Wall clock time and date at job start Sun Mar 29 2020 21:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47418 * 2 1 4 4 N 1.46903 * 109.47298 * 119.99924 * 2 1 3 5 5 C 1.46907 * 110.99659 * 274.99943 * 4 2 1 6 6 C 1.52998 * 109.46996 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.46856 * 55.00063 * 6 5 4 8 8 C 1.47195 * 109.47259 * 294.99921 * 6 5 4 9 9 N 4.90935 * 82.27805 * 119.13191 * 2 1 3 10 10 C 1.53002 * 109.47100 * 174.99815 * 6 5 4 11 11 C 1.50698 * 109.47066 * 185.00278 * 10 6 5 12 12 H 1.07992 * 120.00429 * 0.02562 * 11 10 6 13 13 C 1.37880 * 119.99728 * 180.02562 * 11 10 6 14 14 N 1.31511 * 120.00209 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00009 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46886 * 90.00109 * 15 13 11 17 17 H 1.48497 * 109.47221 * 210.00165 * 15 13 11 18 18 H 1.48505 * 109.47000 * 330.00166 * 15 13 11 19 19 C 1.53004 * 109.47366 * 239.99587 * 2 1 3 20 20 C 1.52997 * 115.55181 * 205.58426 * 19 2 1 21 21 C 1.53003 * 117.51219 * 351.28550 * 19 2 1 22 22 C 1.52993 * 117.49560 * 59.91119 * 19 2 1 23 23 H 1.08997 * 109.46930 * 299.99873 * 1 2 3 24 24 H 1.08999 * 109.46950 * 60.00565 * 1 2 3 25 25 H 1.08995 * 109.46822 * 180.02562 * 1 2 3 26 26 H 1.00898 * 110.99885 * 38.94857 * 4 2 1 27 27 H 1.08998 * 109.46820 * 299.99881 * 5 4 2 28 28 H 1.08998 * 109.47197 * 59.99868 * 5 4 2 29 29 H 1.09004 * 109.47203 * 305.00411 * 10 6 5 30 30 H 1.09004 * 109.47114 * 65.00148 * 10 6 5 31 31 H 0.96998 * 120.00675 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.47153 * 299.91015 * 20 19 2 33 33 H 1.09001 * 109.46832 * 179.91206 * 20 19 2 34 34 H 1.09004 * 109.47261 * 59.91187 * 20 19 2 35 35 H 1.09000 * 117.49553 * 214.96932 * 21 19 2 36 36 H 1.09000 * 117.50386 * 359.97438 * 21 19 2 37 37 H 1.09001 * 117.50068 * 359.97438 * 22 19 2 38 38 H 1.09002 * 117.50103 * 144.98214 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5951 -0.5330 3.5745 7 1 3.5507 -1.0018 3.3397 8 6 1.6209 -1.5686 3.9553 9 7 0.8704 -2.3683 4.2494 10 6 2.7791 0.4459 4.7359 11 6 3.3990 -0.2736 5.9059 12 1 3.6383 -1.3238 5.8288 13 6 3.6607 0.4091 7.0750 14 7 3.3689 1.6879 7.1691 15 14 4.4285 -0.4830 8.5256 16 1 5.9081 -0.3942 8.4344 17 1 3.9719 0.1455 9.7911 18 1 4.0159 -1.9094 8.5042 19 6 2.0401 -0.7213 -1.2492 20 6 3.4339 -1.3411 -1.1305 21 6 1.0111 -1.4562 -2.1107 22 6 1.6341 -0.1509 -2.6095 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.4496 -1.4978 1.4101 27 1 2.7589 1.0463 2.1181 28 1 1.0871 0.6165 2.5525 29 1 3.4314 1.2616 4.4238 30 1 1.8093 0.8482 5.0291 31 1 3.5533 2.1683 7.9913 32 1 4.1614 -0.5599 -0.9103 33 1 3.6963 -1.8276 -2.0699 34 1 3.4369 -2.0774 -0.3267 35 1 1.3272 -2.3813 -2.5929 36 1 -0.0294 -1.4263 -1.7874 37 1 1.0033 0.7380 -2.6146 38 1 2.3601 -0.2168 -3.4199 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335365980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:49 Heat of formation + Delta-G solvation = 30.556581 kcal Electronic energy + Delta-G solvation = -16478.331350 eV Core-core repulsion = 13934.891176 eV Total energy + Delta-G solvation = -2543.440174 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21224 -37.05950 -34.92438 -33.54259 -31.76178 -29.38496 -28.40636 -26.10536 -23.65062 -22.79490 -22.02393 -21.77537 -18.64673 -16.77437 -16.52821 -15.95207 -15.23938 -14.80717 -14.52127 -14.12838 -13.34196 -12.99256 -12.91363 -12.82952 -12.76981 -12.22559 -12.10943 -12.03815 -11.71719 -11.57138 -11.34572 -11.22259 -11.00816 -10.91875 -10.72339 -10.56579 -10.26519 -10.19279 -9.60552 -9.51331 -9.21760 -8.45144 -8.25264 -6.09196 -4.12266 3.29726 3.36485 3.41107 3.58021 3.63510 3.69515 4.22418 4.42415 4.67787 4.81929 4.83361 4.91967 5.05142 5.23571 5.28150 5.29031 5.53149 5.58162 5.63389 5.66850 5.78011 5.84284 5.90137 6.03036 6.04453 6.12089 6.19030 6.22868 6.40107 6.49020 6.56374 7.17606 7.43890 7.49414 7.54153 7.85974 8.23751 8.41366 8.92404 9.53238 11.01727 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.042074 B = 0.004671 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.335564 B = 5992.396980 C = 6057.511910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.120 3.880 3 H 0.083 0.917 4 N -0.682 5.682 5 C 0.067 3.933 6 C 0.007 3.993 7 H 0.111 0.889 8 C 0.242 3.758 9 N -0.478 5.478 10 C 0.032 3.968 11 C -0.526 4.526 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.108 4.108 20 C -0.099 4.099 21 C -0.187 4.187 22 C -0.179 4.179 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.339 0.661 27 H 0.091 0.909 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.024 0.976 31 H 0.262 0.738 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 -1.192 -17.580 17.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.009 3.991 3 H 0.101 0.899 4 N -0.312 5.312 5 C -0.063 4.063 6 C -0.015 4.015 7 H 0.128 0.872 8 C -0.075 4.075 9 N -0.155 5.155 10 C -0.006 4.006 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.108 4.108 20 C -0.156 4.156 21 C -0.223 4.223 22 C -0.216 4.216 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.157 0.843 27 H 0.109 0.891 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.562 -2.170 -17.163 17.488 hybrid contribution -0.328 0.010 1.029 1.080 sum -2.891 -2.159 -16.134 16.532 Atomic orbital electron populations 1.22627 0.97572 1.02168 1.02122 1.20955 0.91833 0.97358 0.88906 0.89858 1.60611 1.57084 1.09812 1.03662 1.22114 1.00229 0.95294 0.88638 1.19329 0.93889 0.91933 0.96361 0.87151 1.29308 0.93325 0.93265 0.91580 1.81010 1.11999 1.12085 1.10379 1.19161 0.98224 0.93201 0.90037 1.21151 1.41262 0.96187 0.97827 0.92509 1.24949 0.95521 0.94825 0.98647 1.69934 1.47627 1.08123 1.27394 0.86596 0.79559 0.79977 0.81984 1.20421 1.21179 1.19880 1.21540 0.96515 1.02146 0.90618 1.21095 0.93066 1.00621 1.00794 1.23219 0.98879 0.95842 1.04394 1.23025 1.03769 0.97348 0.97458 0.92403 0.92137 0.92152 0.84297 0.89104 0.94793 0.94224 0.95806 0.92807 0.92228 0.94016 0.90996 0.89297 0.88570 0.89150 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 7.76 37.16 0.29 -1.67 16 2 C 0.12 1.34 2.85 -67.71 -0.19 1.14 16 3 H 0.08 0.94 7.80 -51.93 -0.40 0.53 16 4 N -0.68 -8.84 5.14 -106.72 -0.55 -9.39 16 5 C 0.07 0.98 4.92 -3.82 -0.02 0.96 16 6 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 7 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 8 C 0.24 4.89 12.97 -20.78 -0.27 4.62 16 9 N -0.48 -10.43 18.53 42.13 0.78 -9.65 16 10 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 11 C -0.53 -14.02 8.60 -34.44 -0.30 -14.32 16 12 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 15 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.11 -1.11 2.57 -154.51 -0.40 -1.51 16 20 C -0.10 -1.05 9.17 37.16 0.34 -0.71 16 21 C -0.19 -1.77 9.28 -26.73 -0.25 -2.02 16 22 C -0.18 -1.61 9.61 -26.74 -0.26 -1.87 16 23 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 24 H 0.06 0.56 7.07 -51.93 -0.37 0.19 16 25 H 0.06 0.64 6.96 -51.93 -0.36 0.28 16 26 H 0.34 4.68 7.55 -39.29 -0.30 4.38 16 27 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 28 H 0.03 0.50 7.43 -51.93 -0.39 0.12 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.40 8.11 -51.93 -0.42 -0.03 16 34 H 0.07 0.84 7.65 -51.93 -0.40 0.45 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.89 5.85 -51.93 -0.30 0.59 16 37 H 0.09 0.77 7.60 -51.93 -0.39 0.37 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 314.13 15.07 4.73 4.73 Total: -1.00 -28.66 314.13 -7.02 -35.69 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.21 Total: 0.34 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -1.50 Total: -13.21 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.97 Total: -43.87 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.66 -7.02 -35.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335365980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.243 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds