Wall clock time and date at job start Sun Mar 29 2020 21:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46904 * 2 1 4 4 H 1.09003 * 109.47394 * 300.73773 * 3 2 1 5 5 C 1.53002 * 109.47228 * 180.73394 * 3 2 1 6 6 C 1.47198 * 109.46959 * 172.06233 * 5 3 2 7 7 N 4.85964 * 126.71052 * 354.72559 * 2 1 3 8 8 N 1.46900 * 109.47210 * 60.73435 * 3 2 1 9 9 C 1.46845 * 111.00357 * 194.12803 * 8 3 2 10 10 C 1.53036 * 109.52518 * 174.15672 * 9 8 3 11 11 C 1.53126 * 109.27441 * 59.18237 * 10 9 8 12 12 C 1.53119 * 109.15889 * 302.34364 * 11 10 9 13 13 H 1.09000 * 109.50065 * 297.67324 * 12 11 10 14 14 C 1.50701 * 109.49953 * 177.59815 * 12 11 10 15 15 H 1.08013 * 119.99766 * 239.99878 * 14 12 11 16 16 C 1.37870 * 120.00325 * 59.99772 * 14 12 11 17 17 N 1.31519 * 120.00077 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 120.00131 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46862 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47043 * 120.00262 * 18 16 14 21 21 H 1.48498 * 109.47238 * 240.00243 * 18 16 14 22 22 C 1.46851 * 110.99728 * 69.91637 * 8 3 2 23 23 H 1.09005 * 109.46742 * 176.66227 * 1 2 3 24 24 H 1.08998 * 109.47274 * 296.65992 * 1 2 3 25 25 H 1.09000 * 109.47554 * 56.66191 * 1 2 3 26 26 H 1.08999 * 109.46905 * 240.00335 * 2 1 3 27 27 H 1.08999 * 109.47282 * 120.00140 * 2 1 3 28 28 H 1.09005 * 109.46967 * 52.05789 * 5 3 2 29 29 H 1.08996 * 109.47194 * 292.06497 * 5 3 2 30 30 H 1.09000 * 109.46136 * 294.17979 * 9 8 3 31 31 H 1.09004 * 109.46132 * 54.14268 * 9 8 3 32 32 H 1.09001 * 109.50401 * 179.12077 * 10 9 8 33 33 H 1.08991 * 109.50756 * 299.20249 * 10 9 8 34 34 H 1.08997 * 109.52036 * 62.24654 * 11 10 9 35 35 H 1.09002 * 109.52210 * 182.43930 * 11 10 9 36 36 H 0.96991 * 119.99913 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.46156 * 305.85766 * 22 8 3 38 38 H 1.09002 * 109.46063 * 65.83065 * 22 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6659 1.9602 -0.8833 5 6 3.5699 1.4426 -0.0185 6 6 4.0581 2.8180 -0.2102 7 7 4.4350 3.8793 -0.3581 8 7 1.5648 2.1299 1.2082 9 6 1.7414 3.5829 1.0909 10 6 1.1056 4.2746 2.2990 11 6 1.7685 3.7629 3.5810 12 6 1.6124 2.2415 3.6548 13 1 0.5538 1.9863 3.7045 14 6 2.3132 1.7229 4.8840 15 1 3.1190 1.0103 4.7860 16 6 1.9258 2.1580 6.1336 17 7 0.9444 3.0253 6.2529 18 14 2.7941 1.5146 7.6573 19 1 3.8545 0.5560 7.2551 20 1 3.4066 2.6491 8.3942 21 1 1.8118 0.8277 8.5339 22 6 2.2334 1.6088 2.4074 23 1 -0.3633 -1.0260 -0.0598 24 1 -0.3634 0.4611 0.9184 25 1 -0.3634 0.5648 -0.8585 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.9234 0.8142 -0.8360 29 1 3.9447 1.0526 0.9278 30 1 2.8052 3.8179 1.0561 31 1 1.2619 3.9344 0.1773 32 1 1.2505 5.3520 2.2194 33 1 0.0391 4.0519 2.3263 34 1 2.8275 4.0204 3.5712 35 1 1.2893 4.2207 4.4465 36 1 0.6716 3.3311 7.1321 37 1 2.1113 0.5265 2.4499 38 1 3.2949 1.8530 2.3664 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:43 Heat of formation + Delta-G solvation = 18.879215 kcal Electronic energy + Delta-G solvation = -17605.170896 eV Core-core repulsion = 15061.224353 eV Total energy + Delta-G solvation = -2543.946542 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.43425 -36.24802 -35.13221 -32.80446 -30.94852 -29.88792 -29.50982 -24.99975 -24.72387 -22.88533 -21.39891 -19.92787 -18.53588 -17.27730 -16.56407 -15.72638 -14.88929 -14.47715 -14.30502 -14.20484 -13.43863 -13.14461 -12.92633 -12.63040 -12.42210 -12.24972 -12.19053 -11.87009 -11.64077 -11.34380 -11.05215 -10.94790 -10.80678 -10.64529 -10.55994 -10.35596 -10.03264 -9.77992 -9.45144 -9.03270 -8.68214 -8.30151 -7.64338 -5.97147 -4.03419 2.87745 2.92433 3.29840 3.38233 3.40958 4.07815 4.33122 4.49949 4.93911 5.17844 5.22824 5.33226 5.45263 5.54264 5.64527 5.74962 5.84882 5.89503 6.02754 6.11949 6.18710 6.28354 6.37982 6.41308 6.52820 6.69527 6.73377 6.77942 6.97583 7.22418 7.40582 7.63660 7.69255 7.74776 7.79949 8.08293 8.18141 8.47814 9.00916 9.61125 11.08763 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.007682 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.870754 B = 3643.856385 C = 3891.092697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C 0.088 3.912 4 H 0.081 0.919 5 C -0.073 4.073 6 C 0.214 3.786 7 N -0.443 5.443 8 N -0.525 5.525 9 C 0.049 3.951 10 C -0.115 4.115 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.035 0.965 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.284 1.284 22 C 0.061 3.939 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.027 0.973 35 H 0.090 0.910 36 H 0.259 0.741 37 H 0.066 0.934 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 -5.293 -11.845 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C -0.023 4.023 4 H 0.099 0.901 5 C -0.115 4.115 6 C -0.102 4.102 7 N -0.120 5.120 8 N -0.248 5.248 9 C -0.079 4.079 10 C -0.153 4.153 11 C -0.148 4.148 12 C 0.037 3.963 13 H 0.053 0.947 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.066 4.066 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.126 0.874 29 H 0.135 0.865 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.838 -3.694 -11.880 12.469 hybrid contribution 1.266 -0.444 0.887 1.608 sum 2.104 -4.138 -10.993 11.933 Atomic orbital electron populations 1.21605 0.94850 1.00394 1.02994 1.21518 0.97305 0.94172 1.01860 1.21838 0.88420 0.96810 0.95191 0.90130 1.20249 0.99829 0.85533 1.05883 1.29026 0.93048 0.95136 0.93006 1.81202 1.09642 1.12006 1.09184 1.62194 1.57288 1.03605 1.01744 1.22316 0.98936 0.87991 0.98623 1.21650 1.00542 0.97301 0.95843 1.21652 0.97757 0.99600 0.95827 1.18651 0.96874 0.91178 0.89573 0.94704 1.21176 1.17983 1.25256 0.90853 0.92804 1.24931 0.95003 0.95050 0.98850 1.69899 1.27983 1.31515 1.23218 0.86602 0.79621 0.78743 0.83398 1.19851 1.21178 1.21043 1.22433 0.95022 0.99122 0.90018 0.93708 0.90807 0.93540 0.92046 0.91106 0.87350 0.86530 0.94737 0.92783 0.93789 0.92090 0.95404 0.89139 0.93133 0.91559 0.96050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.71 37.16 0.36 -1.29 16 2 C -0.11 -1.19 5.34 -26.73 -0.14 -1.34 16 3 C 0.09 1.10 1.99 -67.71 -0.13 0.96 16 4 H 0.08 0.96 7.88 -51.93 -0.41 0.55 16 5 C -0.07 -0.82 4.76 -29.52 -0.14 -0.96 16 6 C 0.21 3.14 12.38 -20.76 -0.26 2.89 16 7 N -0.44 -7.66 17.66 42.15 0.74 -6.91 16 8 N -0.52 -8.70 3.90 -226.69 -0.88 -9.59 16 9 C 0.05 0.88 4.70 -3.84 -0.02 0.86 16 10 C -0.12 -2.32 6.09 -26.65 -0.16 -2.48 16 11 C -0.11 -2.62 5.02 -26.60 -0.13 -2.76 16 12 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.51 -13.68 8.56 -34.44 -0.29 -13.98 16 15 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.12 11.35 55.43 0.63 -24.49 16 18 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.06 1.16 3.67 -3.83 -0.01 1.15 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 1.06 7.73 -51.93 -0.40 0.66 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.82 6.55 -51.93 -0.34 0.48 16 28 H 0.11 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.12 1.38 5.96 -51.93 -0.31 1.07 16 30 H 0.03 0.65 4.56 -51.93 -0.24 0.41 16 31 H 0.05 0.89 7.97 -51.93 -0.41 0.48 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.07 1.21 6.39 -51.93 -0.33 0.88 16 38 H 0.02 0.42 6.39 -51.93 -0.33 0.09 16 LS Contribution 294.33 15.07 4.44 4.44 Total: -1.00 -29.04 294.33 -7.35 -36.39 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -6.02 Total: -1.68 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.24 Total: -14.18 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.49 Total: -40.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.04 -7.35 -36.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.270 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds