Wall clock time and date at job start Sun Mar 29 2020 22:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46882 * 291.42755 * 3 2 1 5 5 C 1.36772 * 120.00286 * 97.47498 * 4 3 2 6 6 H 1.07997 * 119.99977 * 157.74412 * 5 4 3 7 7 C 1.39092 * 119.99698 * 337.75276 * 5 4 3 8 8 N 1.31344 * 119.99853 * 356.38259 * 7 5 4 9 9 Si 1.86795 * 120.00004 * 176.38464 * 7 5 4 10 10 H 1.48500 * 109.47017 * 59.99842 * 9 7 5 11 11 H 1.48503 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47427 * 300.00015 * 9 7 5 13 13 C 1.34778 * 119.99934 * 277.47504 * 4 3 2 14 14 O 1.21685 * 120.00154 * 176.96997 * 13 4 3 15 15 C 1.47073 * 120.00344 * 357.24088 * 13 4 3 16 16 N 1.30649 * 125.53952 * 7.69417 * 15 13 4 17 17 C 1.30723 * 115.88218 * 179.81701 * 16 15 13 18 18 C 1.34237 * 115.78332 * 0.48042 * 17 16 15 19 19 S 1.71071 * 109.11135 * 359.73971 * 18 17 16 20 20 H 1.08997 * 109.46923 * 171.43317 * 3 2 1 21 21 H 1.08995 * 109.47282 * 51.42447 * 3 2 1 22 22 H 0.97002 * 119.99578 * 179.97438 * 8 7 5 23 23 H 1.07993 * 122.10808 * 180.20137 * 17 16 15 24 24 H 1.07998 * 125.44283 * 179.72630 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.5037 1.2857 5 6 3.4703 -1.8136 1.4092 6 1 4.1457 -2.1103 2.1979 7 6 2.9807 -2.7633 0.5187 8 7 2.1048 -2.4157 -0.3962 9 14 3.5690 -4.5331 0.6239 10 1 3.2336 -5.0875 1.9601 11 1 2.9008 -5.3402 -0.4284 12 1 5.0398 -4.5786 0.4241 13 6 3.1776 0.3230 2.3471 14 8 3.5307 -0.1083 3.4287 15 6 2.8335 1.7453 2.1994 16 7 2.3050 2.2924 1.1372 17 6 2.0724 3.5766 1.2125 18 6 2.4169 4.1656 2.3686 19 16 3.0737 2.9891 3.4226 20 1 2.9709 1.0170 -0.1531 21 1 2.9717 -0.6399 -0.8034 22 1 1.7636 -3.0780 -1.0174 23 1 1.6350 4.1297 0.3946 24 1 2.2985 5.2145 2.5966 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320978886.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:34 Heat of formation + Delta-G solvation = 46.514049 kcal Electronic energy + Delta-G solvation = -14324.876746 eV Core-core repulsion = 11751.956216 eV Total energy + Delta-G solvation = -2572.920530 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.19634 -39.75626 -37.59832 -36.20382 -33.87059 -31.43752 -29.17811 -27.83942 -26.02883 -22.80882 -20.97532 -19.83683 -18.93971 -18.19906 -17.70123 -16.83499 -16.11591 -15.86023 -15.71004 -14.85992 -14.72486 -14.52783 -14.20488 -13.73420 -13.38757 -13.14840 -12.89817 -12.45446 -12.38922 -12.12430 -12.09760 -11.19879 -11.06393 -10.57931 -10.50540 -10.04023 -9.78077 -8.42909 -6.10038 -0.63053 0.29121 0.89346 1.37433 1.47259 1.58044 1.61999 1.95913 2.19837 2.31634 2.49102 2.91818 3.02677 3.49200 3.74169 4.12060 4.38419 4.51761 4.79062 4.99804 5.25538 5.37215 5.89741 6.26530 6.64855 6.95354 7.06023 7.16529 7.72969 8.53408 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.037435 B = 0.008939 C = 0.007548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.788915 B = 3131.706625 C = 3708.620442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C 0.285 3.715 3 C 0.218 3.782 4 N -0.415 5.415 5 C -0.333 4.333 6 H 0.097 0.903 7 C 0.004 3.996 8 N -0.888 5.888 9 Si 1.003 2.997 10 H -0.279 1.279 11 H -0.274 1.274 12 H -0.255 1.255 13 C 0.499 3.501 14 O -0.609 6.609 15 C -0.027 4.027 16 N -0.455 5.455 17 C 0.010 3.990 18 C -0.264 4.264 19 S 0.238 5.762 20 H 0.132 0.868 21 H 0.134 0.866 22 H 0.280 0.720 23 H 0.201 0.799 24 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.926 10.841 0.092 11.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.032 4.032 3 C 0.092 3.908 4 N -0.133 5.133 5 C -0.461 4.461 6 H 0.114 0.886 7 C -0.199 4.199 8 N -0.526 5.526 9 Si 0.825 3.175 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.179 1.179 13 C 0.287 3.713 14 O -0.496 6.496 15 C -0.299 4.299 16 N -0.174 5.174 17 C -0.145 4.145 18 C -0.405 4.405 19 S 0.492 5.508 20 H 0.149 0.851 21 H 0.151 0.849 22 H 0.091 0.909 23 H 0.218 0.782 24 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.634 10.196 1.013 10.580 hybrid contribution -0.092 -0.513 -0.771 0.931 sum 2.541 9.683 0.243 10.014 Atomic orbital electron populations 1.80826 1.14604 1.14842 1.10177 1.29343 0.95363 0.87615 0.90906 1.19414 0.80790 1.02240 0.88339 1.43571 1.52644 1.09283 1.07753 1.19923 1.27106 0.82541 1.16578 0.88565 1.26250 0.94644 1.04250 0.94786 1.69870 1.27705 1.36885 1.18139 0.84833 0.79205 0.75590 0.77826 1.20473 1.19903 1.17948 1.17128 0.85656 0.84190 0.84336 1.90650 1.55401 1.77048 1.26497 1.27575 1.07781 0.99496 0.95095 1.67135 1.12853 1.12173 1.25259 1.22247 1.03274 0.88825 1.00150 1.27189 1.07579 1.07555 0.98147 1.83743 1.53245 0.96634 1.17192 0.85061 0.84916 0.90905 0.78225 0.76113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -26.70 18.54 20.01 0.37 -26.33 14 2 C 0.28 13.71 12.55 89.44 1.12 14.83 14 3 C 0.22 9.66 4.75 84.58 0.40 10.06 14 4 N -0.42 -20.82 2.60 -649.56 -1.69 -22.51 14 5 C -0.33 -17.49 9.30 84.13 0.78 -16.71 14 6 H 0.10 5.23 7.40 -2.91 -0.02 5.21 14 7 C 0.00 0.19 5.25 84.97 0.45 0.64 14 8 N -0.89 -44.26 8.88 21.69 0.19 -44.07 14 9 Si 1.00 39.63 29.55 68.60 2.03 41.66 14 10 H -0.28 -11.39 7.11 99.48 0.71 -10.68 14 11 H -0.27 -10.44 7.11 99.48 0.71 -9.74 14 12 H -0.26 -9.49 7.11 99.48 0.71 -8.78 14 13 C 0.50 24.64 7.53 86.56 0.65 25.29 14 14 O -0.61 -33.37 16.66 -4.30 -0.07 -33.44 14 15 C -0.03 -1.08 7.12 87.19 0.62 -0.46 14 16 N -0.45 -16.24 6.18 -190.42 -1.18 -17.42 14 17 C 0.01 0.27 11.24 83.94 0.94 1.22 14 18 C -0.26 -5.69 11.09 66.91 0.74 -4.95 14 19 S 0.24 6.91 23.04 -56.49 -1.30 5.61 14 20 H 0.13 5.11 5.54 -2.39 -0.01 5.09 14 21 H 0.13 5.94 6.08 -2.39 -0.01 5.92 14 22 H 0.28 13.36 8.31 -92.71 -0.77 12.59 14 23 H 0.20 3.88 8.06 -2.91 -0.02 3.86 14 24 H 0.22 2.66 8.06 -2.91 -0.02 2.64 14 Total: -1.00 -65.77 239.04 5.32 -60.45 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.25 Total: 6.10 kcal Atomic # 6 Polarization: 24.22 SS G_CDS: 5.71 Total: 29.93 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -2.30 Total: -110.32 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.07 Total: -33.44 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: 6.91 SS G_CDS: -1.30 Total: 5.61 kcal Total: -65.77 5.32 -60.45 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320978886.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.968 kcal (2) G-P(sol) polarization free energy of solvation -65.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds