Wall clock time and date at job start Sun Mar 29 2020 22:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86799 * 119.99440 * 2 1 4 4 H 1.48502 * 109.46857 * 269.99958 * 3 2 1 5 5 H 1.48501 * 109.47370 * 30.00236 * 3 2 1 6 6 H 1.48507 * 109.46951 * 150.00653 * 3 2 1 7 7 C 1.39034 * 120.00224 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99829 * 0.02562 * 7 2 1 9 9 N 1.36893 * 119.99770 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99700 * 179.97438 * 9 7 2 11 11 O 1.21605 * 120.00163 * 0.02562 * 10 9 7 12 12 C 1.47644 * 119.99939 * 179.97438 * 10 9 7 13 13 C 1.39944 * 120.02938 * 0.02562 * 12 10 9 14 14 C 1.37851 * 120.24853 * 180.02562 * 13 12 10 15 15 C 1.38462 * 120.30936 * 359.97438 * 14 13 12 16 16 F 1.35096 * 119.97814 * 179.97438 * 15 14 13 17 17 C 1.40276 * 120.04945 * 359.97438 * 15 14 13 18 18 C 1.47016 * 120.12561 * 179.97438 * 17 15 14 19 19 O 1.21274 * 119.99737 * 0.02562 * 18 17 15 20 20 C 1.39276 * 120.03220 * 180.29942 * 12 10 9 21 21 H 0.96993 * 120.00571 * 359.97438 * 1 2 3 22 22 H 0.96998 * 120.00015 * 359.97438 * 9 7 2 23 23 H 1.08003 * 119.87379 * 0.02562 * 13 12 10 24 24 H 1.08005 * 119.84566 * 179.97438 * 14 13 12 25 25 H 1.08000 * 120.00637 * 179.72556 * 18 17 15 26 26 H 1.08005 * 120.14914 * 359.97438 * 20 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4951 2.0465 -1.4001 5 1 1.4450 2.6527 0.7001 6 1 3.5453 1.4403 0.6999 7 6 2.0090 -1.2040 -0.0005 8 1 1.4690 -2.1394 -0.0014 9 7 3.3779 -1.2039 -0.0011 10 6 4.0518 -2.3711 -0.0011 11 8 3.4439 -3.4242 -0.0011 12 6 5.5283 -2.3710 -0.0022 13 6 6.2286 -1.1594 -0.0028 14 6 7.6071 -1.1541 -0.0044 15 6 8.3105 -2.3467 -0.0049 16 9 9.6614 -2.3337 -0.0070 17 6 7.6214 -3.5686 -0.0033 18 6 8.3666 -4.8359 -0.0044 19 8 9.5793 -4.8263 -0.0063 20 6 6.2254 -3.5768 -0.0085 21 1 -0.4851 0.8399 0.0004 22 1 3.8629 -0.3639 -0.0014 23 1 5.6869 -0.2250 -0.0019 24 1 8.1409 -0.2152 -0.0052 25 1 7.8341 -5.7755 0.0013 26 1 5.6883 -4.5138 -0.0122 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001292650851.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:42 Heat of formation + Delta-G solvation = -107.073482 kcal Electronic energy + Delta-G solvation = -15687.995475 eV Core-core repulsion = 12645.742058 eV Total energy + Delta-G solvation = -3042.253417 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 237.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.07654 -41.13162 -40.07241 -38.67053 -36.19676 -33.98905 -32.69509 -31.84146 -27.30580 -25.99772 -24.18903 -23.03675 -21.27299 -20.46715 -18.80939 -18.44026 -17.49067 -17.06744 -16.85617 -16.79174 -15.88632 -15.66793 -15.62903 -15.14171 -15.01713 -14.76099 -14.43551 -14.13474 -13.83049 -13.28833 -12.95453 -12.58948 -12.42723 -12.00794 -11.60103 -10.92379 -10.65308 -10.36126 -10.32094 -9.91322 -8.49262 -6.07404 -0.68860 -0.17446 1.17477 1.28058 1.37482 1.42963 1.94640 2.18414 2.64186 2.68044 2.93945 3.19142 3.19489 3.53904 3.81863 3.95321 4.05988 4.36116 4.52357 4.80204 4.84234 4.92547 5.13690 5.44387 5.59455 5.87569 6.33642 6.47239 6.76170 7.25632 7.80121 8.66912 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.043784 B = 0.006152 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.354419 B = 4550.067633 C = 5179.578817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.954 3.046 4 H -0.252 1.252 5 H -0.271 1.271 6 H -0.227 1.227 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.568 5.568 10 C 0.482 3.518 11 O -0.620 6.620 12 C -0.145 4.145 13 C -0.035 4.035 14 C -0.156 4.156 15 C 0.150 3.850 16 F -0.126 7.126 17 C -0.235 4.235 18 C 0.393 3.607 19 O -0.492 6.492 20 C 0.014 3.986 21 H 0.283 0.717 22 H 0.390 0.610 23 H 0.155 0.845 24 H 0.178 0.822 25 H 0.162 0.838 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.296 1.191 0.011 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.209 4.209 3 Si 0.773 3.227 4 H -0.176 1.176 5 H -0.196 1.196 6 H -0.150 1.150 7 C -0.460 4.460 8 H 0.082 0.918 9 N -0.207 5.207 10 C 0.272 3.728 11 O -0.508 6.508 12 C -0.148 4.148 13 C -0.055 4.055 14 C -0.174 4.174 15 C 0.130 3.870 16 F -0.104 7.104 17 C -0.237 4.237 18 C 0.254 3.746 19 O -0.366 6.366 20 C -0.006 4.006 21 H 0.093 0.907 22 H 0.227 0.773 23 H 0.172 0.828 24 H 0.195 0.805 25 H 0.178 0.822 26 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 16.356 0.629 0.010 16.368 hybrid contribution -0.271 0.928 0.003 0.967 sum 16.085 1.557 0.013 16.160 Atomic orbital electron populations 1.69758 1.08175 1.29758 1.48115 1.26154 0.96476 1.02742 0.95502 0.85523 0.79926 0.76798 0.80432 1.17610 1.19594 1.14971 1.19088 0.81024 0.95474 1.50409 0.91775 1.41933 1.06166 1.07440 1.65149 1.18222 0.87475 0.83763 0.83363 1.90632 1.70684 1.32267 1.57195 1.20001 0.92149 0.95506 1.07169 1.21609 0.93848 0.97767 0.92230 1.21277 0.93804 0.98170 1.04153 1.18409 0.76906 0.94592 0.97103 1.91556 1.28809 1.97352 1.92729 1.21167 0.94615 0.96002 1.11933 1.24590 0.88454 0.93116 0.68482 1.90568 1.18754 1.90917 1.36386 1.21418 0.91164 0.98901 0.89073 0.90674 0.77322 0.82784 0.80492 0.82234 0.82223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.51 13.95 21.68 0.30 -52.21 15 2 C -0.01 -0.41 5.50 84.95 0.47 0.05 15 3 Si 0.95 35.50 27.74 68.60 1.90 37.41 15 4 H -0.25 -8.83 7.11 99.48 0.71 -8.12 15 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 15 6 H -0.23 -6.84 6.52 99.48 0.65 -6.19 15 7 C -0.33 -18.38 10.16 84.09 0.85 -17.53 15 8 H 0.06 4.24 7.38 -2.91 -0.02 4.22 15 9 N -0.57 -25.43 5.03 -309.79 -1.56 -26.99 15 10 C 0.48 21.01 7.72 86.73 0.67 21.68 15 11 O -0.62 -32.65 15.90 -4.05 -0.06 -32.71 15 12 C -0.14 -4.52 5.87 -20.13 -0.12 -4.64 15 13 C -0.04 -0.85 9.53 22.59 0.22 -0.63 15 14 C -0.16 -3.16 9.99 22.23 0.22 -2.93 15 15 C 0.15 3.62 7.30 22.82 0.17 3.78 15 16 F -0.13 -3.36 15.53 44.97 0.70 -2.66 15 17 C -0.24 -5.55 5.87 -20.15 -0.12 -5.67 15 18 C 0.39 8.15 11.45 70.12 0.80 8.96 15 19 O -0.49 -13.92 16.15 -3.01 -0.05 -13.97 15 20 C 0.01 0.37 9.33 22.85 0.21 0.58 15 21 H 0.28 14.71 8.31 -92.71 -0.77 13.94 15 22 H 0.39 14.15 3.77 -92.71 -0.35 13.80 15 23 H 0.15 3.11 6.38 -2.91 -0.02 3.09 15 24 H 0.18 2.40 8.06 -2.91 -0.02 2.37 15 25 H 0.16 1.84 8.06 -2.91 -0.02 1.81 15 26 H 0.16 4.01 7.64 -2.91 -0.02 3.99 15 Total: -1.00 -73.36 247.35 5.44 -67.92 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.83 Total: 19.56 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 3.37 Total: 3.66 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -1.26 Total: -79.20 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -0.11 Total: -46.68 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.70 Total: -2.66 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 1.90 Total: 37.41 kcal Total: -73.36 5.44 -67.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292650851.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.152 kcal (2) G-P(sol) polarization free energy of solvation -73.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds