Wall clock time and date at job start Sun Mar 29 2020 21:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47245 * 2 1 4 4 N 1.46900 * 109.46880 * 239.99875 * 2 1 3 5 5 C 1.46904 * 110.99779 * 85.00090 * 4 2 1 6 6 C 1.52996 * 109.46858 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47753 * 305.00128 * 6 5 4 8 8 C 1.47204 * 109.47042 * 64.99895 * 6 5 4 9 9 N 4.90932 * 82.27534 * 240.86403 * 2 1 3 10 10 C 1.52996 * 109.47153 * 184.99851 * 6 5 4 11 11 C 1.50702 * 109.47159 * 175.00123 * 10 6 5 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 6 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 6 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.52999 * 109.47225 * 119.99932 * 2 1 3 20 20 C 1.53000 * 115.55085 * 154.32862 * 19 2 1 21 21 C 1.53005 * 117.49891 * 8.62141 * 19 2 1 22 22 C 1.53002 * 60.00029 * 252.50914 * 21 19 2 23 23 H 1.09007 * 109.47110 * 300.00051 * 1 2 3 24 24 H 1.08995 * 109.47103 * 59.99915 * 1 2 3 25 25 H 1.08999 * 109.47421 * 180.02562 * 1 2 3 26 26 H 1.00897 * 111.00127 * 321.04444 * 4 2 1 27 27 H 1.08997 * 109.46933 * 59.99775 * 5 4 2 28 28 H 1.08996 * 109.47325 * 299.99917 * 5 4 2 29 29 H 1.09004 * 109.47066 * 55.00326 * 10 6 5 30 30 H 1.08994 * 109.47405 * 295.00156 * 10 6 5 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.46960 * 60.00093 * 20 19 2 33 33 H 1.09002 * 109.47195 * 179.97438 * 20 19 2 34 34 H 1.08996 * 109.47146 * 299.99897 * 20 19 2 35 35 H 1.08997 * 117.49420 * 359.97438 * 21 19 2 36 36 H 1.08994 * 117.50093 * 145.02278 * 21 19 2 37 37 H 1.08996 * 117.49978 * 252.51265 * 22 21 19 38 38 H 1.09004 * 117.50088 * 107.48400 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5961 -0.5329 -3.5741 7 1 3.5519 -1.0011 -3.3389 8 6 1.6227 -1.5693 -3.9553 9 7 0.8701 -2.3686 -4.2492 10 6 2.7799 0.4460 -4.7356 11 6 3.4008 -0.2733 -5.9053 12 1 3.6400 -1.3237 -5.8282 13 6 3.6578 0.4081 -7.0761 14 7 3.3662 1.6870 -7.1701 15 14 4.4204 -0.4853 -8.5285 16 1 3.5301 -1.5972 -8.9487 17 1 4.5944 0.4636 -9.6575 18 1 5.7434 -1.0326 -8.1341 19 6 2.0400 -0.7212 1.2492 20 6 3.4330 -1.3428 1.1299 21 6 1.0104 -1.4541 2.1117 22 6 1.6358 -0.1495 2.6096 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.4495 -1.4979 -1.4100 27 1 2.7588 1.0462 -2.1182 28 1 1.0871 0.6163 -2.5525 29 1 3.4317 1.2620 -4.4233 30 1 1.8102 0.8476 -5.0292 31 1 3.5474 2.1665 -7.9937 32 1 4.1610 -0.5628 0.9071 33 1 3.6964 -1.8274 2.0701 34 1 3.4341 -2.0807 0.3277 35 1 -0.0303 -1.4220 1.7893 36 1 1.3253 -2.3793 2.5942 37 1 2.3621 -0.2165 3.4196 38 1 1.0065 0.7406 2.6146 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335365983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:53 Heat of formation + Delta-G solvation = 30.535886 kcal Electronic energy + Delta-G solvation = -16478.020631 eV Core-core repulsion = 13934.579560 eV Total energy + Delta-G solvation = -2543.441071 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21200 -37.05257 -34.91384 -33.53864 -31.75998 -29.38503 -28.40646 -26.10365 -23.65059 -22.79436 -22.02399 -21.77448 -18.64670 -16.77413 -16.52600 -15.95188 -15.23792 -14.80709 -14.52428 -14.12744 -13.34322 -12.99057 -12.91340 -12.82665 -12.76849 -12.22269 -12.10706 -12.03144 -11.71647 -11.57158 -11.34743 -11.21739 -10.99785 -10.92090 -10.72501 -10.57847 -10.25783 -10.19347 -9.60485 -9.51096 -9.22882 -8.44660 -8.25265 -6.08971 -4.12090 3.31808 3.35898 3.39575 3.57428 3.62911 3.69407 4.22387 4.42502 4.67818 4.81736 4.83355 4.91946 5.05170 5.23577 5.28142 5.29153 5.53133 5.58085 5.63358 5.66796 5.77981 5.84287 5.90168 6.03076 6.04443 6.12114 6.19021 6.22864 6.40116 6.49047 6.56410 7.17618 7.43849 7.49438 7.54235 7.85962 8.23860 8.41265 8.92266 9.53298 11.01905 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.042107 B = 0.004671 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.820839 B = 5992.811391 C = 6057.855491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.120 3.880 3 H 0.083 0.917 4 N -0.682 5.682 5 C 0.067 3.933 6 C 0.007 3.993 7 H 0.111 0.889 8 C 0.242 3.758 9 N -0.478 5.478 10 C 0.033 3.967 11 C -0.527 4.527 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.108 4.108 20 C -0.099 4.099 21 C -0.187 4.187 22 C -0.179 4.179 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.339 0.661 27 H 0.091 0.909 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.096 -1.178 17.571 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.010 3.990 3 H 0.101 0.899 4 N -0.312 5.312 5 C -0.063 4.063 6 C -0.015 4.015 7 H 0.129 0.871 8 C -0.075 4.075 9 N -0.155 5.155 10 C -0.006 4.006 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.108 4.108 20 C -0.156 4.156 21 C -0.223 4.223 22 C -0.216 4.216 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.157 0.843 27 H 0.109 0.891 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.553 -2.150 17.154 17.475 hybrid contribution -0.344 -0.008 -1.031 1.087 sum -2.896 -2.158 16.123 16.523 Atomic orbital electron populations 1.22630 0.97573 1.02168 1.02121 1.20954 0.91832 0.97359 0.88906 0.89858 1.60607 1.57093 1.09811 1.03661 1.22112 1.00225 0.95298 0.88640 1.19331 0.93900 0.91900 0.96361 0.87144 1.29357 0.93312 0.93263 0.91561 1.81052 1.11939 1.12102 1.10405 1.19154 0.98209 0.93198 0.90026 1.21116 1.41428 0.96192 0.97769 0.92565 1.24949 0.95506 0.94827 0.98642 1.69931 1.47665 1.08119 1.27358 0.86655 0.79910 0.79522 0.81997 1.20282 1.21195 1.20000 1.21542 0.96525 1.02145 0.90609 1.21093 0.93076 1.00620 1.00781 1.23221 0.98859 0.95864 1.04393 1.23028 1.03773 0.97343 0.97462 0.92144 0.92399 0.92150 0.84294 0.89104 0.94788 0.94220 0.95817 0.92754 0.92224 0.94017 0.91002 0.88569 0.89293 0.89057 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 7.76 37.16 0.29 -1.67 16 2 C 0.12 1.34 2.85 -67.71 -0.19 1.14 16 3 H 0.08 0.94 7.80 -51.93 -0.40 0.53 16 4 N -0.68 -8.84 5.14 -106.73 -0.55 -9.39 16 5 C 0.07 0.98 4.92 -3.82 -0.02 0.96 16 6 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 7 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 8 C 0.24 4.88 12.98 -20.74 -0.27 4.61 16 9 N -0.48 -10.43 18.54 42.17 0.78 -9.65 16 10 C 0.03 0.76 4.42 -27.88 -0.12 0.63 16 11 C -0.53 -14.04 8.60 -34.44 -0.30 -14.34 16 12 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 15 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 19 C -0.11 -1.11 2.57 -154.50 -0.40 -1.51 16 20 C -0.10 -1.05 9.17 37.16 0.34 -0.71 16 21 C -0.19 -1.77 9.28 -26.73 -0.25 -2.02 16 22 C -0.18 -1.61 9.61 -26.73 -0.26 -1.87 16 23 H 0.06 0.56 7.07 -51.92 -0.37 0.19 16 24 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 25 H 0.06 0.65 6.96 -51.93 -0.36 0.28 16 26 H 0.34 4.68 7.55 -39.29 -0.30 4.38 16 27 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 28 H 0.03 0.51 7.43 -51.93 -0.39 0.12 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.40 8.11 -51.93 -0.42 -0.03 16 34 H 0.07 0.84 7.65 -51.93 -0.40 0.44 16 35 H 0.10 0.89 5.85 -51.93 -0.30 0.59 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.77 7.61 -51.93 -0.40 0.37 16 LS Contribution 314.15 15.07 4.73 4.73 Total: -1.00 -28.63 314.15 -7.02 -35.65 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.21 Total: 0.38 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.50 Total: -13.22 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.97 Total: -43.88 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.63 -7.02 -35.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335365983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.186 kcal (2) G-P(sol) polarization free energy of solvation -28.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds