Wall clock time and date at job start Sun Mar 29 2020 22:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.35187 * 123.13521 * 284.29266 * 3 2 1 5 5 S 1.70941 * 108.83859 * 179.97438 * 4 3 2 6 6 C 1.70778 * 91.12585 * 0.28348 * 5 4 3 7 7 C 1.50703 * 124.72381 * 179.87443 * 6 5 4 8 8 N 1.46504 * 109.46623 * 269.95349 * 7 6 5 9 9 C 1.34778 * 119.99729 * 180.02562 * 8 7 6 10 10 O 1.21688 * 119.99905 * 0.02562 * 9 8 7 11 11 C 1.46379 * 119.99972 * 180.02562 * 9 8 7 12 12 H 1.08001 * 119.99679 * 353.94066 * 11 9 8 13 13 C 1.40045 * 120.00161 * 173.93996 * 11 9 8 14 14 N 1.30676 * 119.99736 * 6.15168 * 13 11 9 15 15 Si 1.86791 * 120.00161 * 186.15222 * 13 11 9 16 16 H 1.48495 * 109.47470 * 94.98273 * 15 13 11 17 17 H 1.48505 * 109.47113 * 214.98616 * 15 13 11 18 18 H 1.48505 * 109.46936 * 334.98168 * 15 13 11 19 19 N 1.28709 * 110.54624 * 359.83334 * 6 5 4 20 20 H 1.07991 * 125.58035 * 0.03085 * 4 3 2 21 21 H 1.08998 * 109.47590 * 29.95663 * 7 6 5 22 22 H 1.08998 * 109.46923 * 149.95732 * 7 6 5 23 23 H 0.96995 * 120.00177 * 0.02562 * 8 7 6 24 24 H 0.97000 * 119.99924 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3070 -0.2785 1.0970 5 16 4.9634 -0.1742 0.6878 6 6 4.5741 0.2440 -0.9216 7 6 5.5845 0.5265 -2.0035 8 7 5.9096 1.9550 -2.0070 9 6 6.7972 2.4419 -2.8968 10 8 7.3281 1.6950 -3.6975 11 6 7.1225 3.8691 -2.8999 12 1 6.5813 4.5477 -2.2573 13 6 8.1355 4.3545 -3.7362 14 7 8.7079 3.5578 -4.5995 15 14 8.6686 6.1408 -3.6176 16 1 9.8465 6.2474 -2.7198 17 1 9.0292 6.6405 -4.9688 18 1 7.5536 6.9548 -3.0702 19 7 3.2977 0.2836 -1.0819 20 1 2.9151 -0.5275 2.0720 21 1 6.4892 -0.0516 -1.8158 22 1 5.1684 0.2462 -2.9712 23 1 5.4861 2.5503 -1.3690 24 1 9.4098 3.8939 -5.1785 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334792060.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:20 Heat of formation + Delta-G solvation = 36.719077 kcal Electronic energy + Delta-G solvation = -13249.076995 eV Core-core repulsion = 10675.731723 eV Total energy + Delta-G solvation = -2573.345271 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.19710 -37.41646 -36.51371 -33.79072 -32.43233 -30.84999 -27.79347 -26.10811 -24.85148 -21.04382 -19.83580 -19.33173 -17.43266 -17.20216 -15.52736 -15.37977 -14.98934 -14.37223 -14.07904 -13.74131 -13.37216 -13.02588 -13.00452 -12.75098 -12.18660 -11.85331 -11.55069 -11.22053 -10.98260 -10.53492 -10.27664 -9.93596 -9.87385 -9.12519 -8.90467 -7.72476 -7.70989 -6.26404 -4.70821 0.25658 1.03301 1.43024 1.78291 2.38442 3.11445 3.19197 3.22670 3.31887 3.51714 4.06620 4.34977 4.50795 4.82872 4.91230 4.92865 5.45984 5.66461 6.03465 6.17243 7.18265 7.38146 7.38575 7.75484 7.90591 8.24016 8.96222 9.37319 10.50023 10.68050 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.040187 B = 0.005096 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.579115 B = 5493.160118 C = 5660.239106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.295 3.705 3 C 0.121 3.879 4 C -0.252 4.252 5 S 0.258 5.742 6 C 0.037 3.963 7 C 0.205 3.795 8 N -0.761 5.761 9 C 0.557 3.443 10 O -0.577 6.577 11 C -0.543 4.543 12 H 0.070 0.930 13 C 0.088 3.912 14 N -0.766 5.766 15 Si 0.909 3.091 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 N -0.430 5.430 20 H 0.188 0.812 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.383 0.617 24 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 -5.864 12.459 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.024 4.024 3 C -0.016 4.016 4 C -0.397 4.397 5 S 0.516 5.484 6 C -0.243 4.243 7 C 0.077 3.923 8 N -0.420 5.420 9 C 0.362 3.638 10 O -0.460 6.460 11 C -0.580 4.580 12 H 0.088 0.912 13 C -0.132 4.132 14 N -0.394 5.394 15 Si 0.734 3.266 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.189 1.189 19 N -0.144 5.144 20 H 0.206 0.794 21 H 0.096 0.904 22 H 0.103 0.897 23 H 0.215 0.785 24 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.214 -6.465 11.675 14.328 hybrid contribution -0.665 1.149 0.375 1.380 sum -5.879 -5.316 12.051 14.424 Atomic orbital electron populations 1.81249 1.11204 1.08424 1.06856 1.24225 0.90754 0.93663 0.93761 1.15668 0.87688 1.08547 0.89661 1.26607 0.99557 1.09143 1.04428 1.83151 1.01617 1.58130 1.05510 1.27552 0.93983 1.02806 0.99926 1.19505 0.92080 0.87408 0.93292 1.46249 1.49691 1.04952 1.41059 1.18259 0.77233 0.89360 0.78994 1.90617 1.54502 1.60169 1.40687 1.20847 1.20465 0.91340 1.25312 0.91219 1.25700 0.95167 0.98931 0.93404 1.70018 1.18876 1.35714 1.14815 0.86334 0.79440 0.82712 0.78155 1.19739 1.20409 1.18854 1.66961 1.04336 1.15049 1.28086 0.79425 0.90353 0.89681 0.78516 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.93 18.54 41.84 0.78 -5.16 14 2 C 0.29 3.95 15.74 -22.48 -0.35 3.59 14 3 C 0.12 1.51 6.55 -86.29 -0.57 0.94 14 4 C -0.25 -2.27 10.89 29.65 0.32 -1.95 14 5 S 0.26 2.44 22.92 -107.50 -2.46 -0.02 14 6 C 0.04 0.52 6.71 -13.59 -0.09 0.42 14 7 C 0.21 3.56 6.24 -5.19 -0.03 3.52 14 8 N -0.76 -15.85 5.54 -62.90 -0.35 -16.20 14 9 C 0.56 15.04 7.74 -12.98 -0.10 14.94 14 10 O -0.58 -17.80 15.05 5.20 0.08 -17.72 14 11 C -0.54 -14.74 9.53 -35.63 -0.34 -15.08 14 12 H 0.07 1.74 7.85 -52.49 -0.41 1.32 14 13 C 0.09 2.38 5.49 -17.37 -0.10 2.28 14 14 N -0.77 -22.24 11.85 55.55 0.66 -21.58 14 15 Si 0.91 19.51 29.56 -169.99 -5.03 14.48 14 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 14 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 14 18 H -0.26 -5.51 7.11 56.52 0.40 -5.11 14 19 N -0.43 -6.40 10.67 -9.65 -0.10 -6.51 14 20 H 0.19 1.05 8.06 -52.49 -0.42 0.63 14 21 H 0.08 1.30 8.14 -51.93 -0.42 0.88 14 22 H 0.09 1.61 8.14 -51.93 -0.42 1.19 14 23 H 0.38 7.13 8.44 -40.82 -0.34 6.78 14 24 H 0.27 7.09 8.29 -40.82 -0.34 6.75 14 LS Contribution 253.29 15.07 3.82 3.82 Total: -1.00 -33.50 253.29 -5.03 -38.53 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -1.16 Total: 1.67 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -1.26 Total: 8.68 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.98 Total: -49.44 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.08 Total: -17.72 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.46 Total: -0.02 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.50 -5.03 -38.53 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334792060.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.245 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds