Wall clock time and date at job start Sun Mar 29 2020 22:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46970 * 2 1 4 4 C 1.53005 * 109.46854 * 240.00484 * 2 1 3 5 5 C 1.53004 * 109.46843 * 175.47257 * 4 2 1 6 6 C 1.53007 * 117.49673 * 243.74485 * 5 4 2 7 7 C 1.53005 * 117.49920 * 175.08809 * 5 4 2 8 8 N 1.46895 * 109.47676 * 120.00282 * 2 1 3 9 9 C 1.46898 * 110.99898 * 286.76240 * 8 2 1 10 10 C 1.50704 * 109.47334 * 203.79507 * 9 8 2 11 11 H 1.08001 * 119.99521 * 0.13922 * 10 9 8 12 12 C 1.37868 * 120.00132 * 180.14241 * 10 9 8 13 13 N 1.31513 * 120.00282 * 359.97438 * 12 10 9 14 14 Si 1.86809 * 119.99897 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46955 * 59.99813 * 14 12 10 16 16 H 1.48505 * 109.47027 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47208 * 299.99816 * 14 12 10 18 18 C 1.46900 * 110.99962 * 50.71111 * 8 2 1 19 19 C 1.52995 * 109.47517 * 163.67231 * 18 8 2 20 20 C 1.47198 * 109.47737 * 184.51597 * 19 18 8 21 21 N 5.80808 * 86.21016 * 154.88698 * 2 1 3 22 22 H 1.09000 * 109.47150 * 299.99765 * 1 2 3 23 23 H 1.08995 * 109.47264 * 59.99779 * 1 2 3 24 24 H 1.08999 * 109.46970 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46949 * 295.46620 * 4 2 1 26 26 H 1.08999 * 109.47568 * 55.47311 * 4 2 1 27 27 H 1.09001 * 115.55181 * 29.41358 * 5 4 2 28 28 H 1.09002 * 117.49847 * 0.02562 * 6 5 4 29 29 H 1.08994 * 117.49745 * 145.02019 * 6 5 4 30 30 H 1.08993 * 117.49501 * 214.98016 * 7 5 4 31 31 H 1.09001 * 117.49180 * 359.97093 * 7 5 4 32 32 H 1.09003 * 109.47003 * 323.79291 * 9 8 2 33 33 H 1.09006 * 109.47499 * 83.79410 * 9 8 2 34 34 H 0.97004 * 120.00278 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.47254 * 43.66674 * 18 8 2 36 36 H 1.09005 * 109.47108 * 283.67486 * 18 8 2 37 37 H 1.09004 * 109.47111 * 304.51692 * 19 18 8 38 38 H 1.08995 * 109.47276 * 64.50805 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5657 -0.6233 -1.3076 6 6 4.1802 0.1430 -2.4807 7 6 4.2802 -1.3835 -2.4268 8 7 2.0198 -0.6925 1.1993 9 6 1.8224 0.1306 2.3999 10 6 2.8038 -0.2893 3.4638 11 1 3.5055 -1.0863 3.2668 12 6 2.8056 0.3438 4.6885 13 7 1.9514 1.3146 4.9283 14 14 4.0216 -0.1772 6.0075 15 1 5.4066 0.0090 5.5052 16 1 3.8203 0.6531 7.2222 17 1 3.8050 -1.6073 6.3433 18 6 1.3766 -2.0047 1.3491 19 6 2.1761 -2.8547 2.3385 20 6 1.5948 -4.2053 2.4068 21 7 1.1461 -5.2476 2.4596 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7444 -1.7695 -1.2097 26 1 1.6119 -0.2563 -2.1375 27 1 4.0697 -0.5562 -0.3434 28 1 3.4974 0.5778 -3.2108 29 1 5.0886 0.7139 -2.2884 30 1 5.2543 -1.8162 -2.1990 31 1 3.6632 -1.9537 -3.1213 32 1 1.9827 1.1798 2.1516 33 1 0.8059 -0.0041 2.7698 34 1 1.9530 1.7603 5.7898 35 1 1.3448 -2.5063 0.3819 36 1 0.3612 -1.8711 1.7225 37 1 3.2120 -2.9215 2.0058 38 1 2.1406 -2.3935 3.3254 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258474404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:02 Heat of formation + Delta-G solvation = 29.548040 kcal Electronic energy + Delta-G solvation = -17028.694453 eV Core-core repulsion = 14485.210545 eV Total energy + Delta-G solvation = -2543.483907 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.90970 -37.94172 -37.26867 -34.80168 -33.32578 -31.13419 -28.31342 -28.20894 -24.95685 -23.57887 -23.03692 -21.37197 -20.16820 -18.96284 -17.73855 -16.85608 -16.30473 -16.20569 -16.01021 -15.47764 -14.96224 -14.64804 -14.20697 -14.04108 -13.84729 -13.66726 -13.41753 -13.07560 -12.90500 -12.77117 -12.47372 -12.43643 -12.22367 -12.14499 -11.92640 -11.79119 -11.67486 -11.18162 -11.15399 -10.79025 -10.48502 -10.42858 -8.86285 -8.05827 -6.12137 1.51337 1.52156 1.58243 1.81828 1.88494 2.49382 3.02405 3.13856 3.27418 3.66442 3.88719 4.18025 4.24249 4.29044 4.36203 4.41943 4.53425 4.68375 4.72514 4.78793 4.91188 4.93232 5.04014 5.10948 5.12481 5.19293 5.30990 5.34305 5.41572 5.44412 5.47355 5.51088 5.74735 5.84025 6.24148 6.50834 6.66395 6.76573 7.04247 7.55828 9.03704 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.008092 C = 0.006891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.507571 B = 3459.460868 C = 4062.154800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.082 3.918 3 H 0.063 0.937 4 C -0.067 4.067 5 C -0.148 4.148 6 C -0.186 4.186 7 C -0.178 4.178 8 N -0.521 5.521 9 C 0.207 3.793 10 C -0.506 4.506 11 H 0.086 0.914 12 C 0.003 3.997 13 N -0.937 5.937 14 Si 0.950 3.050 15 H -0.269 1.269 16 H -0.297 1.297 17 H -0.266 1.266 18 C 0.076 3.924 19 C -0.028 4.028 20 C 0.244 3.756 21 N -0.502 5.502 22 H 0.032 0.968 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.099 0.901 32 H -0.003 1.003 33 H -0.030 1.030 34 H 0.259 0.741 35 H 0.088 0.912 36 H 0.023 0.977 37 H 0.128 0.872 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 -2.975 -12.690 13.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.027 4.027 3 H 0.081 0.919 4 C -0.105 4.105 5 C -0.166 4.166 6 C -0.223 4.223 7 C -0.215 4.215 8 N -0.245 5.245 9 C 0.081 3.919 10 C -0.544 4.544 11 H 0.104 0.896 12 C -0.194 4.194 13 N -0.578 5.578 14 Si 0.776 3.224 15 H -0.194 1.194 16 H -0.223 1.223 17 H -0.190 1.190 18 C -0.054 4.054 19 C -0.068 4.068 20 C -0.073 4.073 21 N -0.180 5.180 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.015 0.985 33 H -0.012 1.012 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.042 0.958 37 H 0.146 0.854 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.870 -4.487 -12.540 13.449 hybrid contribution -0.325 0.857 1.316 1.604 sum 1.544 -3.630 -11.224 11.897 Atomic orbital electron populations 1.22421 0.97529 1.02108 1.01642 1.21730 0.92433 0.97736 0.90791 0.91857 1.21161 0.92919 1.00471 0.95919 1.22243 0.95351 1.04808 0.94182 1.23082 1.03156 0.94529 1.01568 1.22978 1.02216 0.94210 1.02114 1.62109 1.56601 1.02798 1.02980 1.19452 0.93807 0.91545 0.87078 1.21674 1.17517 1.18424 0.96809 0.89640 1.25773 0.97406 0.95283 1.00969 1.70080 1.38429 1.25245 1.24050 0.85722 0.79917 0.78433 0.78309 1.19366 1.22310 1.19046 1.21802 0.94530 0.90625 0.98415 1.19764 1.00745 0.81509 1.04764 1.29777 0.91780 0.94749 0.90946 1.81137 1.11399 1.14053 1.11452 0.94851 0.90796 0.91981 0.91171 0.90613 0.88427 0.88329 0.89398 0.89010 0.88291 0.98480 1.01186 0.93259 0.89334 0.95826 0.85394 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.98 8.47 71.98 0.61 -4.37 16 2 C 0.08 2.45 2.27 44.92 0.10 2.55 16 3 H 0.06 2.11 7.72 -2.39 -0.02 2.10 16 4 C -0.07 -1.58 4.95 30.60 0.15 -1.43 16 5 C -0.15 -3.63 5.61 -10.79 -0.06 -3.69 16 6 C -0.19 -3.94 10.18 30.62 0.31 -3.63 16 7 C -0.18 -3.62 10.25 30.62 0.31 -3.31 16 8 N -0.52 -18.29 3.78 -875.51 -3.31 -21.59 16 9 C 0.21 9.57 4.13 85.56 0.35 9.93 16 10 C -0.51 -24.67 7.07 25.60 0.18 -24.49 16 11 H 0.09 3.84 6.19 -2.91 -0.02 3.82 16 12 C 0.00 0.18 5.46 84.65 0.46 0.64 16 13 N -0.94 -53.36 13.29 21.44 0.28 -53.08 16 14 Si 0.95 41.28 29.54 68.60 2.03 43.31 16 15 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 C 0.08 2.35 3.52 86.30 0.30 2.65 16 19 C -0.03 -0.85 4.52 28.79 0.13 -0.72 16 20 C 0.24 7.77 15.43 89.44 1.38 9.15 16 21 N -0.50 -17.92 18.54 20.00 0.37 -17.55 16 22 H 0.03 1.10 7.41 -2.39 -0.02 1.08 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 1.62 6.66 -2.39 -0.02 1.60 16 25 H 0.07 1.57 6.27 -2.39 -0.02 1.56 16 26 H 0.08 1.53 7.88 -2.39 -0.02 1.51 16 27 H 0.10 2.94 7.67 -2.39 -0.02 2.92 16 28 H 0.10 1.84 8.03 -2.39 -0.02 1.83 16 29 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.00 -0.15 7.61 -2.39 -0.02 -0.17 16 33 H -0.03 -1.52 7.39 -2.38 -0.02 -1.53 16 34 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 35 H 0.09 2.31 6.04 -2.39 -0.01 2.30 16 36 H 0.02 0.79 6.89 -2.38 -0.02 0.78 16 37 H 0.13 3.49 8.04 -2.39 -0.02 3.47 16 38 H 0.12 4.32 5.61 -2.39 -0.01 4.31 16 Total: -1.00 -57.61 308.60 4.65 -52.96 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.03 Total: 12.66 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 4.24 Total: -16.71 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -2.65 Total: -92.22 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -57.61 4.65 -52.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258474404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.508 kcal (2) G-P(sol) polarization free energy of solvation -57.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds