Wall clock time and date at job start Sun Mar 29 2020 21:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47345 * 2 1 4 4 N 1.46897 * 109.47305 * 120.00489 * 2 1 3 5 5 C 1.46901 * 111.00097 * 275.00075 * 4 2 1 6 6 C 1.52996 * 109.47298 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.46780 * 305.00106 * 6 5 4 8 8 C 1.47206 * 109.46984 * 64.99421 * 6 5 4 9 9 N 4.90936 * 135.91417 * 112.23568 * 2 1 3 10 10 C 1.52988 * 109.47378 * 184.99656 * 6 5 4 11 11 C 1.50697 * 109.47701 * 174.99865 * 10 6 5 12 12 H 1.08001 * 119.99403 * 0.02562 * 11 10 6 13 13 C 1.37876 * 120.00708 * 180.02562 * 11 10 6 14 14 N 1.31512 * 120.00225 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99650 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47154 * 89.99770 * 15 13 11 17 17 H 1.48494 * 109.46982 * 209.99834 * 15 13 11 18 18 H 1.48501 * 109.46687 * 329.99801 * 15 13 11 19 19 C 1.53001 * 109.46869 * 240.00505 * 2 1 3 20 20 C 1.53006 * 115.54939 * 205.58605 * 19 2 1 21 21 C 1.52994 * 117.52001 * 351.28265 * 19 2 1 22 22 C 1.53001 * 60.00268 * 107.48359 * 21 19 2 23 23 H 1.08999 * 109.47295 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46814 * 299.99606 * 1 2 3 25 25 H 1.09004 * 109.46836 * 59.99643 * 1 2 3 26 26 H 1.00906 * 110.99773 * 38.94875 * 4 2 1 27 27 H 1.08999 * 109.46642 * 299.99399 * 5 4 2 28 28 H 1.08997 * 109.46744 * 59.99564 * 5 4 2 29 29 H 1.09004 * 109.47654 * 295.00455 * 10 6 5 30 30 H 1.09008 * 109.47341 * 54.99999 * 10 6 5 31 31 H 0.96999 * 119.99907 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.47002 * 299.90901 * 20 19 2 33 33 H 1.08993 * 109.46955 * 59.91338 * 20 19 2 34 34 H 1.09000 * 109.47050 * 179.91167 * 20 19 2 35 35 H 1.09004 * 117.50458 * 214.97189 * 21 19 2 36 36 H 1.09006 * 117.50100 * 359.97438 * 21 19 2 37 37 H 1.09002 * 117.49725 * 252.51699 * 22 21 19 38 38 H 1.08998 * 117.51582 * 107.48384 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2224 2.3469 6 6 2.5951 -0.5334 3.5744 7 1 1.9692 -1.4084 3.7498 8 6 3.9839 -0.9625 3.3418 9 7 5.0564 -1.2925 3.1616 10 6 2.5429 0.3846 4.7971 11 6 2.9307 -0.3946 6.0274 12 1 3.1890 -1.4401 5.9451 13 6 2.9558 0.2269 7.2578 14 7 3.2947 -0.4530 8.3313 15 14 2.5083 2.0350 7.4000 16 1 1.0488 2.1663 7.6407 17 1 3.2532 2.6417 8.5323 18 1 2.8671 2.7343 6.1400 19 6 2.0400 -0.7212 -1.2493 20 6 3.4338 -1.3411 -1.1307 21 6 1.0111 -1.4559 -2.1109 22 6 1.6340 -0.1505 -2.6097 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.4495 -1.4980 1.4099 27 1 2.7590 1.0459 2.1182 28 1 1.0871 0.6161 2.5525 29 1 3.2365 1.2140 4.6588 30 1 1.5315 0.7730 4.9170 31 1 3.3119 -0.0158 9.1969 32 1 4.1613 -0.5598 -0.9104 33 1 3.4367 -2.0774 -0.3272 34 1 3.6962 -1.8275 -2.0702 35 1 1.3271 -2.3809 -2.5933 36 1 -0.0295 -1.4261 -1.7876 37 1 1.0033 0.7385 -2.6145 38 1 2.3600 -0.2163 -3.4200 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335365979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:47 Heat of formation + Delta-G solvation = 35.262307 kcal Electronic energy + Delta-G solvation = -16533.539077 eV Core-core repulsion = 13990.302959 eV Total energy + Delta-G solvation = -2543.236118 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.25487 -37.04106 -34.94594 -33.48650 -31.86878 -29.55747 -28.54681 -26.44669 -23.68108 -22.81709 -22.05219 -21.43699 -18.77601 -16.95672 -16.84522 -16.02887 -15.25735 -14.64202 -14.31806 -14.14306 -13.61198 -13.33059 -12.97909 -12.89408 -12.47138 -12.37822 -12.19940 -12.07206 -11.79683 -11.65044 -11.45179 -11.30283 -11.18944 -10.94606 -10.75408 -10.41066 -10.31673 -9.91453 -9.70774 -9.62431 -9.32058 -8.61891 -8.30050 -6.10650 -4.11236 3.25344 3.34565 3.35485 3.63687 3.73502 3.80952 4.16581 4.38179 4.63605 4.78296 4.81811 4.87665 5.00911 5.16382 5.23848 5.24364 5.45356 5.52527 5.56704 5.60579 5.70859 5.79961 5.87267 5.90949 6.00401 6.02272 6.10446 6.19374 6.25326 6.31085 6.49332 6.92121 7.09222 7.13425 7.48130 7.64057 8.40846 8.57406 8.93202 9.49289 11.02516 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.005169 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.946201 B = 5415.245852 C = 5837.904595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.121 3.879 3 H 0.080 0.920 4 N -0.682 5.682 5 C 0.064 3.936 6 C 0.020 3.980 7 H 0.104 0.896 8 C 0.253 3.747 9 N -0.471 5.471 10 C -0.005 4.005 11 C -0.528 4.528 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.877 3.123 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.107 4.107 20 C -0.098 4.098 21 C -0.184 4.184 22 C -0.180 4.180 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.343 0.657 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.025 0.975 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.236 2.191 -18.960 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.011 3.989 3 H 0.098 0.902 4 N -0.313 5.313 5 C -0.066 4.066 6 C -0.002 4.002 7 H 0.122 0.878 8 C -0.065 4.065 9 N -0.148 5.148 10 C -0.044 4.044 11 C -0.566 4.566 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.704 3.296 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.108 4.108 20 C -0.155 4.155 21 C -0.221 4.221 22 C -0.217 4.217 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.162 0.838 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.910 1.782 -19.183 20.152 hybrid contribution -1.627 1.146 0.572 2.071 sum -7.537 2.928 -18.612 20.292 Atomic orbital electron populations 1.22626 0.97340 1.02287 1.02138 1.20937 0.91905 0.97216 0.88880 0.90173 1.60512 1.57448 1.09807 1.03505 1.22122 1.00132 0.95341 0.89002 1.18939 0.85021 1.00498 0.95738 0.87846 1.28708 0.94604 0.92356 0.90790 1.81017 1.12660 1.09933 1.11148 1.19630 0.97808 0.95069 0.91887 1.21035 1.46942 0.98474 0.90104 0.90781 1.24989 0.94445 0.97937 0.95723 1.69905 1.47985 1.36666 0.98970 0.86820 0.78793 0.85798 0.78169 1.20082 1.21304 1.18865 1.21533 0.96478 1.02172 0.90629 1.21080 0.93055 1.00591 1.00786 1.23215 0.98798 0.95812 1.04287 1.23029 1.03797 0.97384 0.97505 0.91907 0.92287 0.92236 0.83817 0.90564 0.93389 0.95681 0.95017 0.92571 0.92536 0.91022 0.93993 0.89294 0.88462 0.89155 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.61 7.76 37.16 0.29 -1.32 16 2 C 0.12 1.25 2.85 -67.71 -0.19 1.06 16 3 H 0.08 0.88 7.80 -51.93 -0.41 0.47 16 4 N -0.68 -8.19 4.85 -106.73 -0.52 -8.71 16 5 C 0.06 0.86 4.85 -3.83 -0.02 0.84 16 6 C 0.02 0.35 2.35 -93.41 -0.22 0.13 16 7 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 8 C 0.25 5.19 13.67 -20.74 -0.28 4.91 16 9 N -0.47 -10.68 18.54 42.17 0.78 -9.90 16 10 C 0.00 -0.11 3.49 -27.89 -0.10 -0.20 16 11 C -0.53 -14.19 9.15 -34.44 -0.32 -14.51 16 12 H 0.07 2.19 7.84 -52.49 -0.41 1.78 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 15 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 19 C -0.11 -1.10 2.57 -154.51 -0.40 -1.49 16 20 C -0.10 -1.14 9.17 37.16 0.34 -0.80 16 21 C -0.18 -1.64 9.28 -26.73 -0.25 -1.89 16 22 C -0.18 -1.59 9.61 -26.73 -0.26 -1.85 16 23 H 0.06 0.53 6.96 -51.93 -0.36 0.17 16 24 H 0.06 0.52 7.45 -51.93 -0.39 0.14 16 25 H 0.06 0.47 7.07 -51.93 -0.37 0.11 16 26 H 0.34 3.83 8.47 -39.29 -0.33 3.50 16 27 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 28 H 0.05 0.57 7.43 -51.93 -0.39 0.18 16 29 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 30 H 0.03 0.62 7.57 -51.92 -0.39 0.23 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.93 7.65 -51.93 -0.40 0.54 16 34 H 0.04 0.44 8.11 -51.93 -0.42 0.01 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.10 0.80 5.85 -51.93 -0.30 0.49 16 37 H 0.09 0.74 7.60 -51.93 -0.39 0.34 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -30.49 311.72 -6.64 -37.13 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.21 Total: 0.37 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.50 Total: -13.22 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 1.04 Total: -44.92 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.49 -6.64 -37.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335365979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.390 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds