Wall clock time and date at job start Sun Mar 29 2020 21:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47315 * 2 1 4 4 H 1.08998 * 109.47510 * 55.75858 * 3 2 1 5 5 C 1.53006 * 109.47100 * 175.76180 * 3 2 1 6 6 C 1.47201 * 109.46875 * 186.96586 * 5 3 2 7 7 N 4.86125 * 126.40274 * 5.93346 * 2 1 3 8 8 N 1.46908 * 109.46848 * 295.75441 * 3 2 1 9 9 C 1.46846 * 110.99536 * 162.27993 * 8 3 2 10 10 C 1.53037 * 109.51977 * 185.84277 * 9 8 3 11 11 C 1.53201 * 109.30077 * 300.81685 * 10 9 8 12 12 C 1.53130 * 109.11281 * 57.63231 * 11 10 9 13 13 H 1.09001 * 109.50202 * 62.32771 * 12 11 10 14 14 C 1.50700 * 109.50099 * 182.40522 * 12 11 10 15 15 H 1.07996 * 119.99984 * 119.92294 * 14 12 11 16 16 C 1.37875 * 119.99919 * 299.92098 * 14 12 11 17 17 N 1.31517 * 120.00306 * 180.02562 * 16 14 12 18 18 Si 1.86806 * 120.00074 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47123 * 90.00194 * 18 16 14 20 20 H 1.48506 * 109.46912 * 210.00266 * 18 16 14 21 21 H 1.48501 * 109.46838 * 329.99981 * 18 16 14 22 22 C 1.46837 * 111.00336 * 286.48927 * 8 3 2 23 23 H 1.09000 * 109.47059 * 295.21272 * 1 2 3 24 24 H 1.08997 * 109.47220 * 55.20651 * 1 2 3 25 25 H 1.08997 * 109.47720 * 175.20737 * 1 2 3 26 26 H 1.09000 * 109.47052 * 239.99232 * 2 1 3 27 27 H 1.09007 * 109.47006 * 120.00001 * 2 1 3 28 28 H 1.09007 * 109.46631 * 306.96160 * 5 3 2 29 29 H 1.08998 * 109.47422 * 66.96463 * 5 3 2 30 30 H 1.09005 * 109.46449 * 305.85616 * 9 8 3 31 31 H 1.08997 * 109.46668 * 65.82369 * 9 8 3 32 32 H 1.09002 * 109.50881 * 60.76117 * 10 9 8 33 33 H 1.09006 * 109.50344 * 180.83784 * 10 9 8 34 34 H 1.08995 * 109.51817 * 297.76441 * 11 10 9 35 35 H 1.08999 * 109.58138 * 177.53942 * 11 10 9 36 36 H 0.96994 * 120.00676 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.46270 * 54.14571 * 22 8 3 38 38 H 1.09005 * 109.45793 * 294.17626 * 22 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6160 1.9778 0.8495 5 6 3.5664 1.4437 0.1066 6 6 4.0453 2.8254 0.2747 7 7 4.4149 3.8917 0.4045 8 7 1.6358 2.1047 -1.2475 9 6 1.7255 3.5649 -1.1210 10 6 1.1613 4.2231 -2.3821 11 6 1.9583 3.7479 -3.6011 12 6 1.8887 2.2202 -3.6812 13 1 0.8531 1.9099 -3.8204 14 6 2.7187 1.7391 -4.8434 15 1 3.5498 1.0707 -4.6733 16 6 2.4170 2.1520 -6.1237 17 7 3.1410 1.7317 -7.1381 18 14 0.9798 3.3086 -6.4178 19 1 1.4522 4.7144 -6.3423 20 1 0.4045 3.0512 -7.7625 21 1 -0.0598 3.0793 -5.3825 22 6 2.4318 1.6202 -2.3823 23 1 -0.3633 0.4378 0.9298 24 1 -0.3633 0.5864 -0.8439 25 1 -0.3634 -1.0240 -0.0859 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8710 0.8465 0.9661 29 1 3.9944 1.0187 -0.8013 30 1 1.1511 3.8903 -0.2535 31 1 2.7686 3.8553 -0.9953 32 1 0.1143 3.9443 -2.5009 33 1 1.2417 5.3066 -2.2942 34 1 2.9977 4.0603 -3.5010 35 1 1.5327 4.1798 -4.5069 36 1 2.9290 2.0225 -8.0388 37 1 2.3705 0.5330 -2.4311 38 1 3.4716 1.9197 -2.2508 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:40 Heat of formation + Delta-G solvation = 5.752540 kcal Electronic energy + Delta-G solvation = -17681.573129 eV Core-core repulsion = 15137.057371 eV Total energy + Delta-G solvation = -2544.515758 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83935 -37.70952 -36.56523 -34.66720 -32.53519 -31.94761 -30.82064 -26.98834 -26.05031 -24.36025 -22.93946 -21.28580 -20.25623 -18.80185 -18.29558 -17.54026 -16.44515 -16.13397 -15.67355 -15.52222 -14.97069 -14.81461 -14.65480 -14.10833 -13.91958 -13.82383 -13.66979 -13.48212 -12.96733 -12.91929 -12.75190 -12.38270 -12.30692 -11.99742 -11.85535 -11.67169 -11.51424 -11.46845 -11.27650 -10.93893 -10.80098 -10.58145 -9.05946 -8.28914 -6.30796 1.29599 1.35075 1.45782 1.74830 1.80974 2.32958 3.02658 3.06384 3.07696 3.90862 4.01773 4.05274 4.25488 4.29473 4.35284 4.45912 4.62695 4.64192 4.67945 4.80085 4.81519 4.87121 4.93426 5.00619 5.06341 5.14892 5.17904 5.25604 5.36731 5.48995 5.58307 5.65695 5.74393 5.78080 6.18900 6.35771 6.38377 6.59141 6.77201 7.34961 8.87626 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.025223 B = 0.008390 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.829941 B = 3336.517475 C = 3573.203778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C 0.090 3.910 4 H 0.100 0.900 5 C -0.070 4.070 6 C 0.230 3.770 7 N -0.494 5.494 8 N -0.531 5.531 9 C 0.052 3.948 10 C -0.114 4.114 11 C -0.122 4.122 12 C 0.019 3.981 13 H 0.029 0.971 14 C -0.512 4.512 15 H 0.040 0.960 16 C 0.014 3.986 17 N -0.950 5.950 18 Si 0.945 3.055 19 H -0.277 1.277 20 H -0.300 1.300 21 H -0.245 1.245 22 C 0.084 3.916 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.158 0.842 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.264 0.736 37 H 0.080 0.920 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 -2.724 17.498 18.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.020 4.020 4 H 0.118 0.882 5 C -0.111 4.111 6 C -0.085 4.085 7 N -0.172 5.172 8 N -0.254 5.254 9 C -0.076 4.076 10 C -0.151 4.151 11 C -0.159 4.159 12 C 0.000 4.000 13 H 0.047 0.953 14 C -0.550 4.550 15 H 0.058 0.942 16 C -0.183 4.183 17 N -0.591 5.591 18 Si 0.773 3.227 19 H -0.204 1.204 20 H -0.228 1.228 21 H -0.169 1.169 22 C -0.044 4.044 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.176 0.824 29 H 0.131 0.869 30 H 0.102 0.898 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.258 -1.244 17.441 18.259 hybrid contribution 0.582 0.572 -1.072 1.348 sum -4.677 -0.672 16.369 17.037 Atomic orbital electron populations 1.21619 0.95484 1.01179 1.01798 1.21534 0.96627 0.93005 1.03280 1.21973 0.89768 0.97886 0.92371 0.88240 1.20482 0.98798 0.83944 1.07913 1.29695 0.91892 0.95523 0.91418 1.81222 1.10998 1.13912 1.11096 1.62115 1.55134 1.04492 1.03701 1.22249 0.99171 0.88332 0.97874 1.21605 1.00057 0.99253 0.94223 1.21938 0.98525 0.98838 0.96640 1.19088 0.96374 0.91471 0.93046 0.95329 1.21358 1.14351 1.27872 0.91456 0.94200 1.25780 0.98760 0.97756 0.96031 1.70034 1.41914 1.47276 0.99839 0.85890 0.81038 0.79030 0.76721 1.20425 1.22780 1.16884 1.21895 0.93477 0.99701 0.89290 0.92379 0.93557 0.92800 0.92158 0.88290 0.82438 0.86888 0.89776 0.95395 0.91300 0.91562 0.94482 0.95064 0.92740 0.90157 0.96146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.85 71.98 0.71 -1.87 16 2 C -0.11 -1.70 5.43 30.59 0.17 -1.54 16 3 C 0.09 1.71 1.94 44.91 0.09 1.80 16 4 H 0.10 1.65 7.82 -2.39 -0.02 1.63 16 5 C -0.07 -1.23 4.71 28.79 0.14 -1.09 16 6 C 0.23 5.92 12.33 89.44 1.10 7.02 16 7 N -0.49 -15.87 17.60 20.01 0.35 -15.52 16 8 N -0.53 -14.99 3.89 -871.12 -3.39 -18.38 16 9 C 0.05 1.55 4.81 86.33 0.41 1.97 16 10 C -0.11 -3.87 6.09 30.67 0.19 -3.69 16 11 C -0.12 -5.24 4.74 30.70 0.15 -5.09 16 12 C 0.02 0.88 1.85 -11.49 -0.02 0.86 16 13 H 0.03 1.34 7.20 -2.39 -0.02 1.33 16 14 C -0.51 -28.63 9.14 25.60 0.23 -28.40 16 15 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 16 C 0.01 0.79 5.45 84.65 0.46 1.25 16 17 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 18 Si 0.95 46.12 24.35 68.60 1.67 47.79 16 19 H -0.28 -13.25 6.89 99.48 0.69 -12.57 16 20 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 21 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 22 C 0.08 2.98 3.54 86.33 0.31 3.28 16 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.05 1.09 7.60 -2.39 -0.02 1.07 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 1.14 6.60 -2.39 -0.02 1.13 16 27 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.16 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.11 2.23 6.00 -2.39 -0.01 2.22 16 30 H 0.08 2.16 7.94 -2.38 -0.02 2.14 16 31 H 0.03 0.92 4.58 -2.39 -0.01 0.91 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.03 1.42 3.35 -2.39 -0.01 1.41 16 36 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 37 H 0.08 2.74 6.52 -2.39 -0.02 2.72 16 38 H 0.02 0.76 6.24 -2.38 -0.01 0.74 16 Total: -1.00 -69.16 287.35 3.82 -65.34 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 0.96 Total: 5.59 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 3.93 Total: -25.49 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -2.74 Total: -93.22 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.67 Total: 47.79 kcal Total: -69.16 3.82 -65.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.091 kcal (2) G-P(sol) polarization free energy of solvation -69.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds