Wall clock time and date at job start Sun Mar 29 2020 21:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46904 * 2 1 4 4 H 1.09003 * 109.47394 * 300.73773 * 3 2 1 5 5 C 1.53002 * 109.47228 * 180.73394 * 3 2 1 6 6 C 1.47198 * 109.46959 * 172.06233 * 5 3 2 7 7 N 4.85964 * 126.71052 * 354.72559 * 2 1 3 8 8 N 1.46900 * 109.47210 * 60.73435 * 3 2 1 9 9 C 1.46845 * 111.00357 * 194.12803 * 8 3 2 10 10 C 1.53036 * 109.52518 * 174.15672 * 9 8 3 11 11 C 1.53126 * 109.27441 * 59.18237 * 10 9 8 12 12 C 1.53119 * 109.15889 * 302.34364 * 11 10 9 13 13 H 1.09000 * 109.50065 * 297.67324 * 12 11 10 14 14 C 1.50701 * 109.49953 * 177.59815 * 12 11 10 15 15 H 1.08013 * 119.99766 * 239.99878 * 14 12 11 16 16 C 1.37870 * 120.00325 * 59.99772 * 14 12 11 17 17 N 1.31519 * 120.00077 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 120.00131 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46862 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47043 * 120.00262 * 18 16 14 21 21 H 1.48498 * 109.47238 * 240.00243 * 18 16 14 22 22 C 1.46851 * 110.99728 * 69.91637 * 8 3 2 23 23 H 1.09005 * 109.46742 * 176.66227 * 1 2 3 24 24 H 1.08998 * 109.47274 * 296.65992 * 1 2 3 25 25 H 1.09000 * 109.47554 * 56.66191 * 1 2 3 26 26 H 1.08999 * 109.46905 * 240.00335 * 2 1 3 27 27 H 1.08999 * 109.47282 * 120.00140 * 2 1 3 28 28 H 1.09005 * 109.46967 * 52.05789 * 5 3 2 29 29 H 1.08996 * 109.47194 * 292.06497 * 5 3 2 30 30 H 1.09000 * 109.46136 * 294.17979 * 9 8 3 31 31 H 1.09004 * 109.46132 * 54.14268 * 9 8 3 32 32 H 1.09001 * 109.50401 * 179.12077 * 10 9 8 33 33 H 1.08991 * 109.50756 * 299.20249 * 10 9 8 34 34 H 1.08997 * 109.52036 * 62.24654 * 11 10 9 35 35 H 1.09002 * 109.52210 * 182.43930 * 11 10 9 36 36 H 0.96991 * 119.99913 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.46156 * 305.85766 * 22 8 3 38 38 H 1.09002 * 109.46063 * 65.83065 * 22 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6659 1.9602 -0.8833 5 6 3.5699 1.4426 -0.0185 6 6 4.0581 2.8180 -0.2102 7 7 4.4350 3.8793 -0.3581 8 7 1.5648 2.1299 1.2082 9 6 1.7414 3.5829 1.0909 10 6 1.1056 4.2746 2.2990 11 6 1.7685 3.7629 3.5810 12 6 1.6124 2.2415 3.6548 13 1 0.5538 1.9863 3.7045 14 6 2.3132 1.7229 4.8840 15 1 3.1190 1.0103 4.7860 16 6 1.9258 2.1580 6.1336 17 7 0.9444 3.0253 6.2529 18 14 2.7941 1.5146 7.6573 19 1 3.8545 0.5560 7.2551 20 1 3.4066 2.6491 8.3942 21 1 1.8118 0.8277 8.5339 22 6 2.2334 1.6088 2.4074 23 1 -0.3633 -1.0260 -0.0598 24 1 -0.3634 0.4611 0.9184 25 1 -0.3634 0.5648 -0.8585 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.9234 0.8142 -0.8360 29 1 3.9447 1.0526 0.9278 30 1 2.8052 3.8179 1.0561 31 1 1.2619 3.9344 0.1773 32 1 1.2505 5.3520 2.2194 33 1 0.0391 4.0519 2.3263 34 1 2.8275 4.0204 3.5712 35 1 1.2893 4.2207 4.4465 36 1 0.6716 3.3311 7.1321 37 1 2.1113 0.5265 2.4499 38 1 3.2949 1.8530 2.3664 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173251.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:42 Heat of formation + Delta-G solvation = 1.650760 kcal Electronic energy + Delta-G solvation = -17605.917977 eV Core-core repulsion = 15061.224353 eV Total energy + Delta-G solvation = -2544.693624 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74750 -37.60862 -36.48947 -34.60170 -32.17621 -31.65510 -30.74020 -26.94745 -25.89605 -24.21958 -23.11122 -21.17845 -20.11483 -18.49604 -18.25059 -17.24060 -16.33693 -16.12794 -15.63553 -15.38605 -14.80123 -14.71282 -14.38963 -13.90526 -13.86901 -13.69154 -13.61744 -13.22695 -12.89495 -12.85300 -12.68158 -12.46516 -12.34171 -12.00357 -11.81502 -11.58421 -11.51165 -11.47159 -11.24793 -10.81225 -10.57706 -10.35806 -8.98524 -8.05213 -6.18565 1.41042 1.43350 1.53770 1.76303 1.82444 2.44534 3.07074 3.12325 3.22531 3.96140 4.11545 4.18146 4.33876 4.36231 4.43409 4.60658 4.66220 4.72552 4.75947 4.87076 4.90604 4.96555 5.04574 5.10441 5.19648 5.26953 5.34948 5.37812 5.53980 5.59390 5.66575 5.76586 6.00621 6.15459 6.24113 6.43640 6.50444 6.60825 6.96087 7.49580 8.99625 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.007682 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.870754 B = 3643.856385 C = 3891.092697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C 0.087 3.913 4 H 0.095 0.905 5 C -0.069 4.069 6 C 0.231 3.769 7 N -0.496 5.496 8 N -0.532 5.532 9 C 0.058 3.942 10 C -0.111 4.111 11 C -0.102 4.102 12 C 0.053 3.947 13 H -0.001 1.001 14 C -0.529 4.529 15 H 0.057 0.943 16 C 0.011 3.989 17 N -0.918 5.918 18 Si 0.950 3.050 19 H -0.263 1.263 20 H -0.287 1.287 21 H -0.281 1.281 22 C 0.078 3.922 23 H 0.056 0.944 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.159 0.841 29 H 0.115 0.885 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.012 0.988 35 H 0.054 0.946 36 H 0.258 0.742 37 H 0.078 0.922 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 -7.145 -13.650 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.022 4.022 4 H 0.113 0.887 5 C -0.110 4.110 6 C -0.084 4.084 7 N -0.175 5.175 8 N -0.255 5.255 9 C -0.071 4.071 10 C -0.149 4.149 11 C -0.140 4.140 12 C 0.034 3.966 13 H 0.017 0.983 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.188 4.188 17 N -0.558 5.558 18 Si 0.776 3.224 19 H -0.187 1.187 20 H -0.213 1.213 21 H -0.207 1.207 22 C -0.049 4.049 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.177 0.823 29 H 0.133 0.867 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 1.724 -5.561 -13.702 14.888 hybrid contribution 0.937 0.119 1.431 1.714 sum 2.661 -5.442 -12.271 13.685 Atomic orbital electron populations 1.21581 0.95776 1.00971 1.01496 1.21538 0.96387 0.92943 1.03437 1.22004 0.89379 0.97602 0.93260 0.88724 1.20470 0.98555 0.84212 1.07799 1.29688 0.91806 0.95498 0.91432 1.81221 1.11327 1.13749 1.11154 1.62096 1.57714 1.03043 1.02689 1.22195 0.98301 0.88754 0.97828 1.21558 0.99901 0.98122 0.95270 1.21450 0.96527 0.99596 0.96467 1.18581 0.94860 0.91546 0.91611 0.98257 1.21597 1.17985 1.25082 0.92073 0.92457 1.25729 0.95745 0.95375 1.01901 1.70053 1.29384 1.32689 1.23661 0.85622 0.78751 0.78177 0.79801 1.18662 1.21343 1.20696 1.22067 0.94419 0.99263 0.89136 0.92455 0.94305 0.92727 0.88063 0.91844 0.82336 0.86700 0.95424 0.90863 0.92948 0.92746 0.96934 0.92723 0.93315 0.90405 0.96170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.71 71.98 0.70 -2.22 16 2 C -0.11 -1.84 5.34 30.59 0.16 -1.68 16 3 C 0.09 1.86 1.99 44.92 0.09 1.95 16 4 H 0.09 1.84 7.88 -2.39 -0.02 1.82 16 5 C -0.07 -1.27 4.76 28.79 0.14 -1.14 16 6 C 0.23 6.20 12.38 89.44 1.11 7.31 16 7 N -0.50 -16.51 17.66 20.00 0.35 -16.16 16 8 N -0.53 -16.80 3.90 -871.10 -3.40 -20.20 16 9 C 0.06 1.98 4.70 86.33 0.41 2.39 16 10 C -0.11 -4.50 6.09 30.65 0.19 -4.31 16 11 C -0.10 -5.04 5.02 30.68 0.15 -4.88 16 12 C 0.05 2.61 2.26 -11.49 -0.03 2.58 16 13 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 14 C -0.53 -28.58 8.56 25.60 0.22 -28.36 16 15 H 0.06 2.98 7.74 -2.90 -0.02 2.96 16 16 C 0.01 0.60 5.30 84.65 0.45 1.05 16 17 N -0.92 -53.75 11.35 21.45 0.24 -53.51 16 18 Si 0.95 43.57 29.54 68.60 2.03 45.59 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 C 0.08 2.95 3.67 86.33 0.32 3.26 16 23 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.04 1.07 7.73 -2.39 -0.02 1.05 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.24 6.55 -2.39 -0.02 1.22 16 28 H 0.16 1.43 8.13 -2.38 -0.02 1.41 16 29 H 0.12 2.29 5.96 -2.39 -0.01 2.28 16 30 H 0.03 1.01 4.56 -2.39 -0.01 1.00 16 31 H 0.07 2.26 7.97 -2.38 -0.02 2.25 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.05 3.07 6.15 -2.39 -0.01 3.05 16 36 H 0.26 14.41 8.31 -92.72 -0.77 13.64 16 37 H 0.08 2.74 6.39 -2.39 -0.02 2.72 16 38 H 0.02 0.77 6.39 -2.39 -0.02 0.75 16 Total: -1.00 -65.67 294.33 4.15 -61.51 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.03 Total: 6.82 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 3.90 Total: -24.06 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -2.80 Total: -89.87 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -65.67 4.15 -61.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173251.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.165 kcal (2) G-P(sol) polarization free energy of solvation -65.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds