Wall clock time and date at job start Sun Mar 29 2020 21:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47245 * 2 1 4 4 N 1.46900 * 109.46880 * 239.99875 * 2 1 3 5 5 C 1.46904 * 110.99779 * 85.00090 * 4 2 1 6 6 C 1.52996 * 109.46858 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47753 * 305.00128 * 6 5 4 8 8 C 1.47204 * 109.47042 * 64.99895 * 6 5 4 9 9 N 4.90932 * 82.27534 * 240.86403 * 2 1 3 10 10 C 1.52996 * 109.47153 * 184.99851 * 6 5 4 11 11 C 1.50702 * 109.47159 * 175.00123 * 10 6 5 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 6 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 6 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.52999 * 109.47225 * 119.99932 * 2 1 3 20 20 C 1.53000 * 115.55085 * 154.32862 * 19 2 1 21 21 C 1.53005 * 117.49891 * 8.62141 * 19 2 1 22 22 C 1.53002 * 60.00029 * 252.50914 * 21 19 2 23 23 H 1.09007 * 109.47110 * 300.00051 * 1 2 3 24 24 H 1.08995 * 109.47103 * 59.99915 * 1 2 3 25 25 H 1.08999 * 109.47421 * 180.02562 * 1 2 3 26 26 H 1.00897 * 111.00127 * 321.04444 * 4 2 1 27 27 H 1.08997 * 109.46933 * 59.99775 * 5 4 2 28 28 H 1.08996 * 109.47325 * 299.99917 * 5 4 2 29 29 H 1.09004 * 109.47066 * 55.00326 * 10 6 5 30 30 H 1.08994 * 109.47405 * 295.00156 * 10 6 5 31 31 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 32 32 H 1.09000 * 109.46960 * 60.00093 * 20 19 2 33 33 H 1.09002 * 109.47195 * 179.97438 * 20 19 2 34 34 H 1.08996 * 109.47146 * 299.99897 * 20 19 2 35 35 H 1.08997 * 117.49420 * 359.97438 * 21 19 2 36 36 H 1.08994 * 117.50093 * 145.02278 * 21 19 2 37 37 H 1.08996 * 117.49978 * 252.51265 * 22 21 19 38 38 H 1.09004 * 117.50088 * 107.48400 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5961 -0.5329 -3.5741 7 1 3.5519 -1.0011 -3.3389 8 6 1.6227 -1.5693 -3.9553 9 7 0.8701 -2.3686 -4.2492 10 6 2.7799 0.4460 -4.7356 11 6 3.4008 -0.2733 -5.9053 12 1 3.6400 -1.3237 -5.8282 13 6 3.6578 0.4081 -7.0761 14 7 3.3662 1.6870 -7.1701 15 14 4.4204 -0.4853 -8.5285 16 1 3.5301 -1.5972 -8.9487 17 1 4.5944 0.4636 -9.6575 18 1 5.7434 -1.0326 -8.1341 19 6 2.0400 -0.7212 1.2492 20 6 3.4330 -1.3428 1.1299 21 6 1.0104 -1.4541 2.1117 22 6 1.6358 -0.1495 2.6096 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.4495 -1.4979 -1.4100 27 1 2.7588 1.0462 -2.1182 28 1 1.0871 0.6163 -2.5525 29 1 3.4317 1.2620 -4.4233 30 1 1.8102 0.8476 -5.0292 31 1 3.5474 2.1665 -7.9937 32 1 4.1610 -0.5628 0.9071 33 1 3.6964 -1.8274 2.0701 34 1 3.4341 -2.0807 0.3277 35 1 -0.0303 -1.4220 1.7893 36 1 1.3253 -2.3793 2.5942 37 1 2.3621 -0.2165 3.4196 38 1 1.0065 0.7406 2.6146 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335365983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:52 Heat of formation + Delta-G solvation = 14.869580 kcal Electronic energy + Delta-G solvation = -16478.699973 eV Core-core repulsion = 13934.579560 eV Total energy + Delta-G solvation = -2544.120413 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.09942 -38.48906 -36.24499 -35.33281 -33.40768 -30.47611 -29.41569 -27.69635 -24.86727 -23.78493 -23.56117 -22.87553 -19.51760 -18.51825 -18.23092 -16.89429 -16.71926 -16.17726 -15.77833 -15.07770 -14.89196 -14.45095 -14.22180 -13.98063 -13.84618 -13.77024 -13.45956 -13.16676 -13.04545 -12.91691 -12.63869 -12.47108 -12.40919 -12.31719 -12.11732 -11.95477 -11.74080 -11.41504 -11.22929 -10.85345 -10.54368 -10.37182 -9.30237 -8.18984 -6.27230 1.41710 1.42824 1.50138 1.94678 1.96854 2.41958 2.89759 3.16169 3.24636 3.26411 3.87855 4.02581 4.11930 4.20764 4.26140 4.37486 4.43196 4.50460 4.68357 4.79854 4.88005 4.89935 5.01350 5.03355 5.07457 5.09855 5.23551 5.29517 5.36183 5.40858 5.47747 5.63602 5.64174 5.79851 6.10055 6.23343 6.40075 6.76044 6.87757 7.41309 8.91768 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.042107 B = 0.004671 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.820839 B = 5992.811391 C = 6057.855491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.120 3.880 3 H 0.085 0.915 4 N -0.679 5.679 5 C 0.079 3.921 6 C 0.020 3.980 7 H 0.123 0.877 8 C 0.252 3.748 9 N -0.506 5.506 10 C 0.039 3.961 11 C -0.540 4.540 12 H 0.054 0.946 13 C 0.012 3.988 14 N -0.924 5.924 15 Si 0.948 3.052 16 H -0.281 1.281 17 H -0.282 1.282 18 H -0.263 1.263 19 C -0.121 4.121 20 C -0.096 4.096 21 C -0.186 4.186 22 C -0.167 4.167 23 H 0.075 0.925 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.334 0.666 27 H 0.104 0.896 28 H 0.031 0.969 29 H 0.036 0.964 30 H -0.001 1.001 31 H 0.264 0.736 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.743 -1.405 18.787 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.010 3.990 3 H 0.103 0.897 4 N -0.309 5.309 5 C -0.051 4.051 6 C -0.002 4.002 7 H 0.140 0.860 8 C -0.064 4.064 9 N -0.184 5.184 10 C 0.000 4.000 11 C -0.579 4.579 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.563 5.563 15 Si 0.774 3.226 16 H -0.207 1.207 17 H -0.207 1.207 18 H -0.188 1.188 19 C -0.122 4.122 20 C -0.153 4.153 21 C -0.223 4.223 22 C -0.204 4.204 23 H 0.094 0.906 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.152 0.848 27 H 0.122 0.878 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.194 -2.382 18.387 18.670 hybrid contribution -0.466 0.061 -1.371 1.449 sum -2.660 -2.320 17.016 17.378 Atomic orbital electron populations 1.22576 0.97002 1.02051 1.02367 1.21003 0.92268 0.97370 0.88348 0.89668 1.60596 1.57354 1.09411 1.03539 1.21944 1.00185 0.95209 0.87769 1.19229 0.94279 0.90621 0.96078 0.85961 1.29698 0.92940 0.92987 0.90777 1.81052 1.12980 1.13125 1.11207 1.18978 0.96372 0.93822 0.90833 1.21539 1.41016 0.96290 0.99009 0.92809 1.25706 0.96191 0.95529 1.01253 1.70027 1.48914 1.09339 1.28063 0.85758 0.79426 0.78285 0.79164 1.20702 1.20701 1.18756 1.21499 0.96605 1.03198 0.90868 1.21043 0.93283 1.00160 1.00790 1.23262 0.98684 0.96365 1.03999 1.23094 1.03552 0.97315 0.96480 0.90606 0.93424 0.92434 0.84819 0.87821 0.95071 0.94545 0.98235 0.92711 0.92679 0.93001 0.92416 0.88410 0.88966 0.88206 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.51 7.76 71.98 0.56 -2.96 16 2 C 0.12 2.47 2.85 44.92 0.13 2.60 16 3 H 0.09 1.74 7.80 -2.39 -0.02 1.72 16 4 N -0.68 -16.74 5.14 -491.58 -2.53 -19.27 16 5 C 0.08 2.22 4.92 86.30 0.42 2.65 16 6 C 0.02 0.71 2.42 -12.60 -0.03 0.68 16 7 H 0.12 4.13 8.14 -2.39 -0.02 4.12 16 8 C 0.25 10.06 12.98 89.44 1.16 11.22 16 9 N -0.51 -21.94 18.54 20.01 0.37 -21.57 16 10 C 0.04 1.79 4.42 29.85 0.13 1.92 16 11 C -0.54 -28.72 8.60 25.60 0.22 -28.50 16 12 H 0.05 2.83 7.59 -2.91 -0.02 2.80 16 13 C 0.01 0.67 5.46 84.66 0.46 1.13 16 14 N -0.92 -53.16 13.29 21.45 0.28 -52.87 16 15 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 19 C -0.12 -2.27 2.57 -52.18 -0.13 -2.41 16 20 C -0.10 -1.89 9.17 71.98 0.66 -1.23 16 21 C -0.19 -3.13 9.28 30.60 0.28 -2.85 16 22 C -0.17 -2.58 9.61 30.60 0.29 -2.28 16 23 H 0.08 1.23 7.07 -2.38 -0.02 1.21 16 24 H 0.05 1.02 7.45 -2.39 -0.02 1.00 16 25 H 0.06 1.15 6.96 -2.39 -0.02 1.13 16 26 H 0.33 8.88 7.55 -89.70 -0.68 8.20 16 27 H 0.10 2.68 8.05 -2.39 -0.02 2.66 16 28 H 0.03 0.90 7.43 -2.39 -0.02 0.88 16 29 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 0.89 8.11 -2.39 -0.02 0.87 16 34 H 0.06 1.29 7.65 -2.39 -0.02 1.27 16 35 H 0.10 1.61 5.85 -2.39 -0.01 1.60 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.37 7.61 -2.38 -0.02 1.36 16 Total: -1.00 -59.77 314.15 4.67 -55.10 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.36 Total: 13.08 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 4.16 Total: -20.01 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -1.87 Total: -93.71 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -59.77 4.67 -55.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335365983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.970 kcal (2) G-P(sol) polarization free energy of solvation -59.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds