Wall clock time and date at job start Sun Mar 29 2020 21:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46906 * 109.47134 * 325.00394 * 3 2 1 5 5 C 1.46961 * 110.99734 * 293.80269 * 4 3 2 6 6 C 1.53049 * 109.36292 * 176.81247 * 5 4 3 7 7 N 1.46955 * 109.36716 * 58.39846 * 6 5 4 8 8 C 1.46896 * 111.00246 * 176.81294 * 7 6 5 9 9 H 1.09004 * 109.47327 * 178.79919 * 8 7 6 10 10 C 1.50703 * 109.47381 * 58.80079 * 8 7 6 11 11 H 1.07996 * 119.99595 * 359.97438 * 10 8 7 12 12 C 1.37869 * 120.00174 * 180.02562 * 10 8 7 13 13 N 1.31514 * 120.00228 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 119.99934 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47598 * 89.99476 * 14 12 10 16 16 H 1.48503 * 109.46856 * 209.99460 * 14 12 10 17 17 H 1.48504 * 109.46993 * 329.99065 * 14 12 10 18 18 C 1.52999 * 109.47119 * 298.79930 * 8 7 6 19 19 C 1.52995 * 109.47156 * 295.00074 * 18 8 7 20 20 C 1.46961 * 110.88206 * 300.68030 * 7 6 5 21 21 C 1.46952 * 110.99889 * 170.00109 * 4 3 2 22 22 H 4.40894 * 5.52106 * 179.97438 * 4 1 2 23 23 H 1.08993 * 109.46973 * 205.00426 * 3 2 1 24 24 H 1.08996 * 109.47311 * 85.00270 * 3 2 1 25 25 H 1.09003 * 109.48904 * 296.77641 * 5 4 3 26 26 H 1.09002 * 109.49205 * 56.84173 * 5 4 3 27 27 H 1.09008 * 109.48964 * 298.43140 * 6 5 4 28 28 H 1.09002 * 109.50883 * 178.37660 * 6 5 4 29 29 H 0.97000 * 120.00230 * 180.02562 * 13 12 10 30 30 H 1.09003 * 109.47240 * 54.99845 * 18 8 7 31 31 H 1.09000 * 109.47270 * 175.00215 * 18 8 7 32 32 H 1.08998 * 109.47268 * 180.02562 * 19 18 8 33 33 H 1.09002 * 109.47321 * 299.99740 * 19 18 8 34 34 H 1.09001 * 109.47638 * 59.99753 * 19 18 8 35 35 H 1.09003 * 109.48904 * 299.35325 * 20 7 6 36 36 H 1.08989 * 109.49349 * 179.28524 * 20 7 6 37 37 H 1.08999 * 109.49234 * 303.15264 * 21 4 3 38 38 H 1.08996 * 109.49284 * 63.22180 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.1337 0.7943 5 6 2.7896 -0.9719 2.2133 6 6 3.2465 -2.2080 2.9915 7 7 4.6959 -2.3818 2.8228 8 6 5.1861 -3.5162 3.6171 9 1 6.2577 -3.6355 3.4574 10 6 4.4718 -4.7732 3.1919 11 1 3.7278 -4.7333 2.4101 12 6 4.7674 -5.9739 3.8017 13 7 5.6730 -6.0224 4.7541 14 14 3.8825 -7.5321 3.2741 15 1 4.6418 -8.1858 2.1782 16 1 3.7828 -8.4600 4.4292 17 1 2.5191 -7.1892 2.7956 18 6 4.9177 -3.2540 5.1004 19 6 5.7412 -2.0502 5.5627 20 6 5.0426 -2.5437 1.4039 21 6 4.5857 -1.3075 0.6257 22 1 -1.0498 -0.0001 0.0003 23 1 3.0089 0.9321 0.4344 24 1 3.0094 -0.0887 -1.0237 25 1 3.2877 -0.0874 2.6107 26 1 1.7102 -0.8575 2.3133 27 1 2.7281 -3.0887 2.6121 28 1 3.0165 -2.0780 4.0490 29 1 5.8812 -6.8672 5.1828 30 1 3.8576 -3.0467 5.2467 31 1 5.1999 -4.1319 5.6815 32 1 5.5503 -1.8637 6.6195 33 1 6.8013 -2.2574 5.4164 34 1 5.4591 -1.1722 4.9817 35 1 4.5445 -3.4282 1.0065 36 1 6.1218 -2.6580 1.3039 37 1 4.8157 -1.4379 -0.4318 38 1 5.1041 -0.4269 1.0050 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174714.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:23 Heat of formation + Delta-G solvation = 47.546512 kcal Electronic energy + Delta-G solvation = -17378.829929 eV Core-core repulsion = 14836.126493 eV Total energy + Delta-G solvation = -2542.703435 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.35441 -37.69963 -34.92798 -33.72233 -32.71785 -31.69971 -29.52354 -27.73450 -25.43423 -24.56490 -23.97806 -21.37654 -20.55157 -18.99251 -18.28377 -17.37317 -16.49163 -16.09687 -15.83393 -15.73268 -15.33998 -15.11399 -14.65292 -14.03028 -13.80340 -13.68276 -13.39064 -13.22017 -12.87538 -12.64542 -12.51792 -12.19045 -12.09447 -12.03895 -11.64194 -11.55960 -11.36540 -11.09424 -11.01296 -10.93475 -10.41644 -9.31333 -8.91695 -8.02573 -6.24510 1.35553 1.37907 1.46816 1.79794 1.96390 2.40151 3.15258 3.16124 3.43032 3.57659 4.07035 4.25117 4.30090 4.47696 4.50221 4.61626 4.62076 4.71444 4.75506 4.76895 4.90340 4.90950 5.10530 5.13408 5.17076 5.27109 5.29522 5.43089 5.50212 5.64013 5.79868 6.00202 6.07248 6.14409 6.22495 6.41264 6.66481 6.75483 6.96326 7.45873 8.92092 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.007413 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.731815 B = 3776.333544 C = 4331.949505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.212 4.212 3 C 0.162 3.838 4 N -0.553 5.553 5 C 0.072 3.928 6 C 0.068 3.932 7 N -0.529 5.529 8 C 0.220 3.780 9 H 0.006 0.994 10 C -0.548 4.548 11 H 0.045 0.955 12 C 0.023 3.977 13 N -0.910 5.910 14 Si 0.943 3.057 15 H -0.278 1.278 16 H -0.281 1.281 17 H -0.277 1.277 18 C -0.108 4.108 19 C -0.125 4.125 20 C 0.063 3.937 21 C 0.071 3.929 22 H 0.244 0.756 23 H 0.069 0.931 24 H 0.112 0.888 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.014 0.986 28 H 0.069 0.931 29 H 0.261 0.739 30 H 0.032 0.968 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.033 0.967 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.212 11.771 -6.801 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.212 4.212 3 C 0.036 3.964 4 N -0.278 5.278 5 C -0.056 4.056 6 C -0.061 4.061 7 N -0.253 5.253 8 C 0.112 3.888 9 H 0.024 0.976 10 C -0.587 4.587 11 H 0.063 0.937 12 C -0.177 4.177 13 N -0.549 5.549 14 Si 0.770 3.230 15 H -0.204 1.204 16 H -0.206 1.206 17 H -0.202 1.202 18 C -0.146 4.146 19 C -0.182 4.182 20 C -0.066 4.066 21 C -0.056 4.056 22 H 0.261 0.739 23 H 0.086 0.914 24 H 0.129 0.871 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.033 0.967 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.079 11.650 -6.673 14.354 hybrid contribution -0.474 -1.438 -0.028 1.515 sum -5.553 10.212 -6.700 13.417 Atomic orbital electron populations 1.25662 0.96796 0.99387 0.99724 1.23363 0.95119 1.01323 1.01415 1.19069 0.84962 0.92560 0.99810 1.62064 1.14972 1.41737 1.09058 1.22071 0.99870 0.96656 0.86992 1.21919 0.89095 0.95957 0.99084 1.62616 1.12666 1.42231 1.07825 1.19041 0.93496 0.85639 0.90576 0.97608 1.21942 1.22518 0.94707 1.19552 0.93719 1.25558 0.95719 1.01401 0.95004 1.69988 1.33060 1.26478 1.25385 0.85791 0.79022 0.80328 0.77886 1.20357 1.20638 1.20169 1.21468 0.97342 0.97849 0.97947 1.21558 0.98882 0.98406 0.99354 1.21954 0.99461 0.96403 0.88794 1.22129 0.85997 0.96988 1.00488 0.73919 0.91360 0.87058 0.93783 0.90795 0.96747 0.91310 0.92924 0.94969 0.91922 0.93540 0.94767 0.92512 0.96461 0.91483 0.88566 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.30 19.25 74.32 1.43 -2.87 16 2 C -0.21 -5.31 12.40 31.12 0.39 -4.92 16 3 C 0.16 3.78 5.46 84.50 0.46 4.25 16 4 N -0.55 -16.63 4.69 -906.81 -4.25 -20.88 16 5 C 0.07 2.31 5.43 86.31 0.47 2.78 16 6 C 0.07 2.72 4.96 86.31 0.43 3.15 16 7 N -0.53 -22.32 4.15 -874.85 -3.63 -25.96 16 8 C 0.22 11.02 1.75 44.17 0.08 11.09 16 9 H 0.01 0.34 8.11 -2.39 -0.02 0.32 16 10 C -0.55 -30.13 7.13 25.60 0.18 -29.94 16 11 H 0.04 2.54 5.80 -2.91 -0.02 2.52 16 12 C 0.02 1.28 5.29 84.65 0.45 1.72 16 13 N -0.91 -52.14 11.29 21.44 0.24 -51.89 16 14 Si 0.94 44.42 29.54 68.60 2.03 46.44 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 18 C -0.11 -5.14 5.07 30.59 0.15 -4.98 16 19 C -0.12 -4.95 9.80 71.98 0.71 -4.25 16 20 C 0.06 2.42 5.32 86.31 0.46 2.88 16 21 C 0.07 2.08 5.61 86.31 0.48 2.57 16 22 H 0.24 3.33 7.80 -4.43 -0.03 3.30 16 23 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 24 H 0.11 2.16 8.03 -2.39 -0.02 2.15 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 2.27 7.20 -2.39 -0.02 2.26 16 27 H 0.01 0.66 6.51 -2.38 -0.02 0.65 16 28 H 0.07 2.77 6.07 -2.39 -0.01 2.76 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.03 1.50 6.11 -2.39 -0.01 1.49 16 31 H 0.06 3.39 5.95 -2.39 -0.01 3.37 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 2.13 7.75 -2.39 -0.02 2.11 16 35 H 0.02 0.76 6.89 -2.39 -0.02 0.75 16 36 H 0.07 2.56 8.12 -2.39 -0.02 2.54 16 37 H 0.10 2.33 8.07 -2.39 -0.02 2.31 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -61.47 299.86 1.09 -60.39 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.01 Total: 10.42 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 5.69 Total: -18.52 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -7.64 Total: -98.73 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -61.47 1.09 -60.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174714.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.934 kcal (2) G-P(sol) polarization free energy of solvation -61.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds