Wall clock time and date at job start Sun Mar 29 2020 22:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47513 * 2.62395 * 3 2 1 5 5 C 1.36887 * 120.00397 * 264.57630 * 4 3 2 6 6 H 1.08003 * 120.00408 * 128.89155 * 5 4 3 7 7 C 1.39006 * 119.99939 * 308.89151 * 5 4 3 8 8 N 1.31400 * 119.99977 * 3.84260 * 7 5 4 9 9 Si 1.86799 * 120.00119 * 183.84554 * 7 5 4 10 10 H 1.48497 * 109.47554 * 90.00056 * 9 7 5 11 11 H 1.48506 * 109.47077 * 210.00051 * 9 7 5 12 12 H 1.48503 * 109.47138 * 329.99710 * 9 7 5 13 13 C 1.34777 * 119.99687 * 84.57135 * 4 3 2 14 14 O 1.21727 * 120.00349 * 4.17688 * 13 4 3 15 15 C 1.46569 * 120.00013 * 184.17714 * 13 4 3 16 16 C 1.36772 * 126.17963 * 173.16061 * 15 13 4 17 17 N 1.30946 * 113.92206 * 180.02562 * 16 15 13 18 18 C 1.29376 * 117.46641 * 0.02562 * 17 16 15 19 19 S 1.70921 * 110.59473 * 359.97438 * 18 17 16 20 20 H 1.08999 * 109.47235 * 242.62298 * 3 2 1 21 21 H 1.08998 * 109.47293 * 122.62787 * 3 2 1 22 22 H 0.97003 * 120.00139 * 180.02562 * 8 7 5 23 23 H 1.07998 * 123.04302 * 0.03710 * 16 15 13 24 24 H 1.07995 * 124.70520 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0970 -1.3788 -0.0632 5 6 3.4311 -2.0401 1.0878 6 1 3.0234 -3.0205 1.2852 7 6 4.2953 -1.4497 2.0027 8 7 4.7317 -0.2270 1.7996 9 14 4.8361 -2.3944 3.5207 10 1 6.0756 -3.1534 3.2159 11 1 5.0990 -1.4417 4.6291 12 1 3.7637 -3.3391 3.9240 13 6 3.2178 -1.9970 -1.2548 14 8 2.9936 -1.3856 -2.2832 15 6 3.6192 -3.4055 -1.3124 16 6 3.6542 -4.1899 -2.4322 17 7 4.0510 -5.4176 -2.2084 18 6 4.3534 -5.7343 -0.9910 19 16 4.1427 -4.3943 0.0490 20 1 2.9711 0.4734 0.9125 21 1 2.9710 0.5549 -0.8655 22 1 5.3350 0.1849 2.4379 23 1 3.3796 -3.8294 -3.4125 24 1 4.6921 -6.7101 -0.6756 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318245041.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:32 Heat of formation + Delta-G solvation = 42.583175 kcal Electronic energy + Delta-G solvation = -14219.419638 eV Core-core repulsion = 11646.328653 eV Total energy + Delta-G solvation = -2573.090985 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.29833 -38.34535 -35.87129 -34.91431 -32.03684 -30.14806 -27.72093 -25.71278 -24.48632 -21.07071 -19.39858 -18.44183 -17.64897 -16.26603 -15.74452 -15.27895 -14.85113 -14.30303 -14.02607 -13.29357 -13.19378 -13.17010 -12.83664 -12.16023 -12.10831 -11.61739 -11.49632 -11.36887 -10.73184 -10.68635 -10.55761 -9.74309 -9.09619 -8.82881 -8.70319 -8.36755 -7.89695 -6.87400 -4.77669 1.00116 2.06910 2.52228 2.90615 2.97674 3.01356 3.17128 3.30400 3.54332 3.76754 4.04177 4.49034 4.54011 4.92414 5.08109 5.76072 5.83753 6.03644 6.30476 6.64722 6.73866 6.94553 7.45293 7.81573 8.27459 8.27804 8.53687 8.90869 9.36667 10.14636 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.014286 C = 0.009008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.334310 B = 1959.477226 C = 3107.606848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.214 3.786 3 C 0.204 3.796 4 N -0.436 5.436 5 C -0.351 4.351 6 H 0.101 0.899 7 C 0.068 3.932 8 N -0.845 5.845 9 Si 0.909 3.091 10 H -0.262 1.262 11 H -0.274 1.274 12 H -0.258 1.258 13 C 0.560 3.440 14 O -0.576 6.576 15 C -0.251 4.251 16 C 0.073 3.927 17 N -0.489 5.489 18 C -0.076 4.076 19 S 0.262 5.738 20 H 0.151 0.849 21 H 0.105 0.895 22 H 0.283 0.717 23 H 0.175 0.825 24 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.389 -4.598 2.677 6.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.104 4.104 3 C 0.077 3.923 4 N -0.156 5.156 5 C -0.484 4.484 6 H 0.118 0.882 7 C -0.143 4.143 8 N -0.478 5.478 9 Si 0.732 3.268 10 H -0.187 1.187 11 H -0.199 1.199 12 H -0.182 1.182 13 C 0.349 3.651 14 O -0.461 6.461 15 C -0.376 4.376 16 C -0.086 4.086 17 N -0.203 5.203 18 C -0.368 4.368 19 S 0.523 5.477 20 H 0.168 0.832 21 H 0.123 0.877 22 H 0.094 0.906 23 H 0.192 0.808 24 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.969 -4.510 2.947 5.736 hybrid contribution 0.550 -0.160 -0.051 0.575 sum 2.519 -4.670 2.895 6.045 Atomic orbital electron populations 1.80991 1.13714 1.08804 1.11372 1.30570 0.96336 0.92362 0.91126 1.19187 0.78444 0.87334 1.07317 1.42996 1.56301 1.11344 1.04918 1.19377 1.28239 1.02235 0.98551 0.88230 1.25656 0.93551 0.95643 0.99488 1.69594 1.29201 1.12338 1.36686 0.86150 0.80357 0.80107 0.80146 1.18704 1.19858 1.18219 1.17238 0.79384 0.84512 0.83953 1.90719 1.55406 1.66051 1.33911 1.25948 1.14128 1.00359 0.97167 1.22277 0.99493 0.87577 0.99206 1.66239 1.14345 1.18145 1.21595 1.29412 1.04560 1.07334 0.95472 1.85008 1.55092 0.98424 1.09210 0.83194 0.87693 0.90577 0.80803 0.80122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.55 18.54 42.15 0.78 -9.77 14 2 C 0.21 4.58 15.71 -20.76 -0.33 4.25 14 3 C 0.20 4.21 5.35 -6.83 -0.04 4.17 14 4 N -0.44 -9.78 2.45 -119.46 -0.29 -10.08 14 5 C -0.35 -7.63 6.83 -15.01 -0.10 -7.73 14 6 H 0.10 2.11 5.45 -34.03 -0.19 1.92 14 7 C 0.07 1.44 5.34 -17.45 -0.09 1.35 14 8 N -0.85 -18.41 11.20 55.50 0.62 -17.78 14 9 Si 0.91 16.32 29.55 -169.99 -5.02 11.30 14 10 H -0.26 -4.61 7.11 56.52 0.40 -4.21 14 11 H -0.27 -4.93 7.11 56.52 0.40 -4.52 14 12 H -0.26 -4.53 7.11 56.52 0.40 -4.13 14 13 C 0.56 12.96 7.54 -12.90 -0.10 12.86 14 14 O -0.58 -14.34 16.53 5.16 0.09 -14.25 14 15 C -0.25 -5.22 6.35 -36.75 -0.23 -5.45 14 16 C 0.07 1.44 11.17 -18.46 -0.21 1.23 14 17 N -0.49 -9.09 10.50 -15.13 -0.16 -9.25 14 18 C -0.08 -1.23 12.21 51.73 0.63 -0.59 14 19 S 0.26 4.61 18.62 -107.50 -2.00 2.60 14 20 H 0.15 3.08 5.77 -51.93 -0.30 2.78 14 21 H 0.11 2.09 7.53 -51.93 -0.39 1.70 14 22 H 0.28 5.78 8.31 -40.82 -0.34 5.44 14 23 H 0.17 3.22 8.06 -52.49 -0.42 2.80 14 24 H 0.18 2.22 8.06 -52.49 -0.42 1.79 14 LS Contribution 242.37 15.07 3.65 3.65 Total: -1.00 -26.26 242.37 -3.66 -29.92 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -0.86 Total: 3.57 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -0.46 Total: 10.08 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.95 Total: -46.87 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.25 kcal Atomic # 14 Polarization: 16.32 SS G_CDS: -5.02 Total: 11.30 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -2.00 Total: 2.60 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -26.26 -3.66 -29.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318245041.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.501 kcal (2) G-P(sol) polarization free energy of solvation -26.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds