.75441 * 3 2 1 9 9 C 1.46846 * 110.99536 * 162.27993 * 8 3 2 10 10 C 1.53037 * 109.51977 * 185.84277 * 9 8 3 11 11 C 1.53201 * 109.30077 * 300.81685 * 10 9 8 12 12 C 1.53130 * 109.11281 * 57.63231 * 11 10 9 13 13 H 1.09001 * 109.50202 * 62.32771 * 12 11 10 14 14 C 1.50700 * 109.50099 * 182.40522 * 12 11 10 15 15 H 1.07996 * 119.99984 * 119.92294 * 14 12 11 16 16 C 1.37875 * 119.99919 * 299.92098 * 14 12 11 17 17 N 1.31517 * 120.00306 * 180.02562 * 16 14 12 18 18 Si 1.86806 * 120.00074 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47123 * 90.00194 * 18 16 14 20 20 H 1.48506 * 109.46912 * 210.00266 * 18 16 14 21 21 H 1.48501 * 109.46838 * 329.99981 * 18 16 14 22 22 C 1.46837 * 111.00336 * 286.48927 * 8 3 2 23 23 H 1.09000 * 109.47059 * 295.21272 * 1 2 3 24 24 H 1.08997 * 109.47220 * 55.20651 * 1 2 3 25 25 H 1.08997 * 109.47720 * 175.20737 * 1 2 3 26 26 H 1.09000 * 109.47052 * 239.99232 * 2 1 3 27 27 H 1.09007 * 109.47006 * 120.00001 * 2 1 3 28 28 H 1.09007 * 109.46631 * 306.96160 * 5 3 2 29 29 H 1.08998 * 109.47422 * 66.96463 * 5 3 2 30 30 H 1.09005 * 109.46449 * 305.85616 * 9 8 3 31 31 H 1.08997 * 109.46668 * 65.82369 * 9 8 3 32 32 H 1.09002 * 109.50881 * 60.76117 * 10 9 8 33 33 H 1.09006 * 109.50344 * 180.83784 * 10 9 8 34 34 H 1.08995 * 109.51817 * 297.76441 * 11 10 9 35 35 H 1.08999 * 109.58138 * 177.53942 * 11 10 9 36 36 H 0.96994 * 120.00676 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.46270 * 54.14571 * 22 8 3 38 38 H 1.09005 * 109.45793 * 294.17626 * 22 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6160 1.9778 0.8495 5 6 3.5664 1.4437 0.1066 6 6 4.0453 2.8254 0.2747 7 7 4.4149 3.8917 0.4045 8 7 1.6358 2.1047 -1.2475 9 6 1.7255 3.5649 -1.1210 10 6 1.1613 4.2231 -2.3821 11 6 1.9583 3.7479 -3.6011 12 6 1.8887 2.2202 -3.6812 13 1 0.8531 1.9099 -3.8204 14 6 2.7187 1.7391 -4.8434 15 1 3.5498 1.0707 -4.6733 16 6 2.4170 2.1520 -6.1237 17 7 3.1410 1.7317 -7.1381 18 14 0.9798 3.3086 -6.4178 19 1 1.4522 4.7144 -6.3423 20 1 0.4045 3.0512 -7.7625 21 1 -0.0598 3.0793 -5.3825 22 6 2.4318 1.6202 -2.3823 23 1 -0.3633 0.4378 0.9298 24 1 -0.3633 0.5864 -0.8439 25 1 -0.3634 -1.0240 -0.0859 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8710 0.8465 0.9661 29 1 3.9944 1.0187 -0.8013 30 1 1.1511 3.8903 -0.2535 31 1 2.7686 3.8553 -0.9953 32 1 0.1143 3.9443 -2.5009 33 1 1.2417 5.3066 -2.2942 34 1 2.9977 4.0603 -3.5010 35 1 1.5327 4.1798 -4.5069 36 1 2.9290 2.0225 -8.0388 37 1 2.3705 0.5330 -2.4311 38 1 3.4716 1.9197 -2.2508 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:41 Heat of formation + Delta-G solvation = 26.090577 kcal Electronic energy + Delta-G solvation = -17680.691205 eV Core-core repulsion = 15137.057371 eV Total energy + Delta-G solvation = -2543.633834 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.60519 -36.39890 -35.32961 -32.79297 -31.24809 -30.35991 -29.71873 -25.16663 -24.85335 -23.17154 -21.27639 -20.13887 -18.80582 -17.36162 -16.69244 -16.17088 -15.12158 -14.68714 -14.41109 -14.10779 -13.56604 -13.42889 -13.06664 -12.80668 -12.56026 -12.50621 -12.38488 -12.13280 -11.87992 -11.53537 -11.16229 -11.11161 -10.92708 -10.73144 -10.61338 -10.38993 -10.02834 -9.90483 -9.65551 -9.11184 -8.92534 -8.50689 -7.81997 -6.06656 -4.05762 2.81249 2.86489 3.29937 3.40640 3.43622 4.01061 4.22005 4.43216 4.85129 5.09325 5.14535 5.25340 5.38931 5.43229 5.50479 5.54750 5.65021 5.74582 5.88202 5.94083 6.02401 6.09781 6.15867 6.27914 6.31924 6.33839 6.46297 6.59637 6.62441 6.81270 6.84676 7.20225 7.37737 7.54519 7.63390 7.63930 7.85491 8.51559 8.96100 9.56521 11.06502 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.025223 B = 0.008390 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.829941 B = 3336.517475 C = 3573.203778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.090 3.910 4 H 0.082 0.918 5 C -0.073 4.073 6 C 0.213 3.787 7 N -0.441 5.441 8 N -0.529 5.529 9 C 0.049 3.951 10 C -0.118 4.118 11 C -0.122 4.122 12 C 0.021 3.979 13 H 0.036 0.964 14 C -0.514 4.514 15 H 0.072 0.928 16 C 0.071 3.929 17 N -0.902 5.902 18 Si 0.887 3.113 19 H -0.281 1.281 20 H -0.299 1.299 21 H -0.263 1.263 22 C 0.069 3.931 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.074 0.926 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.976 -2.471 14.842 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.021 4.021 4 H 0.100 0.900 5 C -0.115 4.115 6 C -0.104 4.104 7 N -0.118 5.118 8 N -0.253 5.253 9 C -0.079 4.079 10 C -0.155 4.155 11 C -0.160 4.160 12 C 0.002 3.998 13 H 0.054 0.946 14 C -0.552 4.552 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.540 5.540 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.227 1.227 21 H -0.188 1.188 22 C -0.057 4.057 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.128 0.872 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.882 -0.986 14.752 15.286 hybrid contribution 0.107 0.579 -0.283 0.653 sum -3.775 -0.408 14.470 14.959 Atomic orbital electron populations 1.21640 0.95012 1.01132 1.02342 1.21516 0.97136 0.94113 1.02115 1.21808 0.89109 0.97087 0.94110 0.90012 1.20255 0.99710 0.85410 1.06084 1.29056 0.93150 0.95176 0.93010 1.81206 1.09329 1.12159 1.09118 1.62182 1.55562 1.04757 1.02775 1.22272 0.99566 0.87931 0.98123 1.21638 1.00546 0.98127 0.95237 1.22042 0.98893 0.99817 0.95252 1.19151 0.97750 0.90478 0.92418 0.94573 1.20987 1.15189 1.29304 0.89719 0.90944 1.24976 0.96072 0.95924 0.96085 1.69893 1.39681 1.45141 0.99321 0.86844 0.83724 0.81032 0.76652 1.20844 1.22653 1.18766 1.22219 0.93898 0.99662 0.89924 0.93691 0.90812 0.93444 0.90910 0.91882 0.87192 0.86303 0.92145 0.94321 0.91801 0.93026 0.92790 0.93565 0.92708 0.90785 0.95292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.85 37.16 0.37 -1.16 16 2 C -0.11 -1.11 5.43 -26.73 -0.15 -1.25 16 3 C 0.09 1.02 1.94 -67.71 -0.13 0.89 16 4 H 0.08 0.88 7.82 -51.93 -0.41 0.48 16 5 C -0.07 -0.77 4.71 -29.51 -0.14 -0.91 16 6 C 0.21 2.98 12.33 -20.76 -0.26 2.72 16 7 N -0.44 -7.35 17.60 42.15 0.74 -6.61 16 8 N -0.53 -8.13 3.89 -226.69 -0.88 -9.01 16 9 C 0.05 0.80 4.81 -3.83 -0.02 0.78 16 10 C -0.12 -2.13 6.09 -26.61 -0.16 -2.29 16 11 C -0.12 -2.67 4.74 -26.56 -0.13 -2.80 16 12 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 13 H 0.04 0.86 7.20 -51.93 -0.37 0.49 16 14 C -0.51 -14.01 9.14 -34.44 -0.31 -14.32 16 15 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 16 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 17 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 18 Si 0.89 22.11 24.35 -169.99 -4.14 17.97 16 19 H -0.28 -6.93 6.89 56.52 0.39 -6.54 16 20 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 21 H -0.26 -6.28 6.53 56.52 0.37 -5.91 16 22 C 0.07 1.27 3.54 -3.84 -0.01 1.26 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.96 7.60 -51.93 -0.39 0.56 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.80 6.60 -51.93 -0.34 0.46 16 27 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.12 1.33 6.00 -51.93 -0.31 1.02 16 30 H 0.06 0.89 7.94 -51.93 -0.41 0.48 16 31 H 0.04 0.67 4.58 -51.93 -0.24 0.43 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.07 3.35 -51.93 -0.17 0.90 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.07 1.30 6.52 -51.93 -0.34 0.96 16 38 H 0.03 0.54 6.24 -51.93 -0.32 0.22 16 LS Contribution 287.35 15.07 4.33 4.33 Total: -1.00 -30.80 287.35 -6.26 -37.06 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -5.87 Total: -2.23 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.21 Total: -14.84 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.63 Total: -42.28 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.80 -6.26 -37.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.146 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds