Wall clock time and date at job start Sun Mar 29 2020 22:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46970 * 2 1 4 4 C 1.53005 * 109.46854 * 240.00484 * 2 1 3 5 5 C 1.53004 * 109.46843 * 175.47257 * 4 2 1 6 6 C 1.53007 * 117.49673 * 243.74485 * 5 4 2 7 7 C 1.53005 * 117.49920 * 175.08809 * 5 4 2 8 8 N 1.46895 * 109.47676 * 120.00282 * 2 1 3 9 9 C 1.46898 * 110.99898 * 286.76240 * 8 2 1 10 10 C 1.50704 * 109.47334 * 203.79507 * 9 8 2 11 11 H 1.08001 * 119.99521 * 0.13922 * 10 9 8 12 12 C 1.37868 * 120.00132 * 180.14241 * 10 9 8 13 13 N 1.31513 * 120.00282 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 119.99897 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46955 * 59.99813 * 14 12 10 16 16 H 1.48505 * 109.47027 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47208 * 299.99816 * 14 12 10 18 18 C 1.46900 * 110.99962 * 50.71111 * 8 2 1 19 19 C 1.52995 * 109.47517 * 163.67231 * 18 8 2 20 20 C 1.47198 * 109.47737 * 184.51597 * 19 18 8 21 21 N 5.80808 * 86.21016 * 154.88698 * 2 1 3 22 22 H 1.09000 * 109.47150 * 299.99765 * 1 2 3 23 23 H 1.08995 * 109.47264 * 59.99779 * 1 2 3 24 24 H 1.08999 * 109.46970 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46949 * 295.46620 * 4 2 1 26 26 H 1.08999 * 109.47568 * 55.47311 * 4 2 1 27 27 H 1.09001 * 115.55181 * 29.41358 * 5 4 2 28 28 H 1.09002 * 117.49847 * 0.02562 * 6 5 4 29 29 H 1.08994 * 117.49745 * 145.02019 * 6 5 4 30 30 H 1.08993 * 117.49501 * 214.98016 * 7 5 4 31 31 H 1.09001 * 117.49180 * 359.97093 * 7 5 4 32 32 H 1.09003 * 109.47003 * 323.79291 * 9 8 2 33 33 H 1.09006 * 109.47499 * 83.79410 * 9 8 2 34 34 H 0.97004 * 120.00278 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.47254 * 43.66674 * 18 8 2 36 36 H 1.09005 * 109.47108 * 283.67486 * 18 8 2 37 37 H 1.09004 * 109.47111 * 304.51692 * 19 18 8 38 38 H 1.08995 * 109.47276 * 64.50805 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5657 -0.6233 -1.3076 6 6 4.1802 0.1430 -2.4807 7 6 4.2802 -1.3835 -2.4268 8 7 2.0198 -0.6925 1.1993 9 6 1.8224 0.1306 2.3999 10 6 2.8038 -0.2893 3.4638 11 1 3.5055 -1.0863 3.2668 12 6 2.8056 0.3438 4.6885 13 7 1.9514 1.3146 4.9283 14 14 4.0216 -0.1772 6.0075 15 1 5.4066 0.0090 5.5052 16 1 3.8203 0.6531 7.2222 17 1 3.8050 -1.6073 6.3433 18 6 1.3766 -2.0047 1.3491 19 6 2.1761 -2.8547 2.3385 20 6 1.5948 -4.2053 2.4068 21 7 1.1461 -5.2476 2.4596 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7444 -1.7695 -1.2097 26 1 1.6119 -0.2563 -2.1375 27 1 4.0697 -0.5562 -0.3434 28 1 3.4974 0.5778 -3.2108 29 1 5.0886 0.7139 -2.2884 30 1 5.2543 -1.8162 -2.1990 31 1 3.6632 -1.9537 -3.1213 32 1 1.9827 1.1798 2.1516 33 1 0.8059 -0.0041 2.7698 34 1 1.9530 1.7603 5.7898 35 1 1.3448 -2.5063 0.3819 36 1 0.3612 -1.8711 1.7225 37 1 3.2120 -2.9215 2.0058 38 1 2.1406 -2.3935 3.3254 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258474404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:02 Heat of formation + Delta-G solvation = 43.157493 kcal Electronic energy + Delta-G solvation = -17028.104302 eV Core-core repulsion = 14485.210545 eV Total energy + Delta-G solvation = -2542.893757 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.59609 -36.77097 -35.91778 -32.99675 -31.90524 -29.59761 -27.09307 -26.57472 -23.42257 -22.18125 -21.93871 -20.27841 -18.83608 -17.39049 -16.10139 -15.44733 -15.02916 -14.65665 -14.52394 -14.24311 -13.70940 -13.21126 -12.77747 -12.72870 -12.35016 -12.11014 -12.06963 -11.83536 -11.39107 -11.33268 -11.16603 -10.94254 -10.86676 -10.75051 -10.43972 -10.40844 -10.34408 -9.86453 -9.65415 -9.39752 -9.27082 -8.45259 -7.34348 -6.07819 -4.09093 3.19767 3.26090 3.30527 3.35732 3.37572 4.08349 4.33028 4.47370 4.90358 5.05531 5.18954 5.23665 5.28179 5.51586 5.55961 5.64172 5.77462 5.80542 5.86498 5.91521 5.99386 6.03685 6.11479 6.18286 6.29327 6.30314 6.47260 6.53095 6.68816 6.74770 6.81982 7.17765 7.29704 7.75659 8.02187 8.05874 8.13022 8.46738 8.97393 9.54536 11.01897 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.008092 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.507571 B = 3459.460868 C = 4062.154800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.084 3.916 3 H 0.081 0.919 4 C -0.079 4.079 5 C -0.128 4.128 6 C -0.190 4.190 7 C -0.191 4.191 8 N -0.525 5.525 9 C 0.190 3.810 10 C -0.511 4.511 11 H 0.071 0.929 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.891 3.109 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.276 1.276 18 C 0.074 3.926 19 C -0.038 4.038 20 C 0.222 3.778 21 N -0.475 5.475 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.028 0.972 33 H -0.002 1.002 34 H 0.262 0.738 35 H 0.062 0.938 36 H 0.034 0.966 37 H 0.109 0.891 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 -1.686 -11.055 11.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.025 4.025 3 H 0.099 0.901 4 C -0.117 4.117 5 C -0.146 4.146 6 C -0.227 4.227 7 C -0.228 4.228 8 N -0.249 5.249 9 C 0.065 3.935 10 C -0.549 4.549 11 H 0.089 0.911 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.718 3.282 15 H -0.201 1.201 16 H -0.215 1.215 17 H -0.201 1.201 18 C -0.056 4.056 19 C -0.078 4.078 20 C -0.095 4.095 21 N -0.153 5.153 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.142 0.858 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.016 0.984 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.127 0.873 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.048 -3.178 -10.883 11.385 hybrid contribution -0.064 0.436 0.879 0.983 sum 0.984 -2.741 -10.004 10.420 Atomic orbital electron populations 1.22497 0.98380 1.01635 1.01821 1.21665 0.91744 0.98353 0.90726 0.90130 1.21261 0.93044 1.00450 0.96943 1.22379 0.95310 1.02370 0.94581 1.23006 1.03138 0.94109 1.02425 1.22918 1.02226 0.94232 1.03395 1.62192 1.55990 1.02644 1.04026 1.19834 0.95749 0.92491 0.85429 1.21256 1.17853 1.19051 0.96788 0.91071 1.24991 0.95778 0.95071 0.98600 1.69936 1.36262 1.23506 1.23689 0.86677 0.81799 0.78596 0.81089 1.20105 1.21481 1.20147 1.21768 0.95301 0.91437 0.97060 1.19899 0.99737 0.82141 1.06039 1.29869 0.92645 0.95127 0.91814 1.81106 1.10447 1.13169 1.10616 0.92104 0.93172 0.92834 0.91824 0.92554 0.85839 0.89544 0.89347 0.89349 0.89633 0.95401 0.98438 0.92835 0.92007 0.94783 0.87253 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.47 37.16 0.31 -2.35 16 2 C 0.08 1.30 2.27 -67.71 -0.15 1.14 16 3 H 0.08 1.33 7.72 -51.93 -0.40 0.93 16 4 C -0.08 -1.04 4.95 -26.73 -0.13 -1.17 16 5 C -0.13 -1.71 5.61 -90.61 -0.51 -2.22 16 6 C -0.19 -2.23 10.18 -26.69 -0.27 -2.51 16 7 C -0.19 -2.22 10.25 -26.69 -0.27 -2.50 16 8 N -0.52 -9.30 3.78 -228.08 -0.86 -10.16 16 9 C 0.19 4.26 4.13 -4.97 -0.02 4.24 16 10 C -0.51 -12.39 7.07 -34.44 -0.24 -12.63 16 11 H 0.07 1.64 6.19 -52.49 -0.32 1.31 16 12 C 0.06 1.49 5.46 -17.82 -0.10 1.39 16 13 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 14 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.07 1.20 3.52 -3.83 -0.01 1.19 16 19 C -0.04 -0.61 4.52 -29.52 -0.13 -0.75 16 20 C 0.22 3.74 15.43 -20.76 -0.32 3.42 16 21 N -0.48 -8.87 18.54 42.15 0.78 -8.09 16 22 H 0.06 0.99 7.41 -51.93 -0.39 0.60 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.74 6.66 -51.93 -0.35 0.40 16 25 H 0.06 0.83 6.27 -51.93 -0.33 0.50 16 26 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 27 H 0.12 1.92 7.67 -51.93 -0.40 1.52 16 28 H 0.09 0.94 8.03 -51.93 -0.42 0.52 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.69 7.61 -51.93 -0.40 0.30 16 33 H 0.00 -0.05 7.39 -51.93 -0.38 -0.44 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.06 0.90 6.04 -51.93 -0.31 0.58 16 36 H 0.03 0.58 6.89 -51.93 -0.36 0.23 16 37 H 0.11 1.63 8.04 -51.93 -0.42 1.21 16 38 H 0.14 2.62 5.61 -51.93 -0.29 2.33 16 LS Contribution 308.60 15.07 4.65 4.65 Total: -1.00 -26.67 308.60 -7.56 -34.22 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.99 Total: 1.06 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -1.85 Total: -12.73 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.66 Total: -42.27 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.67 -7.56 -34.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258474404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.381 kcal (2) G-P(sol) polarization free energy of solvation -26.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds