Wall clock time and date at job start Sun Mar 29 2020 21:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47418 * 2 1 4 4 N 1.46903 * 109.47298 * 119.99924 * 2 1 3 5 5 C 1.46907 * 110.99659 * 274.99943 * 4 2 1 6 6 C 1.52998 * 109.46996 * 179.97438 * 5 4 2 7 7 H 1.08999 * 109.46856 * 55.00063 * 6 5 4 8 8 C 1.47195 * 109.47259 * 294.99921 * 6 5 4 9 9 N 4.90935 * 82.27805 * 119.13191 * 2 1 3 10 10 C 1.53002 * 109.47100 * 174.99815 * 6 5 4 11 11 C 1.50698 * 109.47066 * 185.00278 * 10 6 5 12 12 H 1.07992 * 120.00429 * 0.02562 * 11 10 6 13 13 C 1.37880 * 119.99728 * 180.02562 * 11 10 6 14 14 N 1.31511 * 120.00209 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00009 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46886 * 90.00109 * 15 13 11 17 17 H 1.48497 * 109.47221 * 210.00165 * 15 13 11 18 18 H 1.48505 * 109.47000 * 330.00166 * 15 13 11 19 19 C 1.53004 * 109.47366 * 239.99587 * 2 1 3 20 20 C 1.52997 * 115.55181 * 205.58426 * 19 2 1 21 21 C 1.53003 * 117.51219 * 351.28550 * 19 2 1 22 22 C 1.52993 * 117.49560 * 59.91119 * 19 2 1 23 23 H 1.08997 * 109.46930 * 299.99873 * 1 2 3 24 24 H 1.08999 * 109.46950 * 60.00565 * 1 2 3 25 25 H 1.08995 * 109.46822 * 180.02562 * 1 2 3 26 26 H 1.00898 * 110.99885 * 38.94857 * 4 2 1 27 27 H 1.08998 * 109.46820 * 299.99881 * 5 4 2 28 28 H 1.08998 * 109.47197 * 59.99868 * 5 4 2 29 29 H 1.09004 * 109.47203 * 305.00411 * 10 6 5 30 30 H 1.09004 * 109.47114 * 65.00148 * 10 6 5 31 31 H 0.96998 * 120.00675 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.47153 * 299.91015 * 20 19 2 33 33 H 1.09001 * 109.46832 * 179.91206 * 20 19 2 34 34 H 1.09004 * 109.47261 * 59.91187 * 20 19 2 35 35 H 1.09000 * 117.49553 * 214.96932 * 21 19 2 36 36 H 1.09000 * 117.50386 * 359.97438 * 21 19 2 37 37 H 1.09001 * 117.50068 * 359.97438 * 22 19 2 38 38 H 1.09002 * 117.50103 * 144.98214 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5951 -0.5330 3.5745 7 1 3.5507 -1.0018 3.3397 8 6 1.6209 -1.5686 3.9553 9 7 0.8704 -2.3683 4.2494 10 6 2.7791 0.4459 4.7359 11 6 3.3990 -0.2736 5.9059 12 1 3.6383 -1.3238 5.8288 13 6 3.6607 0.4091 7.0750 14 7 3.3689 1.6879 7.1691 15 14 4.4285 -0.4830 8.5256 16 1 5.9081 -0.3942 8.4344 17 1 3.9719 0.1455 9.7911 18 1 4.0159 -1.9094 8.5042 19 6 2.0401 -0.7213 -1.2492 20 6 3.4339 -1.3411 -1.1305 21 6 1.0111 -1.4562 -2.1107 22 6 1.6341 -0.1509 -2.6095 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.4496 -1.4978 1.4101 27 1 2.7589 1.0463 2.1181 28 1 1.0871 0.6165 2.5525 29 1 3.4314 1.2616 4.4238 30 1 1.8093 0.8482 5.0291 31 1 3.5533 2.1683 7.9913 32 1 4.1614 -0.5599 -0.9103 33 1 3.6963 -1.8276 -2.0699 34 1 3.4369 -2.0774 -0.3267 35 1 1.3272 -2.3813 -2.5929 36 1 -0.0294 -1.4263 -1.7874 37 1 1.0033 0.7380 -2.6146 38 1 2.3601 -0.2168 -3.4199 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335365980.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:49 Heat of formation + Delta-G solvation = 14.860348 kcal Electronic energy + Delta-G solvation = -16479.011990 eV Core-core repulsion = 13934.891176 eV Total energy + Delta-G solvation = -2544.120814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09988 -38.49766 -36.25580 -35.33579 -33.40963 -30.47632 -29.41559 -27.69848 -24.86776 -23.78493 -23.56169 -22.87579 -19.51762 -18.52263 -18.23149 -16.89458 -16.72062 -16.17487 -15.77814 -15.07936 -14.89276 -14.45760 -14.22279 -13.98610 -13.84877 -13.77122 -13.45707 -13.16971 -13.05475 -12.91435 -12.62731 -12.48676 -12.41046 -12.31088 -12.11853 -11.95958 -11.74092 -11.41766 -11.22198 -10.85362 -10.54492 -10.37216 -9.30216 -8.19246 -6.27462 1.40642 1.42256 1.51477 1.95237 1.97429 2.41779 2.89796 3.15990 3.24666 3.26572 3.87825 4.02580 4.11954 4.20816 4.26144 4.37502 4.43216 4.50517 4.68355 4.79863 4.88037 4.89953 5.01332 5.03366 5.07454 5.09841 5.23537 5.29538 5.36140 5.40872 5.47803 5.63516 5.64142 5.79829 6.10027 6.23291 6.40067 6.76075 6.87799 7.41221 8.91718 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.042074 B = 0.004671 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.335564 B = 5992.396980 C = 6057.511910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.120 3.880 3 H 0.085 0.915 4 N -0.679 5.679 5 C 0.079 3.921 6 C 0.020 3.980 7 H 0.123 0.877 8 C 0.252 3.748 9 N -0.506 5.506 10 C 0.039 3.961 11 C -0.540 4.540 12 H 0.053 0.947 13 C 0.012 3.988 14 N -0.924 5.924 15 Si 0.949 3.051 16 H -0.266 1.266 17 H -0.284 1.284 18 H -0.276 1.276 19 C -0.121 4.121 20 C -0.096 4.096 21 C -0.186 4.186 22 C -0.167 4.167 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.334 0.666 27 H 0.104 0.896 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.000 1.000 31 H 0.264 0.736 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 -1.392 -18.781 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.010 3.990 3 H 0.103 0.897 4 N -0.309 5.309 5 C -0.051 4.051 6 C -0.002 4.002 7 H 0.140 0.860 8 C -0.064 4.064 9 N -0.183 5.183 10 C 0.000 4.000 11 C -0.578 4.578 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.564 5.564 15 Si 0.774 3.226 16 H -0.191 1.191 17 H -0.210 1.210 18 H -0.201 1.201 19 C -0.122 4.122 20 C -0.153 4.153 21 C -0.223 4.223 22 C -0.204 4.204 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.152 0.848 27 H 0.122 0.878 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.214 -2.374 -18.380 18.665 hybrid contribution -0.446 0.071 1.366 1.438 sum -2.660 -2.303 -17.015 17.375 Atomic orbital electron populations 1.22574 0.97000 1.02050 1.02369 1.21005 0.92271 0.97370 0.88346 0.89667 1.60600 1.57347 1.09411 1.03542 1.21945 1.00191 0.95203 0.87763 1.19227 0.94261 0.90658 0.96086 0.85977 1.29650 0.92954 0.92992 0.90797 1.81009 1.13041 1.13106 1.11181 1.18983 0.96392 0.93818 0.90833 1.21560 1.40878 0.96245 0.99083 0.92839 1.25704 0.96209 0.95526 1.01245 1.70027 1.48871 1.09334 1.28136 0.85693 0.79333 0.78525 0.79013 1.19135 1.21001 1.20120 1.21497 0.96593 1.03199 0.90879 1.21045 0.93276 1.00164 1.00798 1.23261 0.98704 0.96344 1.04003 1.23091 1.03548 0.97317 0.96476 0.93425 0.90599 0.92438 0.84822 0.87820 0.95070 0.94549 0.98209 0.92710 0.92678 0.93002 0.92415 0.88971 0.88412 0.88384 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.51 7.76 71.98 0.56 -2.95 16 2 C 0.12 2.47 2.85 44.92 0.13 2.60 16 3 H 0.09 1.74 7.80 -2.39 -0.02 1.72 16 4 N -0.68 -16.75 5.14 -491.54 -2.53 -19.27 16 5 C 0.08 2.22 4.92 86.30 0.42 2.65 16 6 C 0.02 0.70 2.42 -12.60 -0.03 0.67 16 7 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 8 C 0.25 10.08 12.97 89.45 1.16 11.24 16 9 N -0.51 -21.94 18.53 20.00 0.37 -21.57 16 10 C 0.04 1.78 4.42 29.85 0.13 1.91 16 11 C -0.54 -28.69 8.60 25.60 0.22 -28.47 16 12 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 13 C 0.01 0.66 5.46 84.66 0.46 1.13 16 14 N -0.92 -53.15 13.29 21.45 0.28 -52.86 16 15 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 17 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 C -0.12 -2.27 2.57 -52.18 -0.13 -2.41 16 20 C -0.10 -1.89 9.17 71.98 0.66 -1.23 16 21 C -0.19 -3.13 9.28 30.59 0.28 -2.85 16 22 C -0.17 -2.57 9.61 30.59 0.29 -2.28 16 23 H 0.05 1.02 7.45 -2.39 -0.02 1.00 16 24 H 0.08 1.23 7.07 -2.39 -0.02 1.21 16 25 H 0.06 1.15 6.96 -2.39 -0.02 1.13 16 26 H 0.33 8.88 7.55 -89.70 -0.68 8.21 16 27 H 0.10 2.68 8.05 -2.39 -0.02 2.67 16 28 H 0.03 0.90 7.43 -2.39 -0.02 0.88 16 29 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.00 -0.03 8.14 -2.38 -0.02 -0.04 16 31 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 0.89 8.11 -2.39 -0.02 0.87 16 34 H 0.06 1.29 7.65 -2.38 -0.02 1.27 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.61 5.85 -2.39 -0.01 1.60 16 37 H 0.10 1.37 7.60 -2.39 -0.02 1.36 16 38 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -59.83 314.13 4.67 -55.16 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.36 Total: 12.96 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 4.16 Total: -20.00 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -1.87 Total: -93.71 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -59.83 4.67 -55.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335365980.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.021 kcal (2) G-P(sol) polarization free energy of solvation -59.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds