Wall clock time and date at job start Sun Mar 29 2020 22:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47093 * 2 1 4 4 C 1.53002 * 109.47464 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47088 * 184.69580 * 4 2 1 6 6 C 1.53004 * 117.49597 * 245.20463 * 5 4 2 7 7 C 1.52996 * 117.49597 * 176.58645 * 5 4 2 8 8 N 1.46901 * 109.47148 * 240.00273 * 2 1 3 9 9 C 1.46897 * 111.00042 * 308.60398 * 8 2 1 10 10 C 1.50699 * 109.47230 * 190.00056 * 9 8 2 11 11 H 1.07998 * 120.00151 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99842 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00269 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99907 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46867 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46845 * 120.00148 * 14 12 10 17 17 H 1.48493 * 109.47374 * 240.00593 * 14 12 10 18 18 C 1.46896 * 110.99999 * 72.55950 * 8 2 1 19 19 C 1.52999 * 109.47490 * 72.27328 * 18 8 2 20 20 C 1.47194 * 109.47423 * 181.16216 * 19 18 8 21 21 N 5.36397 * 99.10827 * 301.59952 * 2 1 3 22 22 H 1.09002 * 109.46617 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47249 * 299.99559 * 1 2 3 24 24 H 1.08997 * 109.47400 * 60.00489 * 1 2 3 25 25 H 1.09000 * 109.46996 * 304.69347 * 4 2 1 26 26 H 1.08998 * 109.46760 * 64.69460 * 4 2 1 27 27 H 1.08998 * 115.55218 * 30.91375 * 5 4 2 28 28 H 1.09002 * 117.49731 * 359.97438 * 6 5 4 29 29 H 1.09000 * 117.49977 * 145.02178 * 6 5 4 30 30 H 1.09003 * 117.49788 * 214.97674 * 7 5 4 31 31 H 1.09001 * 117.50444 * 359.97077 * 7 5 4 32 32 H 1.09007 * 109.47264 * 310.00285 * 9 8 2 33 33 H 1.09001 * 109.47358 * 70.00007 * 9 8 2 34 34 H 0.97002 * 120.00124 * 179.97438 * 13 12 10 35 35 H 1.09007 * 109.46779 * 192.26815 * 18 8 2 36 36 H 1.09000 * 109.47360 * 312.26590 * 18 8 2 37 37 H 1.09005 * 109.46689 * 301.15913 * 19 18 8 38 38 H 1.09000 * 109.47270 * 61.15829 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5655 -0.6197 1.3096 6 6 4.3656 -1.9174 1.1793 7 6 4.2651 -1.2133 2.5339 8 7 2.0197 -0.6924 -1.1995 9 6 1.3884 -2.0113 -1.3405 10 6 2.0848 -2.7878 -2.4283 11 1 2.9136 -2.3459 -2.9613 12 6 1.6643 -4.0628 -2.7424 13 7 0.6553 -4.6012 -2.0931 14 14 2.5270 -5.0250 -4.0913 15 1 3.6222 -4.2016 -4.6637 16 1 3.0929 -6.2748 -3.5232 17 1 1.5520 -5.3636 -5.1589 18 6 1.8076 0.1240 -2.4021 19 6 2.7887 1.2981 -2.4011 20 6 2.5575 2.1317 -3.5919 21 7 2.3791 2.7752 -4.5111 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.6097 -0.2583 2.1372 26 1 1.7471 -1.7703 1.2081 27 1 3.9943 0.2822 0.8730 28 1 3.8051 -2.8435 1.0511 29 1 5.3209 -1.8694 0.6568 30 1 5.1544 -0.7021 2.9026 31 1 3.6386 -1.6758 3.2967 32 1 1.4674 -2.5546 -0.3988 33 1 0.3373 -1.8852 -1.6001 34 1 0.3592 -5.4980 -2.3143 35 1 1.9730 -0.4868 -3.2897 36 1 0.7861 0.5041 -2.4078 37 1 2.6372 1.8972 -1.5031 38 1 3.8102 0.9180 -2.4163 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258474405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:04 Heat of formation + Delta-G solvation = 42.635184 kcal Electronic energy + Delta-G solvation = -17106.467256 eV Core-core repulsion = 14563.550850 eV Total energy + Delta-G solvation = -2542.916406 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.55459 -36.72092 -35.99193 -32.77974 -32.11160 -29.78516 -27.03475 -26.32421 -23.22738 -22.39187 -21.83050 -20.16582 -18.63684 -17.22691 -16.59046 -15.48429 -14.97330 -14.62305 -14.50662 -14.03372 -13.68403 -13.38800 -12.97085 -12.68667 -12.25628 -12.08441 -11.91672 -11.82207 -11.71929 -11.18978 -11.03185 -11.00216 -10.76068 -10.74256 -10.65666 -10.33533 -10.13705 -9.74451 -9.57882 -9.31044 -9.15300 -8.44135 -7.25062 -6.04397 -4.04668 2.98050 3.01805 3.29838 3.38322 3.42101 4.19954 4.32418 4.42986 5.00386 5.05491 5.31925 5.36489 5.38161 5.46632 5.55287 5.64339 5.69399 5.78273 5.95553 5.96352 6.03496 6.11864 6.26923 6.31876 6.41314 6.44322 6.50904 6.60258 6.66263 6.73724 6.86818 7.28228 7.36156 7.77139 7.81329 8.08095 8.16129 8.53260 9.03316 9.59631 11.06170 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.009934 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.297829 B = 2817.882159 C = 4004.709231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.080 3.920 3 H 0.068 0.932 4 C -0.081 4.081 5 C -0.121 4.121 6 C -0.159 4.159 7 C -0.204 4.204 8 N -0.520 5.520 9 C 0.194 3.806 10 C -0.505 4.505 11 H 0.064 0.936 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.891 3.109 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.286 1.286 18 C 0.062 3.938 19 C -0.027 4.027 20 C 0.219 3.781 21 N -0.458 5.458 22 H 0.067 0.933 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.037 0.963 33 H -0.006 1.006 34 H 0.260 0.740 35 H 0.093 0.907 36 H 0.030 0.970 37 H 0.100 0.900 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.754 7.895 7.465 11.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.030 4.030 3 H 0.087 0.913 4 C -0.118 4.118 5 C -0.139 4.139 6 C -0.196 4.196 7 C -0.241 4.241 8 N -0.244 5.244 9 C 0.069 3.931 10 C -0.544 4.544 11 H 0.082 0.918 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.213 1.213 18 C -0.068 4.068 19 C -0.068 4.068 20 C -0.099 4.099 21 N -0.136 5.136 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.012 0.988 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.049 0.951 37 H 0.118 0.882 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.894 8.608 6.155 11.276 hybrid contribution -0.437 -0.842 -0.463 1.056 sum 3.456 7.766 5.691 10.230 Atomic orbital electron populations 1.22475 0.98429 1.02915 1.00785 1.21703 0.91954 0.97290 0.92015 0.91350 1.21237 0.92882 1.01704 0.95990 1.21993 0.94288 0.97630 0.99999 1.22853 1.01777 0.97178 0.97825 1.22997 1.02811 1.06156 0.92120 1.62247 1.58510 1.04137 0.99484 1.19741 0.92454 0.83196 0.97673 1.21214 1.16004 0.99106 1.18057 0.91820 1.24948 0.95165 0.97698 0.96657 1.69954 1.26616 1.15701 1.41469 0.86541 0.79575 0.80044 0.81866 1.19666 1.21102 1.21274 1.21911 0.94926 0.93009 0.96938 1.19441 1.03879 0.94497 0.88962 1.29439 0.92575 0.93272 0.94593 1.81163 1.09562 1.11225 1.11659 0.91416 0.93314 0.93048 0.92486 0.90913 0.88464 0.88578 0.89568 0.89876 0.89662 0.94545 0.98803 0.93064 0.88827 0.95138 0.88187 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 8.43 37.16 0.31 -2.51 16 2 C 0.08 1.18 2.17 -67.71 -0.15 1.03 16 3 H 0.07 0.87 6.35 -51.93 -0.33 0.54 16 4 C -0.08 -1.18 4.93 -26.73 -0.13 -1.31 16 5 C -0.12 -1.67 5.46 -90.62 -0.49 -2.17 16 6 C -0.16 -2.39 10.18 -26.73 -0.27 -2.66 16 7 C -0.20 -2.59 10.25 -26.74 -0.27 -2.86 16 8 N -0.52 -9.22 4.10 -228.08 -0.93 -10.16 16 9 C 0.19 4.45 3.58 -4.98 -0.02 4.43 16 10 C -0.51 -13.01 8.28 -34.44 -0.29 -13.29 16 11 H 0.06 1.63 7.26 -52.49 -0.38 1.25 16 12 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 13 N -0.90 -25.45 13.29 55.43 0.74 -24.72 16 14 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 15 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.06 1.01 4.67 -3.83 -0.02 0.99 16 19 C -0.03 -0.34 5.79 -29.52 -0.17 -0.51 16 20 C 0.22 3.18 15.43 -20.76 -0.32 2.86 16 21 N -0.46 -7.80 18.54 42.16 0.78 -7.02 16 22 H 0.07 1.19 6.54 -51.93 -0.34 0.85 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.77 6.60 -51.93 -0.34 0.43 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.26 6.03 -51.93 -0.31 0.95 16 27 H 0.10 1.26 8.09 -51.93 -0.42 0.84 16 28 H 0.10 1.65 8.04 -51.93 -0.42 1.24 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.04 0.91 6.14 -51.93 -0.32 0.59 16 33 H -0.01 -0.15 6.83 -51.93 -0.35 -0.50 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.09 1.77 6.59 -51.93 -0.34 1.42 16 36 H 0.03 0.50 6.39 -51.93 -0.33 0.17 16 37 H 0.10 1.02 6.55 -51.93 -0.34 0.68 16 38 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -28.29 309.97 -7.58 -35.88 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.90 Total: -0.04 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.92 Total: -14.57 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.58 Total: -41.90 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.29 -7.58 -35.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258474405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.512 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds