Wall clock time and date at job start Sun Mar 29 2020 22:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46882 * 291.42755 * 3 2 1 5 5 C 1.36772 * 120.00286 * 97.47498 * 4 3 2 6 6 H 1.07997 * 119.99977 * 157.74412 * 5 4 3 7 7 C 1.39092 * 119.99698 * 337.75276 * 5 4 3 8 8 N 1.31344 * 119.99853 * 356.38259 * 7 5 4 9 9 Si 1.86795 * 120.00004 * 176.38464 * 7 5 4 10 10 H 1.48500 * 109.47017 * 59.99842 * 9 7 5 11 11 H 1.48503 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47427 * 300.00015 * 9 7 5 13 13 C 1.34778 * 119.99934 * 277.47504 * 4 3 2 14 14 O 1.21685 * 120.00154 * 176.96997 * 13 4 3 15 15 C 1.47073 * 120.00344 * 357.24088 * 13 4 3 16 16 N 1.30649 * 125.53952 * 7.69417 * 15 13 4 17 17 C 1.30723 * 115.88218 * 179.81701 * 16 15 13 18 18 C 1.34237 * 115.78332 * 0.48042 * 17 16 15 19 19 S 1.71071 * 109.11135 * 359.73971 * 18 17 16 20 20 H 1.08997 * 109.46923 * 171.43317 * 3 2 1 21 21 H 1.08995 * 109.47282 * 51.42447 * 3 2 1 22 22 H 0.97002 * 119.99578 * 179.97438 * 8 7 5 23 23 H 1.07993 * 122.10808 * 180.20137 * 17 16 15 24 24 H 1.07998 * 125.44283 * 179.72630 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.5037 1.2857 5 6 3.4703 -1.8136 1.4092 6 1 4.1457 -2.1103 2.1979 7 6 2.9807 -2.7633 0.5187 8 7 2.1048 -2.4157 -0.3962 9 14 3.5690 -4.5331 0.6239 10 1 3.2336 -5.0875 1.9601 11 1 2.9008 -5.3402 -0.4284 12 1 5.0398 -4.5786 0.4241 13 6 3.1776 0.3230 2.3471 14 8 3.5307 -0.1083 3.4287 15 6 2.8335 1.7453 2.1994 16 7 2.3050 2.2924 1.1372 17 6 2.0724 3.5766 1.2125 18 6 2.4169 4.1656 2.3686 19 16 3.0737 2.9891 3.4226 20 1 2.9709 1.0170 -0.1531 21 1 2.9717 -0.6399 -0.8034 22 1 1.7636 -3.0780 -1.0174 23 1 1.6350 4.1297 0.3946 24 1 2.2985 5.2145 2.5966 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320978886.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:34 Heat of formation + Delta-G solvation = 65.656352 kcal Electronic energy + Delta-G solvation = -14324.046673 eV Core-core repulsion = 11751.956216 eV Total energy + Delta-G solvation = -2572.090457 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.65226 -38.15241 -35.70873 -34.30388 -32.07109 -30.06481 -27.39973 -26.26903 -24.38915 -21.29789 -19.49259 -18.00812 -17.49357 -16.51212 -16.01604 -15.18622 -14.55832 -14.23345 -14.19636 -13.19788 -13.01835 -12.93137 -12.74989 -11.88925 -11.54703 -11.30638 -11.21263 -11.13291 -10.57016 -10.53005 -10.42133 -9.46413 -9.33672 -9.23927 -8.86823 -8.49967 -8.17325 -6.63997 -4.18437 0.72228 1.64409 2.15623 2.85572 3.11274 3.14440 3.16467 3.72714 3.92691 4.05561 4.32161 4.48120 4.84925 5.05970 5.34611 5.50591 5.67069 5.71266 6.25129 6.62513 6.78605 7.24495 7.69846 7.93439 8.14078 8.78851 8.92593 8.98589 9.55312 10.33617 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.037435 B = 0.008939 C = 0.007548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.788915 B = 3131.706625 C = 3708.620442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.273 3.727 3 C 0.208 3.792 4 N -0.396 5.396 5 C -0.294 4.294 6 H 0.114 0.886 7 C 0.033 3.967 8 N -0.865 5.865 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.499 3.501 14 O -0.573 6.573 15 C 0.035 3.965 16 N -0.452 5.452 17 C 0.035 3.965 18 C -0.310 4.310 19 S 0.194 5.806 20 H 0.109 0.891 21 H 0.136 0.864 22 H 0.280 0.720 23 H 0.168 0.832 24 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.851 8.490 0.072 9.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.045 4.045 3 C 0.081 3.919 4 N -0.114 5.114 5 C -0.423 4.423 6 H 0.132 0.868 7 C -0.173 4.173 8 N -0.503 5.503 9 Si 0.769 3.231 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.193 1.193 13 C 0.286 3.714 14 O -0.458 6.458 15 C -0.239 4.239 16 N -0.170 5.170 17 C -0.121 4.121 18 C -0.452 4.452 19 S 0.449 5.551 20 H 0.126 0.874 21 H 0.154 0.846 22 H 0.091 0.909 23 H 0.185 0.815 24 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.552 7.858 1.023 8.326 hybrid contribution -0.051 -0.151 -0.910 0.924 sum 2.502 7.708 0.113 8.104 Atomic orbital electron populations 1.80847 1.13722 1.13613 1.09081 1.28929 0.94970 0.88651 0.91934 1.19344 0.82077 1.01177 0.89267 1.43473 1.51719 1.09298 1.06884 1.19954 1.25423 0.81269 1.15704 0.86805 1.25583 0.94932 1.01300 0.95522 1.69799 1.26846 1.36065 1.17583 0.85702 0.78982 0.79903 0.78534 1.19407 1.20581 1.19257 1.16583 0.87423 0.82453 0.84981 1.90709 1.54337 1.75528 1.25184 1.28289 1.03346 1.00115 0.92164 1.67253 1.14308 1.10186 1.25233 1.21737 1.02170 0.89965 0.98218 1.26532 1.12463 1.05990 1.00188 1.83841 1.54807 0.97853 1.18617 0.87401 0.84636 0.90879 0.81499 0.80975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.50 18.54 42.15 0.78 -11.72 14 2 C 0.27 6.53 12.55 -20.76 -0.26 6.26 14 3 C 0.21 4.54 4.75 -6.83 -0.03 4.51 14 4 N -0.40 -9.66 2.60 -119.29 -0.31 -9.97 14 5 C -0.29 -7.42 9.30 -15.03 -0.14 -7.56 14 6 H 0.11 2.92 7.40 -52.49 -0.39 2.53 14 7 C 0.03 0.78 5.25 -17.44 -0.09 0.69 14 8 N -0.86 -21.15 8.88 55.50 0.49 -20.66 14 9 Si 0.94 18.98 29.55 -169.99 -5.02 13.96 14 10 H -0.27 -5.56 7.11 56.52 0.40 -5.16 14 11 H -0.28 -5.59 7.11 56.52 0.40 -5.19 14 12 H -0.27 -5.20 7.11 56.52 0.40 -4.80 14 13 C 0.50 12.05 7.53 -12.68 -0.10 11.96 14 14 O -0.57 -15.21 16.66 5.20 0.09 -15.12 14 15 C 0.04 0.72 7.12 -14.47 -0.10 0.61 14 16 N -0.45 -8.50 6.18 -11.54 -0.07 -8.57 14 17 C 0.04 0.54 11.24 -19.43 -0.22 0.32 14 18 C -0.31 -4.19 11.09 29.32 0.33 -3.86 14 19 S 0.19 3.10 23.04 -107.50 -2.48 0.63 14 20 H 0.11 2.11 5.54 -51.93 -0.29 1.82 14 21 H 0.14 2.96 6.08 -51.93 -0.32 2.65 14 22 H 0.28 6.58 8.31 -40.82 -0.34 6.24 14 23 H 0.17 2.04 8.06 -52.49 -0.42 1.62 14 24 H 0.17 1.71 8.06 -52.49 -0.42 1.28 14 LS Contribution 239.04 15.07 3.60 3.60 Total: -1.00 -29.41 239.04 -4.51 -33.92 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -0.97 Total: 1.00 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -0.62 Total: 12.93 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.89 Total: -50.92 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.09 Total: -15.12 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.48 Total: 0.63 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.41 -4.51 -33.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320978886.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.573 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds