Wall clock time and date at job start Sun Mar 29 2020 21:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47345 * 2 1 4 4 N 1.46897 * 109.47305 * 120.00489 * 2 1 3 5 5 C 1.46901 * 111.00097 * 275.00075 * 4 2 1 6 6 C 1.52996 * 109.47298 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.46780 * 305.00106 * 6 5 4 8 8 C 1.47206 * 109.46984 * 64.99421 * 6 5 4 9 9 N 4.90936 * 135.91417 * 112.23568 * 2 1 3 10 10 C 1.52988 * 109.47378 * 184.99656 * 6 5 4 11 11 C 1.50697 * 109.47701 * 174.99865 * 10 6 5 12 12 H 1.08001 * 119.99403 * 0.02562 * 11 10 6 13 13 C 1.37876 * 120.00708 * 180.02562 * 11 10 6 14 14 N 1.31512 * 120.00225 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99650 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47154 * 89.99770 * 15 13 11 17 17 H 1.48494 * 109.46982 * 209.99834 * 15 13 11 18 18 H 1.48501 * 109.46687 * 329.99801 * 15 13 11 19 19 C 1.53001 * 109.46869 * 240.00505 * 2 1 3 20 20 C 1.53006 * 115.54939 * 205.58605 * 19 2 1 21 21 C 1.52994 * 117.52001 * 351.28265 * 19 2 1 22 22 C 1.53001 * 60.00268 * 107.48359 * 21 19 2 23 23 H 1.08999 * 109.47295 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46814 * 299.99606 * 1 2 3 25 25 H 1.09004 * 109.46836 * 59.99643 * 1 2 3 26 26 H 1.00906 * 110.99773 * 38.94875 * 4 2 1 27 27 H 1.08999 * 109.46642 * 299.99399 * 5 4 2 28 28 H 1.08997 * 109.46744 * 59.99564 * 5 4 2 29 29 H 1.09004 * 109.47654 * 295.00455 * 10 6 5 30 30 H 1.09008 * 109.47341 * 54.99999 * 10 6 5 31 31 H 0.96999 * 119.99907 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.47002 * 299.90901 * 20 19 2 33 33 H 1.08993 * 109.46955 * 59.91338 * 20 19 2 34 34 H 1.09000 * 109.47050 * 179.91167 * 20 19 2 35 35 H 1.09004 * 117.50458 * 214.97189 * 21 19 2 36 36 H 1.09006 * 117.50100 * 359.97438 * 21 19 2 37 37 H 1.09002 * 117.49725 * 252.51699 * 22 21 19 38 38 H 1.08998 * 117.51582 * 107.48384 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0825 0.2224 2.3469 6 6 2.5951 -0.5334 3.5744 7 1 1.9692 -1.4084 3.7498 8 6 3.9839 -0.9625 3.3418 9 7 5.0564 -1.2925 3.1616 10 6 2.5429 0.3846 4.7971 11 6 2.9307 -0.3946 6.0274 12 1 3.1890 -1.4401 5.9451 13 6 2.9558 0.2269 7.2578 14 7 3.2947 -0.4530 8.3313 15 14 2.5083 2.0350 7.4000 16 1 1.0488 2.1663 7.6407 17 1 3.2532 2.6417 8.5323 18 1 2.8671 2.7343 6.1400 19 6 2.0400 -0.7212 -1.2493 20 6 3.4338 -1.3411 -1.1307 21 6 1.0111 -1.4559 -2.1109 22 6 1.6340 -0.1505 -2.6097 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.4495 -1.4980 1.4099 27 1 2.7590 1.0459 2.1182 28 1 1.0871 0.6161 2.5525 29 1 3.2365 1.2140 4.6588 30 1 1.5315 0.7730 4.9170 31 1 3.3119 -0.0158 9.1969 32 1 4.1613 -0.5598 -0.9104 33 1 3.4367 -2.0774 -0.3272 34 1 3.6962 -1.8275 -2.0702 35 1 1.3271 -2.3809 -2.5933 36 1 -0.0295 -1.4261 -1.7876 37 1 1.0033 0.7385 -2.6145 38 1 2.3600 -0.2163 -3.4200 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335365979.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:47 Heat of formation + Delta-G solvation = 16.553084 kcal Electronic energy + Delta-G solvation = -16534.350370 eV Core-core repulsion = 13990.302959 eV Total energy + Delta-G solvation = -2544.047411 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.06965 -38.42462 -36.24591 -35.23893 -33.55677 -30.60318 -29.56644 -27.88785 -24.72435 -23.72821 -23.24802 -22.85465 -19.64180 -18.88460 -18.30558 -16.84576 -16.55466 -15.88726 -15.57175 -15.25724 -15.05472 -14.65401 -14.29585 -13.94016 -13.84407 -13.71426 -13.46310 -13.20332 -13.06135 -13.01618 -12.64448 -12.36849 -12.34619 -12.11464 -12.02055 -11.77578 -11.65506 -11.55159 -11.28514 -10.88341 -10.72260 -10.38852 -9.18918 -8.23949 -6.29489 1.42525 1.46113 1.56174 2.08707 2.16001 2.41687 2.89903 3.12430 3.25286 3.37354 3.89732 4.03664 4.11111 4.19562 4.27494 4.36054 4.48099 4.55781 4.70148 4.75762 4.82672 4.90314 4.97860 4.99971 5.05058 5.11109 5.18428 5.25083 5.31810 5.36357 5.44425 5.47134 5.54591 5.65009 6.18034 6.28795 6.60953 6.78389 6.94190 7.35096 8.93113 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.005169 C = 0.004795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.946201 B = 5415.245852 C = 5837.904595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 H 0.075 0.925 4 N -0.694 5.694 5 C 0.078 3.922 6 C 0.025 3.975 7 H 0.116 0.884 8 C 0.263 3.737 9 N -0.517 5.517 10 C -0.003 4.003 11 C -0.531 4.531 12 H 0.028 0.972 13 C 0.003 3.997 14 N -0.955 5.955 15 Si 0.949 3.051 16 H -0.256 1.256 17 H -0.296 1.296 18 H -0.238 1.238 19 C -0.124 4.124 20 C -0.093 4.093 21 C -0.177 4.177 22 C -0.172 4.172 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.348 0.652 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.063 0.937 31 H 0.264 0.736 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.494 4.122 -20.809 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.014 3.986 3 H 0.094 0.906 4 N -0.326 5.326 5 C -0.053 4.053 6 C 0.003 3.997 7 H 0.133 0.867 8 C -0.053 4.053 9 N -0.194 5.194 10 C -0.042 4.042 11 C -0.569 4.569 12 H 0.047 0.953 13 C -0.194 4.194 14 N -0.596 5.596 15 Si 0.772 3.228 16 H -0.181 1.181 17 H -0.223 1.223 18 H -0.162 1.162 19 C -0.124 4.124 20 C -0.151 4.151 21 C -0.213 4.213 22 C -0.209 4.209 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.168 0.832 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.183 3.708 -21.073 22.908 hybrid contribution -0.875 0.421 1.120 1.482 sum -9.058 4.128 -19.954 22.299 Atomic orbital electron populations 1.22554 0.95636 1.02743 1.02781 1.20929 0.93156 0.96638 0.87906 0.90650 1.60432 1.58459 1.10041 1.03621 1.21943 1.01123 0.94622 0.87563 1.19059 0.83414 1.00756 0.96430 0.86669 1.29458 0.95184 0.91223 0.89476 1.81011 1.14199 1.11438 1.12789 1.19579 0.99091 0.94870 0.90639 1.21414 1.45795 0.97120 0.92579 0.95326 1.26040 0.94566 1.03510 0.95241 1.70091 1.50495 1.39180 0.99786 0.85681 0.79283 0.79080 0.78781 1.18051 1.22251 1.16155 1.21483 0.95962 1.03511 0.91492 1.20989 0.93998 0.99660 1.00422 1.23263 0.98907 0.95869 1.03294 1.23092 1.03650 0.97827 0.96337 0.91527 0.92058 0.91171 0.83228 0.90856 0.90654 0.95668 0.91934 0.92678 0.94222 0.92928 0.93209 0.89314 0.87354 0.88015 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 7.76 71.98 0.56 -1.91 16 2 C 0.12 2.24 2.85 44.92 0.13 2.37 16 3 H 0.08 1.45 7.80 -2.39 -0.02 1.43 16 4 N -0.69 -15.24 4.85 -491.58 -2.38 -17.62 16 5 C 0.08 1.86 4.85 86.30 0.42 2.28 16 6 C 0.03 0.84 2.35 -12.60 -0.03 0.81 16 7 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 8 C 0.26 10.79 13.67 89.44 1.22 12.02 16 9 N -0.52 -23.88 18.54 20.01 0.37 -23.51 16 10 C 0.00 -0.11 3.49 29.84 0.10 -0.01 16 11 C -0.53 -28.72 9.15 25.60 0.23 -28.48 16 12 H 0.03 1.75 7.84 -2.91 -0.02 1.73 16 13 C 0.00 0.17 5.47 84.65 0.46 0.63 16 14 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 15 Si 0.95 41.48 27.47 68.60 1.88 43.36 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.30 -13.29 7.11 99.48 0.71 -12.59 16 18 H -0.24 -9.36 6.54 99.48 0.65 -8.71 16 19 C -0.12 -2.29 2.57 -52.18 -0.13 -2.42 16 20 C -0.09 -2.12 9.17 71.98 0.66 -1.46 16 21 C -0.18 -2.68 9.28 30.59 0.28 -2.39 16 22 C -0.17 -2.59 9.61 30.60 0.29 -2.29 16 23 H 0.07 0.88 6.96 -2.39 -0.02 0.87 16 24 H 0.06 0.84 7.45 -2.39 -0.02 0.82 16 25 H 0.07 0.84 7.07 -2.38 -0.02 0.82 16 26 H 0.35 7.01 8.47 -89.69 -0.76 6.25 16 27 H 0.07 1.83 8.05 -2.39 -0.02 1.82 16 28 H 0.08 1.44 7.43 -2.39 -0.02 1.43 16 29 H 0.02 1.02 7.20 -2.38 -0.02 1.01 16 30 H 0.06 2.19 7.57 -2.38 -0.02 2.18 16 31 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.37 7.65 -2.39 -0.02 1.35 16 34 H 0.05 1.01 8.11 -2.39 -0.02 0.99 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.41 5.85 -2.38 -0.01 1.40 16 37 H 0.10 1.32 7.60 -2.39 -0.02 1.30 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -67.97 311.72 4.60 -63.37 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.22 Total: 14.25 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 4.20 Total: -20.87 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -1.71 Total: -100.11 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.88 Total: 43.36 kcal Total: -67.97 4.60 -63.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335365979.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.926 kcal (2) G-P(sol) polarization free energy of solvation -67.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds