Wall clock time and date at job start Sun Mar 29 2020 22:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47093 * 2 1 4 4 C 1.53002 * 109.47464 * 119.99989 * 2 1 3 5 5 C 1.53000 * 109.47088 * 184.69580 * 4 2 1 6 6 C 1.53004 * 117.49597 * 245.20463 * 5 4 2 7 7 C 1.52996 * 117.49597 * 176.58645 * 5 4 2 8 8 N 1.46901 * 109.47148 * 240.00273 * 2 1 3 9 9 C 1.46897 * 111.00042 * 308.60398 * 8 2 1 10 10 C 1.50699 * 109.47230 * 190.00056 * 9 8 2 11 11 H 1.07998 * 120.00151 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99842 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00269 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99907 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46867 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46845 * 120.00148 * 14 12 10 17 17 H 1.48493 * 109.47374 * 240.00593 * 14 12 10 18 18 C 1.46896 * 110.99999 * 72.55950 * 8 2 1 19 19 C 1.52999 * 109.47490 * 72.27328 * 18 8 2 20 20 C 1.47194 * 109.47423 * 181.16216 * 19 18 8 21 21 N 5.36397 * 99.10827 * 301.59952 * 2 1 3 22 22 H 1.09002 * 109.46617 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47249 * 299.99559 * 1 2 3 24 24 H 1.08997 * 109.47400 * 60.00489 * 1 2 3 25 25 H 1.09000 * 109.46996 * 304.69347 * 4 2 1 26 26 H 1.08998 * 109.46760 * 64.69460 * 4 2 1 27 27 H 1.08998 * 115.55218 * 30.91375 * 5 4 2 28 28 H 1.09002 * 117.49731 * 359.97438 * 6 5 4 29 29 H 1.09000 * 117.49977 * 145.02178 * 6 5 4 30 30 H 1.09003 * 117.49788 * 214.97674 * 7 5 4 31 31 H 1.09001 * 117.50444 * 359.97077 * 7 5 4 32 32 H 1.09007 * 109.47264 * 310.00285 * 9 8 2 33 33 H 1.09001 * 109.47358 * 70.00007 * 9 8 2 34 34 H 0.97002 * 120.00124 * 179.97438 * 13 12 10 35 35 H 1.09007 * 109.46779 * 192.26815 * 18 8 2 36 36 H 1.09000 * 109.47360 * 312.26590 * 18 8 2 37 37 H 1.09005 * 109.46689 * 301.15913 * 19 18 8 38 38 H 1.09000 * 109.47270 * 61.15829 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5655 -0.6197 1.3096 6 6 4.3656 -1.9174 1.1793 7 6 4.2651 -1.2133 2.5339 8 7 2.0197 -0.6924 -1.1995 9 6 1.3884 -2.0113 -1.3405 10 6 2.0848 -2.7878 -2.4283 11 1 2.9136 -2.3459 -2.9613 12 6 1.6643 -4.0628 -2.7424 13 7 0.6553 -4.6012 -2.0931 14 14 2.5270 -5.0250 -4.0913 15 1 3.6222 -4.2016 -4.6637 16 1 3.0929 -6.2748 -3.5232 17 1 1.5520 -5.3636 -5.1589 18 6 1.8076 0.1240 -2.4021 19 6 2.7887 1.2981 -2.4011 20 6 2.5575 2.1317 -3.5919 21 7 2.3791 2.7752 -4.5111 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.6097 -0.2583 2.1372 26 1 1.7471 -1.7703 1.2081 27 1 3.9943 0.2822 0.8730 28 1 3.8051 -2.8435 1.0511 29 1 5.3209 -1.8694 0.6568 30 1 5.1544 -0.7021 2.9026 31 1 3.6386 -1.6758 3.2967 32 1 1.4674 -2.5546 -0.3988 33 1 0.3373 -1.8852 -1.6001 34 1 0.3592 -5.4980 -2.3143 35 1 1.9730 -0.4868 -3.2897 36 1 0.7861 0.5041 -2.4078 37 1 2.6372 1.8972 -1.5031 38 1 3.8102 0.9180 -2.4163 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258474405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:03 Heat of formation + Delta-G solvation = 26.753125 kcal Electronic energy + Delta-G solvation = -17107.155954 eV Core-core repulsion = 14563.550850 eV Total energy + Delta-G solvation = -2543.605104 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.88356 -37.89208 -37.24320 -34.76522 -33.32547 -31.32507 -28.31907 -28.00677 -24.83169 -23.88994 -22.92475 -21.29594 -20.04842 -18.59748 -18.28075 -16.79364 -16.53681 -16.19012 -15.78249 -15.26675 -15.00965 -14.79292 -14.25737 -14.14266 -13.94036 -13.41640 -13.26620 -13.16753 -12.99069 -12.81979 -12.68792 -12.30398 -12.15790 -12.10323 -12.06404 -11.77628 -11.70414 -11.13532 -11.05430 -10.73052 -10.52379 -10.41915 -8.77748 -8.11850 -6.17829 1.41160 1.43914 1.54607 1.80107 1.87613 2.44612 3.01754 3.22414 3.23038 3.69379 3.90483 4.20331 4.26180 4.32437 4.40567 4.48216 4.52116 4.65702 4.81585 4.85893 4.92584 4.99738 5.09463 5.10100 5.19737 5.25979 5.30762 5.33477 5.36048 5.48686 5.51440 5.62372 5.73713 5.77386 6.21488 6.50195 6.65172 6.84390 7.01347 7.50802 8.98561 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.009934 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.297829 B = 2817.882159 C = 4004.709231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.078 3.922 3 H 0.110 0.890 4 C -0.079 4.079 5 C -0.118 4.118 6 C -0.185 4.185 7 C -0.181 4.181 8 N -0.516 5.516 9 C 0.215 3.785 10 C -0.508 4.508 11 H 0.065 0.935 12 C 0.002 3.998 13 N -0.935 5.935 14 Si 0.952 3.048 15 H -0.262 1.262 16 H -0.283 1.283 17 H -0.287 1.287 18 C 0.062 3.938 19 C -0.011 4.011 20 C 0.242 3.758 21 N -0.504 5.504 22 H 0.029 0.971 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.081 0.919 26 H 0.034 0.966 27 H 0.119 0.881 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.011 0.989 33 H -0.037 1.037 34 H 0.259 0.741 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.138 0.862 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 9.982 8.289 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.031 4.031 3 H 0.127 0.873 4 C -0.116 4.116 5 C -0.136 4.136 6 C -0.223 4.223 7 C -0.218 4.218 8 N -0.239 5.239 9 C 0.089 3.911 10 C -0.547 4.547 11 H 0.083 0.917 12 C -0.195 4.195 13 N -0.576 5.576 14 Si 0.778 3.222 15 H -0.186 1.186 16 H -0.209 1.209 17 H -0.213 1.213 18 C -0.068 4.068 19 C -0.051 4.051 20 C -0.075 4.075 21 N -0.182 5.182 22 H 0.048 0.952 23 H 0.095 0.905 24 H 0.069 0.931 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.137 0.863 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.029 0.971 33 H -0.019 1.019 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.155 0.845 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.417 10.716 6.979 13.888 hybrid contribution -0.941 -1.485 -0.665 1.880 sum 4.476 9.230 6.314 12.045 Atomic orbital electron populations 1.22420 0.98679 1.00887 1.02141 1.21910 0.91808 0.98839 0.90514 0.87254 1.21208 0.93948 0.99544 0.96920 1.22081 0.93421 0.97382 1.00743 1.22759 1.02030 0.96644 1.00818 1.23050 1.03240 1.04492 0.90993 1.62130 1.57864 1.02682 1.01266 1.19264 0.90658 0.85762 0.95387 1.21601 1.15611 0.99279 1.18205 0.91666 1.25739 0.95912 0.98996 0.98853 1.70080 1.28292 1.16031 1.43232 0.85592 0.78667 0.78717 0.79218 1.18614 1.20942 1.21335 1.21841 0.96268 0.93687 0.95012 1.19419 1.03336 0.92873 0.89454 1.29689 0.91222 0.92378 0.94164 1.81197 1.11002 1.12952 1.13045 0.95157 0.90464 0.93125 0.90036 0.94769 0.86288 0.92180 0.89122 0.87476 0.89618 0.97052 1.01936 0.93209 0.91940 0.95252 0.84469 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.29 8.43 71.98 0.61 -4.68 16 2 C 0.08 2.12 2.17 44.92 0.10 2.22 16 3 H 0.11 2.18 6.35 -2.39 -0.02 2.17 16 4 C -0.08 -2.17 4.93 30.60 0.15 -2.02 16 5 C -0.12 -2.95 5.46 -10.79 -0.06 -3.01 16 6 C -0.19 -5.45 10.18 30.59 0.31 -5.14 16 7 C -0.18 -4.13 10.25 30.59 0.31 -3.81 16 8 N -0.52 -17.85 4.10 -875.52 -3.59 -21.44 16 9 C 0.22 10.23 3.58 85.56 0.31 10.54 16 10 C -0.51 -26.79 8.28 25.60 0.21 -26.57 16 11 H 0.07 3.35 7.26 -2.91 -0.02 3.33 16 12 C 0.00 0.13 5.46 84.65 0.46 0.59 16 13 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 14 Si 0.95 43.71 29.54 68.60 2.03 45.74 16 15 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 18 C 0.06 1.93 4.67 86.30 0.40 2.33 16 19 C -0.01 -0.23 5.79 28.79 0.17 -0.06 16 20 C 0.24 6.42 15.43 89.44 1.38 7.80 16 21 N -0.50 -16.37 18.54 20.00 0.37 -16.00 16 22 H 0.03 1.09 6.54 -2.39 -0.02 1.07 16 23 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.05 1.45 6.60 -2.39 -0.02 1.44 16 25 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.03 1.21 6.03 -2.39 -0.01 1.20 16 27 H 0.12 2.50 8.09 -2.39 -0.02 2.48 16 28 H 0.06 2.18 8.04 -2.39 -0.02 2.16 16 29 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.11 1.97 8.14 -2.39 -0.02 1.96 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.01 0.60 6.14 -2.38 -0.01 0.59 16 33 H -0.04 -1.97 6.83 -2.39 -0.02 -1.99 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.06 2.34 6.59 -2.38 -0.02 2.33 16 36 H 0.03 0.92 6.39 -2.39 -0.02 0.91 16 37 H 0.14 1.99 6.55 -2.38 -0.02 1.97 16 38 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -64.21 309.97 4.48 -59.73 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 1.04 Total: 8.49 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 4.35 Total: -21.81 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -2.93 Total: -92.15 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -64.21 4.48 -59.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258474405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.482 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds