Wall clock time and date at job start Sun Mar 29 2020 21:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47795 * 2 1 4 4 H 1.09005 * 109.46846 * 303.21215 * 3 2 1 5 5 C 1.50692 * 109.47720 * 183.20907 * 3 2 1 6 6 H 1.07997 * 120.00484 * 240.00465 * 5 3 2 7 7 C 1.37886 * 119.99763 * 60.00003 * 5 3 2 8 8 N 1.31509 * 119.99995 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99838 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47402 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47445 * 119.99768 * 9 7 5 12 12 H 1.48497 * 109.46965 * 239.99780 * 9 7 5 13 13 N 1.46898 * 109.47169 * 63.20758 * 3 2 1 14 14 C 1.46843 * 111.00534 * 191.00763 * 13 3 2 15 15 C 1.53037 * 109.52574 * 174.16162 * 14 13 3 16 16 C 1.53119 * 109.27884 * 59.17918 * 15 14 13 17 17 C 1.52994 * 109.52204 * 182.43825 * 16 15 14 18 18 C 1.47199 * 109.52132 * 62.25143 * 16 15 14 19 19 N 6.25118 * 118.23158 * 40.94269 * 2 1 3 20 20 C 1.53115 * 109.15933 * 302.34344 * 16 15 14 21 21 C 1.46853 * 110.99913 * 66.79571 * 13 3 2 22 22 H 1.09000 * 109.47592 * 184.78042 * 1 2 3 23 23 H 1.09006 * 109.46367 * 304.77863 * 1 2 3 24 24 H 1.08996 * 109.46748 * 64.77524 * 1 2 3 25 25 H 1.09002 * 109.46916 * 239.99500 * 2 1 3 26 26 H 1.09005 * 109.47194 * 120.00479 * 2 1 3 27 27 H 0.96998 * 119.99785 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.45997 * 294.17628 * 14 13 3 29 29 H 1.09003 * 109.46081 * 54.14154 * 14 13 3 30 30 H 1.08999 * 109.50553 * 299.23296 * 15 14 13 31 31 H 1.09009 * 109.53454 * 179.13939 * 15 14 13 32 32 H 1.09003 * 109.47314 * 179.67907 * 17 16 15 33 33 H 1.09001 * 109.47701 * 299.68169 * 17 16 15 34 34 H 1.09004 * 109.47273 * 59.68487 * 17 16 15 35 35 H 1.08993 * 109.50834 * 297.71367 * 20 16 15 36 36 H 1.09003 * 109.53204 * 177.61375 * 20 16 15 37 37 H 1.09000 * 109.46102 * 305.85865 * 21 13 3 38 38 H 1.08995 * 109.45964 * 65.83766 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 1.6306 1.9726 -0.8598 5 6 3.5450 1.4431 -0.0795 6 1 4.1273 1.8957 0.7094 7 6 4.1785 0.8657 -1.1596 8 7 3.4695 0.3141 -2.1200 9 14 6.0439 0.8660 -1.2579 10 1 6.6026 1.5436 -0.0604 11 1 6.5371 -0.5337 -1.3103 12 1 6.4750 1.5888 -2.4813 13 7 1.6149 2.1122 1.2363 14 6 1.8559 3.5587 1.1609 15 6 1.2704 4.2401 2.3999 16 6 1.9281 3.6590 3.6546 17 6 1.3037 4.2927 4.8993 18 6 3.3724 3.9419 3.6289 19 7 4.4870 4.1602 3.6091 20 6 1.7037 2.1446 3.6841 21 6 2.2766 1.5240 2.4079 22 1 -0.3634 -1.0241 0.0856 23 1 -0.3632 0.5862 0.8442 24 1 -0.3633 0.4380 -0.9297 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.9152 -0.0917 -2.8800 28 1 2.9286 3.7463 1.1161 29 1 1.3795 3.9601 0.2664 30 1 0.1953 4.0646 2.4379 31 1 1.4626 5.3120 2.3514 32 1 1.7684 3.8743 5.7921 33 1 1.4638 5.3707 4.8775 34 1 0.2338 4.0846 4.9152 35 1 0.6355 1.9360 3.7424 36 1 2.2056 1.7187 4.5529 37 1 2.1058 0.4475 2.4192 38 1 3.3474 1.7213 2.3573 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173903.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:18 Heat of formation + Delta-G solvation = -4.662971 kcal Electronic energy + Delta-G solvation = -17729.924133 eV Core-core repulsion = 15184.956725 eV Total energy + Delta-G solvation = -2544.967408 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.74773 -37.92971 -36.19372 -34.26657 -32.90932 -31.68334 -29.42578 -27.51649 -24.91972 -24.16867 -23.77476 -22.08945 -20.89832 -18.60018 -17.26067 -16.92642 -16.20990 -15.82270 -15.55867 -15.30480 -14.98120 -14.74263 -14.38206 -13.84381 -13.66653 -13.51656 -13.25853 -13.08506 -12.99305 -12.90325 -12.75546 -12.57577 -12.35833 -12.25985 -12.05233 -11.87622 -11.59818 -11.51285 -11.19843 -10.95941 -10.83827 -10.44848 -8.93368 -8.08428 -6.29417 1.23900 1.28157 1.37595 1.79471 1.84329 2.32186 2.97316 3.08667 3.46852 3.82747 3.92047 4.04181 4.41078 4.57784 4.65425 4.70828 4.81471 4.85646 4.87503 4.89780 4.99371 5.07279 5.10237 5.15106 5.22792 5.30933 5.37559 5.40890 5.44656 5.51577 5.54783 5.67263 5.83469 6.11017 6.19511 6.37197 6.62850 6.70683 6.94180 7.40797 8.85403 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.009499 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.642305 B = 2947.061878 C = 3735.883282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.219 3.781 4 H 0.007 0.993 5 C -0.547 4.547 6 H 0.034 0.966 7 C 0.027 3.973 8 N -0.904 5.904 9 Si 0.931 3.069 10 H -0.289 1.289 11 H -0.273 1.273 12 H -0.278 1.278 13 N -0.513 5.513 14 C 0.053 3.947 15 C -0.092 4.092 16 C 0.034 3.966 17 C -0.130 4.130 18 C 0.239 3.761 19 N -0.508 5.508 20 C -0.095 4.095 21 C 0.056 3.944 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.057 0.943 26 H 0.030 0.970 27 H 0.262 0.738 28 H -0.009 1.009 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.068 0.932 38 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.156 4.790 12.004 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.025 0.975 5 C -0.586 4.586 6 H 0.052 0.948 7 C -0.173 4.173 8 N -0.543 5.543 9 Si 0.759 3.241 10 H -0.215 1.215 11 H -0.199 1.199 12 H -0.203 1.203 13 N -0.237 5.237 14 C -0.075 4.075 15 C -0.130 4.130 16 C 0.030 3.970 17 C -0.188 4.188 18 C -0.078 4.078 19 N -0.184 5.184 20 C -0.134 4.134 21 C -0.073 4.073 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.009 0.991 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges -8.942 4.958 11.849 15.651 hybrid contribution 2.470 -0.154 -0.968 2.657 sum -6.472 4.804 10.881 13.542 Atomic orbital electron populations 1.21575 0.95555 1.00117 1.01031 1.21409 0.95058 0.97716 1.00123 1.19038 0.90678 0.91972 0.87130 0.97526 1.21976 0.94677 1.36681 1.05303 0.94764 1.25449 1.00868 0.95280 0.95704 1.69969 1.35762 1.38535 1.10040 0.85931 0.82909 0.77954 0.77336 1.21497 1.19885 1.20331 1.62436 1.55954 1.02169 1.03116 1.22007 0.96556 0.89772 0.99199 1.21751 1.02397 0.99195 0.89682 1.18825 0.79569 0.98480 1.00104 1.21862 1.02971 1.00807 0.93118 1.30064 0.95809 0.91158 0.90739 1.81163 1.14850 1.11270 1.11122 1.21789 1.04668 0.90723 0.96184 1.22009 0.94574 0.99490 0.91233 0.93663 0.91225 0.94976 0.92459 0.95092 0.92842 0.99088 0.91712 0.86079 0.89944 0.91379 0.91329 0.87281 0.86151 0.90127 0.91318 0.98742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 9.85 71.98 0.71 -3.92 16 2 C -0.10 -4.82 5.14 30.59 0.16 -4.66 16 3 C 0.22 10.70 1.72 44.16 0.08 10.78 16 4 H 0.01 0.37 7.97 -2.38 -0.02 0.35 16 5 C -0.55 -30.55 7.24 25.60 0.19 -30.37 16 6 H 0.03 2.03 5.84 -2.91 -0.02 2.01 16 7 C 0.03 1.54 5.30 84.66 0.45 1.99 16 8 N -0.90 -52.08 11.30 21.45 0.24 -51.84 16 9 Si 0.93 46.20 29.54 68.60 2.03 48.23 16 10 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 11 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 13 N -0.51 -19.86 3.89 -875.53 -3.41 -23.27 16 14 C 0.05 1.93 4.99 86.33 0.43 2.36 16 15 C -0.09 -2.14 4.86 30.65 0.15 -1.99 16 16 C 0.03 0.77 0.72 -53.91 -0.04 0.73 16 17 C -0.13 -1.72 8.44 71.98 0.61 -1.11 16 18 C 0.24 7.82 11.60 89.44 1.04 8.86 16 19 N -0.51 -20.37 18.54 20.01 0.37 -20.00 16 20 C -0.10 -2.25 4.86 30.65 0.15 -2.10 16 21 C 0.06 2.02 4.57 86.33 0.39 2.41 16 22 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.07 2.32 7.56 -2.38 -0.02 2.30 16 24 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 3.04 5.99 -2.39 -0.01 3.03 16 26 H 0.03 1.40 6.33 -2.38 -0.02 1.38 16 27 H 0.26 14.40 8.31 -92.71 -0.77 13.62 16 28 H -0.01 -0.41 6.53 -2.39 -0.02 -0.43 16 29 H 0.06 2.36 8.00 -2.39 -0.02 2.34 16 30 H 0.12 2.12 8.14 -2.39 -0.02 2.11 16 31 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 2.57 6.20 -2.39 -0.01 2.55 16 38 H -0.01 -0.26 5.50 -2.39 -0.01 -0.27 16 Total: -1.00 -68.14 295.38 4.57 -63.58 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 1.03 Total: 0.34 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 4.31 Total: -17.03 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -2.79 Total: -95.11 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -68.14 4.57 -63.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173903.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.912 kcal (2) G-P(sol) polarization free energy of solvation -68.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds