Wall clock time and date at job start Sun Mar 29 2020 22:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.35187 * 123.13521 * 284.29266 * 3 2 1 5 5 S 1.70941 * 108.83859 * 179.97438 * 4 3 2 6 6 C 1.70778 * 91.12585 * 0.28348 * 5 4 3 7 7 C 1.50703 * 124.72381 * 179.87443 * 6 5 4 8 8 N 1.46504 * 109.46623 * 269.95349 * 7 6 5 9 9 C 1.34778 * 119.99729 * 180.02562 * 8 7 6 10 10 O 1.21688 * 119.99905 * 0.02562 * 9 8 7 11 11 C 1.46379 * 119.99972 * 180.02562 * 9 8 7 12 12 H 1.08001 * 119.99679 * 353.94066 * 11 9 8 13 13 C 1.40045 * 120.00161 * 173.93996 * 11 9 8 14 14 N 1.30676 * 119.99736 * 6.15168 * 13 11 9 15 15 Si 1.86791 * 120.00161 * 186.15222 * 13 11 9 16 16 H 1.48495 * 109.47470 * 94.98273 * 15 13 11 17 17 H 1.48505 * 109.47113 * 214.98616 * 15 13 11 18 18 H 1.48505 * 109.46936 * 334.98168 * 15 13 11 19 19 N 1.28709 * 110.54624 * 359.83334 * 6 5 4 20 20 H 1.07991 * 125.58035 * 0.03085 * 4 3 2 21 21 H 1.08998 * 109.47590 * 29.95663 * 7 6 5 22 22 H 1.08998 * 109.46923 * 149.95732 * 7 6 5 23 23 H 0.96995 * 120.00177 * 0.02562 * 8 7 6 24 24 H 0.97000 * 119.99924 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3070 -0.2785 1.0970 5 16 4.9634 -0.1742 0.6878 6 6 4.5741 0.2440 -0.9216 7 6 5.5845 0.5265 -2.0035 8 7 5.9096 1.9550 -2.0070 9 6 6.7972 2.4419 -2.8968 10 8 7.3281 1.6950 -3.6975 11 6 7.1225 3.8691 -2.8999 12 1 6.5813 4.5477 -2.2573 13 6 8.1355 4.3545 -3.7362 14 7 8.7079 3.5578 -4.5995 15 14 8.6686 6.1408 -3.6176 16 1 9.8465 6.2474 -2.7198 17 1 9.0292 6.6405 -4.9688 18 1 7.5536 6.9548 -3.0702 19 7 3.2977 0.2836 -1.0819 20 1 2.9151 -0.5275 2.0720 21 1 6.4892 -0.0516 -1.8158 22 1 5.1684 0.2462 -2.9712 23 1 5.4861 2.5503 -1.3690 24 1 9.4098 3.8939 -5.1785 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334792060.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:19 Heat of formation + Delta-G solvation = 10.474119 kcal Electronic energy + Delta-G solvation = -13250.215062 eV Core-core repulsion = 10675.731723 eV Total energy + Delta-G solvation = -2574.483338 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.031 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.19856 -39.33496 -37.62036 -35.48737 -34.46445 -32.10176 -29.33963 -27.66030 -26.11648 -22.32805 -21.63706 -20.31367 -19.25626 -18.13202 -17.46734 -16.73459 -16.22538 -15.75599 -15.70521 -15.12455 -14.50229 -14.40705 -14.23631 -14.11496 -13.67997 -13.28728 -13.07121 -12.70829 -12.70262 -12.57479 -11.98725 -10.92328 -10.89592 -10.77500 -10.12688 -9.76158 -9.55020 -8.27896 -6.82721 -0.61473 0.16444 0.53136 0.73335 1.35433 1.44712 1.44976 1.60998 2.26513 2.32929 2.48946 2.55431 3.14029 3.38440 3.62798 3.97779 4.14465 4.41427 4.68421 4.73659 5.36016 5.87663 6.11631 6.17946 6.25704 6.43789 6.89852 7.49230 8.48124 8.68071 Molecular weight = 237.03amu Principal moments of inertia in cm(-1) A = 0.040187 B = 0.005096 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.579115 B = 5493.160118 C = 5660.239106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.311 3.689 3 C 0.089 3.911 4 C -0.215 4.215 5 S 0.357 5.643 6 C -0.006 4.006 7 C 0.210 3.790 8 N -0.749 5.749 9 C 0.543 3.457 10 O -0.627 6.627 11 C -0.571 4.571 12 H 0.087 0.913 13 C 0.032 3.968 14 N -0.819 5.819 15 Si 0.996 3.004 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.251 1.251 19 N -0.459 5.459 20 H 0.232 0.768 21 H 0.084 0.916 22 H 0.057 0.943 23 H 0.395 0.605 24 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 -5.163 15.242 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.007 4.007 3 C -0.047 4.047 4 C -0.361 4.361 5 S 0.614 5.386 6 C -0.284 4.284 7 C 0.083 3.917 8 N -0.405 5.405 9 C 0.348 3.652 10 O -0.514 6.514 11 C -0.608 4.608 12 H 0.106 0.894 13 C -0.184 4.184 14 N -0.449 5.449 15 Si 0.816 3.184 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.174 1.174 19 N -0.175 5.175 20 H 0.248 0.752 21 H 0.102 0.898 22 H 0.075 0.925 23 H 0.229 0.771 24 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.129 -5.773 14.499 16.427 hybrid contribution -0.727 0.819 -0.364 1.154 sum -5.856 -4.954 14.135 16.082 Atomic orbital electron populations 1.81260 1.12127 1.10014 1.07871 1.24371 0.90908 0.92557 0.92828 1.15604 0.87133 1.11662 0.90333 1.27185 0.99346 1.04507 1.05017 1.82865 1.00447 1.54931 1.00345 1.26790 0.93180 1.06384 1.02030 1.19323 0.93346 0.85049 0.94017 1.45812 1.48038 1.06976 1.39688 1.18539 0.77763 0.89662 0.79265 1.90572 1.56636 1.61327 1.42841 1.21396 1.21294 0.92076 1.26037 0.89445 1.26913 0.94682 1.04451 0.92318 1.70175 1.19852 1.38731 1.16104 0.85029 0.79407 0.75603 0.78407 1.18469 1.20015 1.17445 1.66811 1.05217 1.15233 1.30269 0.75162 0.89849 0.92465 0.77114 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.64 18.54 19.00 0.35 -12.28 14 2 C 0.31 7.97 15.74 88.33 1.39 9.36 14 3 C 0.09 2.02 6.55 39.42 0.26 2.28 14 4 C -0.22 -2.95 10.89 67.12 0.73 -2.22 14 5 S 0.36 5.43 22.92 -56.49 -1.29 4.14 14 6 C -0.01 -0.15 6.71 88.57 0.59 0.44 14 7 C 0.21 7.44 6.24 85.63 0.53 7.98 14 8 N -0.75 -31.62 5.54 -471.13 -2.61 -34.23 14 9 C 0.54 30.16 7.74 86.36 0.67 30.82 14 10 O -0.63 -40.31 15.05 -4.31 -0.06 -40.38 14 11 C -0.57 -31.28 9.53 24.83 0.24 -31.04 14 12 H 0.09 4.30 7.85 -2.91 -0.02 4.27 14 13 C 0.03 1.73 5.49 85.30 0.47 2.19 14 14 N -0.82 -48.79 11.85 21.84 0.26 -48.53 14 15 Si 1.00 39.70 29.56 68.60 2.03 41.73 14 16 H -0.26 -9.80 7.11 99.48 0.71 -9.09 14 17 H -0.28 -10.70 7.11 99.48 0.71 -9.99 14 18 H -0.25 -9.36 7.11 99.48 0.71 -8.65 14 19 N -0.46 -13.37 10.67 -184.44 -1.97 -15.34 14 20 H 0.23 1.14 8.06 -2.92 -0.02 1.11 14 21 H 0.08 2.83 8.14 -2.39 -0.02 2.81 14 22 H 0.06 2.31 8.14 -2.39 -0.02 2.29 14 23 H 0.40 14.58 8.44 -92.71 -0.78 13.80 14 24 H 0.28 14.82 8.29 -92.71 -0.77 14.05 14 Total: -1.00 -76.55 253.29 2.07 -74.48 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.48 Total: 10.60 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 4.88 Total: 19.82 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.97 Total: -110.38 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.06 Total: -40.38 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.29 Total: 4.14 kcal Total: -76.55 2.07 -74.48 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334792060.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.954 kcal (2) G-P(sol) polarization free energy of solvation -76.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds