Wall clock time and date at job start Sun Mar 29 2020 21:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46906 * 109.47134 * 325.00394 * 3 2 1 5 5 C 1.46961 * 110.99734 * 293.80269 * 4 3 2 6 6 C 1.53049 * 109.36292 * 176.81247 * 5 4 3 7 7 N 1.46955 * 109.36716 * 58.39846 * 6 5 4 8 8 C 1.46896 * 111.00246 * 176.81294 * 7 6 5 9 9 H 1.09004 * 109.47327 * 178.79919 * 8 7 6 10 10 C 1.50703 * 109.47381 * 58.80079 * 8 7 6 11 11 H 1.07996 * 119.99595 * 359.97438 * 10 8 7 12 12 C 1.37869 * 120.00174 * 180.02562 * 10 8 7 13 13 N 1.31514 * 120.00228 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 119.99934 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47598 * 89.99476 * 14 12 10 16 16 H 1.48503 * 109.46856 * 209.99460 * 14 12 10 17 17 H 1.48504 * 109.46993 * 329.99065 * 14 12 10 18 18 C 1.52999 * 109.47119 * 298.79930 * 8 7 6 19 19 C 1.52995 * 109.47156 * 295.00074 * 18 8 7 20 20 C 1.46961 * 110.88206 * 300.68030 * 7 6 5 21 21 C 1.46952 * 110.99889 * 170.00109 * 4 3 2 22 22 H 4.40894 * 5.52106 * 179.97438 * 4 1 2 23 23 H 1.08993 * 109.46973 * 205.00426 * 3 2 1 24 24 H 1.08996 * 109.47311 * 85.00270 * 3 2 1 25 25 H 1.09003 * 109.48904 * 296.77641 * 5 4 3 26 26 H 1.09002 * 109.49205 * 56.84173 * 5 4 3 27 27 H 1.09008 * 109.48964 * 298.43140 * 6 5 4 28 28 H 1.09002 * 109.50883 * 178.37660 * 6 5 4 29 29 H 0.97000 * 120.00230 * 180.02562 * 13 12 10 30 30 H 1.09003 * 109.47240 * 54.99845 * 18 8 7 31 31 H 1.09000 * 109.47270 * 175.00215 * 18 8 7 32 32 H 1.08998 * 109.47268 * 180.02562 * 19 18 8 33 33 H 1.09002 * 109.47321 * 299.99740 * 19 18 8 34 34 H 1.09001 * 109.47638 * 59.99753 * 19 18 8 35 35 H 1.09003 * 109.48904 * 299.35325 * 20 7 6 36 36 H 1.08989 * 109.49349 * 179.28524 * 20 7 6 37 37 H 1.08999 * 109.49234 * 303.15264 * 21 4 3 38 38 H 1.08996 * 109.49284 * 63.22180 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.1337 0.7943 5 6 2.7896 -0.9719 2.2133 6 6 3.2465 -2.2080 2.9915 7 7 4.6959 -2.3818 2.8228 8 6 5.1861 -3.5162 3.6171 9 1 6.2577 -3.6355 3.4574 10 6 4.4718 -4.7732 3.1919 11 1 3.7278 -4.7333 2.4101 12 6 4.7674 -5.9739 3.8017 13 7 5.6730 -6.0224 4.7541 14 14 3.8825 -7.5321 3.2741 15 1 4.6418 -8.1858 2.1782 16 1 3.7828 -8.4600 4.4292 17 1 2.5191 -7.1892 2.7956 18 6 4.9177 -3.2540 5.1004 19 6 5.7412 -2.0502 5.5627 20 6 5.0426 -2.5437 1.4039 21 6 4.5857 -1.3075 0.6257 22 1 -1.0498 -0.0001 0.0003 23 1 3.0089 0.9321 0.4344 24 1 3.0094 -0.0887 -1.0237 25 1 3.2877 -0.0874 2.6107 26 1 1.7102 -0.8575 2.3133 27 1 2.7281 -3.0887 2.6121 28 1 3.0165 -2.0780 4.0490 29 1 5.8812 -6.8672 5.1828 30 1 3.8576 -3.0467 5.2467 31 1 5.1999 -4.1319 5.6815 32 1 5.5503 -1.8637 6.6195 33 1 6.8013 -2.2574 5.4164 34 1 5.4591 -1.1722 4.9817 35 1 4.5445 -3.4282 1.0065 36 1 6.1218 -2.6580 1.3039 37 1 4.8157 -1.4379 -0.4318 38 1 5.1041 -0.4269 1.0050 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174714.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:23 Heat of formation + Delta-G solvation = 65.678019 kcal Electronic energy + Delta-G solvation = -17378.043687 eV Core-core repulsion = 14836.126493 eV Total energy + Delta-G solvation = -2541.917194 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.87985 -36.15389 -33.42717 -32.08686 -31.11333 -30.22933 -28.04241 -26.02651 -23.83217 -23.07159 -22.32509 -19.72724 -18.81090 -18.04753 -16.36498 -15.76154 -14.87298 -14.72682 -14.59876 -14.18239 -13.69591 -13.46563 -12.92523 -12.81556 -12.32306 -12.16169 -11.67697 -11.45101 -11.12033 -10.82939 -10.69133 -10.66578 -10.49628 -10.44943 -10.21652 -10.07672 -9.75787 -9.63368 -9.31601 -9.06720 -8.33175 -8.10278 -7.09032 -5.95867 -4.08879 2.79441 2.91623 3.29128 3.36337 3.40529 4.27791 4.42764 4.52221 5.07601 5.28363 5.35159 5.37739 5.56686 5.65656 5.86501 5.91789 6.00281 6.03780 6.17694 6.28965 6.41347 6.47175 6.62531 6.70033 6.81790 6.90616 7.09503 7.18812 7.26455 7.31192 7.40292 7.64291 7.69539 7.78907 8.00628 8.18604 8.34996 8.49159 9.01510 9.58651 11.03171 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.007413 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.731815 B = 3776.333544 C = 4331.949505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C 0.159 3.841 4 N -0.535 5.535 5 C 0.059 3.941 6 C 0.062 3.938 7 N -0.536 5.536 8 C 0.214 3.786 9 H 0.038 0.962 10 C -0.541 4.541 11 H 0.058 0.942 12 C 0.068 3.932 13 N -0.887 5.887 14 Si 0.886 3.114 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.113 4.113 19 C -0.137 4.137 20 C 0.064 3.936 21 C 0.060 3.940 22 H 0.215 0.785 23 H 0.054 0.946 24 H 0.093 0.907 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.260 0.740 30 H 0.033 0.967 31 H 0.093 0.907 32 H 0.025 0.975 33 H 0.039 0.961 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.304 10.354 -5.934 12.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.170 4.170 3 C 0.032 3.968 4 N -0.260 5.260 5 C -0.069 4.069 6 C -0.066 4.066 7 N -0.260 5.260 8 C 0.108 3.892 9 H 0.056 0.944 10 C -0.580 4.580 11 H 0.076 0.924 12 C -0.134 4.134 13 N -0.525 5.525 14 Si 0.714 3.286 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.151 4.151 19 C -0.195 4.195 20 C -0.065 4.065 21 C -0.067 4.067 22 H 0.232 0.768 23 H 0.072 0.928 24 H 0.111 0.889 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.111 0.889 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.167 10.218 -5.792 12.463 hybrid contribution -0.714 -1.005 -0.264 1.261 sum -4.881 9.214 -6.056 12.058 Atomic orbital electron populations 1.24817 0.95834 1.00999 1.01239 1.22959 0.94297 0.99817 0.99942 1.19013 0.85043 0.93310 0.99395 1.62136 1.14852 1.39536 1.09467 1.22274 0.99551 0.98495 0.86550 1.21974 0.90296 0.95498 0.98858 1.62651 1.12011 1.44324 1.07056 1.19262 0.95619 0.85042 0.89302 0.94390 1.21759 1.22841 0.93361 1.20017 0.92403 1.24901 0.94947 0.98761 0.94820 1.69873 1.32092 1.25907 1.24668 0.86686 0.80258 0.83479 0.78140 1.20762 1.21256 1.20015 1.21629 0.96918 0.97577 0.98983 1.21706 0.99997 0.99815 0.97978 1.21903 0.99717 0.95322 0.89529 1.22241 0.85941 0.98843 0.99712 0.76801 0.92801 0.88858 0.94746 0.91440 0.93475 0.90809 0.92955 0.94856 0.88919 0.95629 0.94209 0.93516 0.93451 0.91310 0.91146 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.58 19.25 29.55 0.57 -2.01 16 2 C -0.17 -2.33 12.40 -37.12 -0.46 -2.79 16 3 C 0.16 2.08 5.46 -6.61 -0.04 2.04 16 4 N -0.53 -8.56 4.69 -237.97 -1.12 -9.67 16 5 C 0.06 0.99 5.43 -3.77 -0.02 0.97 16 6 C 0.06 1.24 4.96 -3.77 -0.02 1.23 16 7 N -0.54 -11.23 4.15 -227.87 -0.95 -12.18 16 8 C 0.21 5.22 1.75 -68.87 -0.12 5.10 16 9 H 0.04 1.03 8.11 -51.93 -0.42 0.61 16 10 C -0.54 -14.43 7.13 -34.44 -0.25 -14.67 16 11 H 0.06 1.58 5.80 -52.49 -0.30 1.28 16 12 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 13 N -0.89 -24.87 11.29 55.43 0.63 -24.24 16 14 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C -0.11 -2.65 5.07 -26.73 -0.14 -2.79 16 19 C -0.14 -2.79 9.80 37.16 0.36 -2.43 16 20 C 0.06 1.24 5.32 -3.76 -0.02 1.22 16 21 C 0.06 0.94 5.61 -3.77 -0.02 0.92 16 22 H 0.22 1.83 7.80 -54.10 -0.42 1.41 16 23 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 24 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.09 7.20 -51.93 -0.37 0.72 16 27 H 0.05 1.06 6.51 -51.92 -0.34 0.72 16 28 H 0.07 1.48 6.07 -51.93 -0.32 1.17 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.03 0.77 6.11 -51.93 -0.32 0.45 16 31 H 0.09 2.45 5.95 -51.93 -0.31 2.14 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 35 H 0.05 1.02 6.89 -51.93 -0.36 0.67 16 36 H 0.07 1.30 8.12 -51.94 -0.42 0.88 16 37 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 299.86 15.07 4.52 4.52 Total: -1.00 -28.20 299.86 -8.24 -36.45 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.07 Total: 0.29 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.24 Total: -11.45 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -1.44 Total: -46.09 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.20 -8.24 -36.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174714.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.124 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds