Wall clock time and date at job start Sun Mar 29 2020 22:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39787 * 120.18517 * 126.06206 * 3 2 1 5 5 C 1.37696 * 119.94911 * 179.97438 * 4 3 2 6 6 C 1.38884 * 120.33487 * 359.97438 * 5 4 3 7 7 F 1.35099 * 119.80967 * 179.97438 * 6 5 4 8 8 C 1.38244 * 120.37871 * 359.74420 * 6 5 4 9 9 C 1.38874 * 120.04275 * 0.51418 * 8 6 5 10 10 S 1.76192 * 120.16793 * 179.76829 * 9 8 6 11 11 C 1.81404 * 102.99967 * 359.72009 * 10 9 8 12 12 C 1.50701 * 109.47098 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 H 1.08000 * 120.02532 * 359.97438 * 4 3 2 21 21 H 1.08000 * 119.82750 * 180.02562 * 5 4 3 22 22 H 1.08002 * 119.97902 * 180.25494 * 8 6 5 23 23 H 1.09002 * 109.47124 * 60.00075 * 11 10 9 24 24 H 1.09001 * 109.46975 * 300.00196 * 11 10 9 25 25 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2705 0.7123 -0.9768 5 6 4.6475 0.7100 -0.9719 6 6 5.3443 0.0038 0.0001 7 9 6.6953 0.0084 -0.0054 8 6 4.6634 -0.6999 0.9760 9 6 3.2747 -0.7127 0.9827 10 16 2.4036 -1.6135 2.2213 11 6 3.7383 -2.3354 3.2154 12 6 3.1455 -3.1497 4.3364 13 1 2.0733 -3.2258 4.4402 14 6 3.9723 -3.7986 5.2290 15 7 5.2780 -3.7064 5.1023 16 14 3.2376 -4.8085 6.6180 17 1 2.3994 -5.8951 6.0504 18 1 4.3302 -5.3994 7.4319 19 1 2.3991 -3.9336 7.4765 20 1 2.7337 1.2634 -1.7347 21 1 5.1883 1.2608 -1.7272 22 1 5.2118 -1.2434 1.7311 23 1 4.3532 -1.5377 3.6321 24 1 4.3539 -2.9775 2.5855 25 1 5.8596 -4.1626 5.7304 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307137315.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:58 Heat of formation + Delta-G solvation = -18.168119 kcal Electronic energy + Delta-G solvation = -13244.764484 eV Core-core repulsion = 10649.119163 eV Total energy + Delta-G solvation = -2595.645320 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.01006 -40.15841 -37.43348 -35.39318 -32.58382 -31.99568 -30.67943 -25.67727 -24.58806 -24.27424 -20.29597 -19.19358 -18.48077 -17.64322 -17.12711 -16.70853 -16.49050 -15.47912 -15.18396 -15.06656 -14.78392 -14.62646 -14.57153 -14.30639 -13.65139 -13.45690 -13.19487 -12.88577 -12.75880 -12.56062 -11.85953 -11.69492 -11.11214 -10.95610 -10.67584 -9.93618 -8.55653 -8.39101 -6.53588 -0.48872 0.04297 0.55991 1.39781 1.41495 1.46976 1.51220 1.71230 1.75208 2.33095 2.64657 2.80288 2.96697 3.18098 3.67711 4.00303 4.17129 4.30130 4.74042 4.80827 4.82440 4.88064 5.00568 5.11035 5.49608 5.67184 5.77240 6.40796 6.52565 7.15673 8.72419 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.026779 B = 0.006996 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.346321 B = 4001.273574 C = 5031.474123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.277 3.723 3 C -0.048 4.048 4 C 0.001 3.999 5 C -0.148 4.148 6 C 0.148 3.852 7 F -0.135 7.135 8 C -0.190 4.190 9 C -0.017 4.017 10 S -0.144 6.144 11 C 0.075 3.925 12 C -0.547 4.547 13 H 0.064 0.936 14 C 0.024 3.976 15 N -0.918 5.918 16 Si 0.974 3.026 17 H -0.267 1.267 18 H -0.275 1.275 19 H -0.267 1.267 20 H 0.190 0.810 21 H 0.190 0.810 22 H 0.126 0.874 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.398 8.719 -11.988 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.038 4.038 3 C -0.059 4.059 4 C -0.021 4.021 5 C -0.170 4.170 6 C 0.126 3.874 7 F -0.114 7.114 8 C -0.216 4.216 9 C -0.134 4.134 10 S 0.105 5.895 11 C -0.072 4.072 12 C -0.586 4.586 13 H 0.082 0.918 14 C -0.179 4.179 15 N -0.555 5.555 16 Si 0.797 3.203 17 H -0.192 1.192 18 H -0.200 1.200 19 H -0.192 1.192 20 H 0.207 0.793 21 H 0.207 0.793 22 H 0.144 0.856 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.369 8.433 -11.595 14.403 hybrid contribution 1.964 -0.731 1.005 2.324 sum 0.595 7.703 -10.591 13.109 Atomic orbital electron populations 1.81186 1.12778 1.09520 1.08857 1.25531 0.92537 0.92838 0.92847 1.15749 0.83914 1.06123 1.00121 1.21355 0.93098 0.93016 0.94602 1.21380 0.94086 1.01755 0.99761 1.17928 0.76777 0.96983 0.95695 1.91527 1.29138 1.94706 1.95989 1.21126 0.92960 1.05206 1.02272 1.21914 0.95611 0.98328 0.97545 1.85640 1.18339 1.57004 1.28480 1.21143 0.92685 0.97585 0.95821 1.20876 0.93720 1.31940 1.12025 0.91820 1.25813 0.95077 0.96935 1.00055 1.70018 1.03818 1.43407 1.38300 0.85367 0.78180 0.78674 0.78109 1.19187 1.19967 1.19195 0.79308 0.79320 0.85563 0.95032 0.95040 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.25 18.54 19.00 0.35 -14.90 15 2 C 0.28 8.41 14.28 88.33 1.26 9.67 15 3 C -0.05 -1.28 5.76 -21.10 -0.12 -1.40 15 4 C 0.00 0.01 9.75 22.52 0.22 0.23 15 5 C -0.15 -2.37 10.00 22.30 0.22 -2.15 15 6 C 0.15 3.67 7.30 22.43 0.16 3.83 15 7 F -0.14 -3.49 17.26 44.97 0.78 -2.72 15 8 C -0.19 -6.13 9.33 22.42 0.21 -5.92 15 9 C -0.02 -0.56 6.15 22.97 0.14 -0.42 15 10 S -0.14 -6.14 20.83 -56.49 -1.18 -7.32 15 11 C 0.07 3.77 4.09 71.24 0.29 4.06 15 12 C -0.55 -30.06 9.13 25.60 0.23 -29.82 15 13 H 0.06 3.48 7.71 -2.91 -0.02 3.46 15 14 C 0.02 1.27 5.46 84.66 0.46 1.74 15 15 N -0.92 -51.86 13.29 21.45 0.28 -51.57 15 16 Si 0.97 42.42 29.54 68.60 2.03 44.44 15 17 H -0.27 -11.33 7.11 99.48 0.71 -10.63 15 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 20 H 0.19 1.49 8.06 -2.91 -0.02 1.47 15 21 H 0.19 1.46 8.06 -2.91 -0.02 1.43 15 22 H 0.13 4.75 5.89 -2.91 -0.02 4.73 15 23 H 0.03 1.66 7.74 -2.39 -0.02 1.64 15 24 H 0.03 1.65 7.76 -2.39 -0.02 1.63 15 25 H 0.27 14.44 8.31 -92.71 -0.77 13.67 15 Total: -1.00 -62.84 255.55 6.57 -56.26 By element: Atomic # 1 Polarization: -5.24 SS G_CDS: 1.23 Total: -4.02 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.08 Total: -20.18 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: 0.64 Total: -66.48 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.72 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -6.14 SS G_CDS: -1.18 Total: -7.32 kcal Total: -62.84 6.57 -56.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307137315.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.095 kcal (2) G-P(sol) polarization free energy of solvation -62.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds