Wall clock time and date at job start Sun Mar 29 2020 21:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47472 * 2 1 4 4 C 1.46900 * 110.99988 * 160.40530 * 3 2 1 5 5 C 1.50699 * 109.47160 * 287.87985 * 4 3 2 6 6 H 1.07998 * 120.00387 * 3.57111 * 5 4 3 7 7 C 1.37885 * 119.99755 * 183.57731 * 5 4 3 8 8 N 1.31513 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00157 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46901 * 59.99464 * 9 7 5 11 11 H 1.48494 * 109.47575 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47087 * 300.00327 * 9 7 5 13 13 C 1.38997 * 110.99932 * 284.36237 * 3 2 1 14 14 N 1.32681 * 120.09442 * 306.42476 * 13 3 2 15 15 C 1.32216 * 119.90973 * 179.97438 * 14 13 3 16 16 C 1.38207 * 120.10837 * 0.02562 * 15 14 13 17 17 N 1.32250 * 120.18675 * 359.97438 * 16 15 14 18 18 C 1.31943 * 120.08496 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.05170 * 180.02562 * 18 17 16 20 20 N 1.46902 * 109.46740 * 84.26925 * 19 18 17 21 21 H 1.09000 * 109.46697 * 304.75542 * 1 2 3 22 22 H 1.08998 * 109.47071 * 64.75323 * 1 2 3 23 23 H 1.08998 * 109.46862 * 184.75623 * 1 2 3 24 24 H 1.08999 * 109.46921 * 239.99779 * 2 1 3 25 25 H 1.09005 * 109.47165 * 120.00465 * 2 1 3 26 26 H 1.09004 * 109.46954 * 47.88045 * 4 3 2 27 27 H 1.09003 * 109.46797 * 167.87663 * 4 3 2 28 28 H 0.97001 * 120.00149 * 180.02562 * 8 7 5 29 29 H 1.08003 * 119.94650 * 180.27925 * 15 14 13 30 30 H 1.08004 * 119.90862 * 179.97438 * 16 15 14 31 31 H 1.08994 * 109.47394 * 204.27097 * 19 18 17 32 32 H 1.09001 * 109.47460 * 324.27477 * 19 18 17 33 33 H 1.00897 * 111.00067 * 61.53206 * 20 19 18 34 34 H 1.00905 * 110.99825 * 185.47729 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4134 1.4505 0.4599 5 6 3.4655 1.1911 1.9435 6 1 2.5624 0.9401 2.4799 7 6 4.6663 1.2743 2.6161 8 7 5.7661 1.5796 1.9629 9 14 4.7309 0.9535 4.4552 10 1 4.2584 -0.4266 4.7338 11 1 6.1279 1.1043 4.9353 12 1 3.8574 1.9270 5.1585 13 6 1.8824 1.9619 -1.2571 14 7 2.3910 1.3599 -2.3246 15 6 2.2577 1.9117 -3.5187 16 6 1.5902 3.1141 -3.6562 17 7 1.0817 3.7176 -2.5950 18 6 1.2094 3.1731 -1.3999 19 6 0.6292 3.8612 -0.1912 20 7 -0.7909 3.5083 -0.0617 21 1 -0.3633 0.5859 0.8443 22 1 -0.3633 0.4383 -0.9295 23 1 -0.3633 -1.0241 0.0852 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 4.0039 0.6973 -0.0616 27 1 3.8192 2.4401 0.2496 28 1 6.6109 1.6379 2.4360 29 1 2.6675 1.4200 -4.3886 30 1 1.4836 3.5622 -4.6331 31 1 1.1660 3.5411 0.7017 32 1 0.7262 4.9408 -0.3061 33 1 -0.9059 2.5147 0.0711 34 1 -1.2252 4.0258 0.6878 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336543499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:38 Heat of formation + Delta-G solvation = 56.173644 kcal Electronic energy + Delta-G solvation = -17091.531454 eV Core-core repulsion = 14445.661776 eV Total energy + Delta-G solvation = -2645.869678 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.86407 -37.02586 -34.95534 -33.13671 -32.55860 -30.90882 -29.51423 -26.62271 -25.65505 -23.75825 -22.55237 -21.83980 -20.50782 -17.49615 -16.68708 -16.34377 -15.86508 -15.40508 -14.78539 -14.46080 -14.05421 -13.98250 -13.37129 -13.27448 -12.73310 -12.32479 -12.15951 -11.77665 -11.43660 -11.20970 -11.09432 -10.95521 -10.73395 -10.54557 -10.42768 -10.07172 -9.54911 -8.75984 -8.66872 -8.55932 -8.42387 -7.67305 -6.12131 -4.15372 1.14238 1.52862 3.27604 3.32424 3.34263 4.00369 4.16621 4.39304 4.52044 4.74379 4.89911 5.12703 5.23515 5.33375 5.58593 5.62513 5.64280 5.81469 5.93699 6.09902 6.15830 6.30639 6.49913 6.62125 6.64764 7.07576 7.22288 7.31036 7.63028 7.67346 7.71405 7.83138 7.99210 8.22485 8.37153 8.90300 9.48747 10.98459 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.026436 B = 0.007788 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.901534 B = 3594.357559 C = 3802.011520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 N -0.484 5.484 4 C 0.203 3.797 5 C -0.512 4.512 6 H 0.066 0.934 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.280 3.720 14 N -0.471 5.471 15 C 0.056 3.944 16 C 0.020 3.980 17 N -0.422 5.422 18 C 0.104 3.896 19 C 0.121 3.879 20 N -0.842 5.842 21 H 0.059 0.941 22 H 0.040 0.960 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.091 0.909 26 H 0.005 0.995 27 H 0.028 0.972 28 H 0.264 0.736 29 H 0.160 0.840 30 H 0.163 0.837 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.341 0.659 34 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.184 0.838 -6.409 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 N -0.209 5.209 4 C 0.080 3.920 5 C -0.551 4.551 6 H 0.084 0.916 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.201 1.201 13 C 0.048 3.952 14 N -0.189 5.189 15 C -0.106 4.106 16 C -0.139 4.139 17 N -0.137 5.137 18 C -0.041 4.041 19 C -0.011 4.011 20 N -0.373 5.373 21 H 0.078 0.922 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.109 0.891 26 H 0.023 0.977 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.177 0.823 30 H 0.180 0.820 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.155 0.845 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.312 1.420 -6.776 11.603 hybrid contribution 1.084 -0.959 1.136 1.840 sum -8.228 0.461 -5.639 9.986 Atomic orbital electron populations 1.21810 0.96385 1.00927 1.01095 1.22068 0.94243 0.88517 1.02366 1.60552 1.26454 1.18823 1.15030 1.19788 0.79113 0.97228 0.95840 1.21025 0.94105 1.47763 0.92188 0.91621 1.24988 0.95474 0.95203 0.98745 1.69954 0.98983 1.48130 1.36268 0.86508 0.77004 0.78839 0.84748 1.20169 1.21296 1.20109 1.21178 0.91449 0.92344 0.90258 1.68638 1.16014 1.34613 0.99634 1.23549 0.96949 0.94320 0.95734 1.23535 0.97407 0.94477 0.98445 1.68198 1.14843 1.32248 0.98424 1.21883 0.95750 0.92753 0.93695 1.20444 0.88509 0.98796 0.93313 1.58722 1.13859 1.12079 1.52643 0.92158 0.94087 0.92650 0.93918 0.89065 0.97681 0.95354 0.92672 0.82300 0.82028 0.90703 0.90225 0.84541 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.27 37.16 0.34 -1.88 16 2 C 0.06 1.06 5.48 -3.82 -0.02 1.04 16 3 N -0.48 -10.21 3.24 -174.42 -0.57 -10.77 16 4 C 0.20 5.23 4.63 -4.98 -0.02 5.21 16 5 C -0.51 -13.78 8.40 -34.44 -0.29 -14.07 16 6 H 0.07 1.71 7.59 -52.49 -0.40 1.31 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.28 5.61 4.64 -154.72 -0.72 4.89 16 14 N -0.47 -9.12 9.52 -12.24 -0.12 -9.24 16 15 C 0.06 0.86 11.22 -17.40 -0.20 0.66 16 16 C 0.02 0.30 11.21 -17.38 -0.19 0.10 16 17 N -0.42 -7.37 10.41 -9.12 -0.09 -7.46 16 18 C 0.10 1.92 6.37 -82.15 -0.52 1.40 16 19 C 0.12 2.02 6.93 -4.97 -0.03 1.99 16 20 N -0.84 -12.17 9.58 -11.41 -0.11 -12.28 16 21 H 0.06 0.89 7.43 -51.93 -0.39 0.51 16 22 H 0.04 0.64 7.78 -51.93 -0.40 0.24 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.04 0.84 7.28 -51.93 -0.38 0.46 16 25 H 0.09 1.85 6.99 -51.93 -0.36 1.49 16 26 H 0.01 0.15 8.05 -51.93 -0.42 -0.27 16 27 H 0.03 0.80 7.97 -51.93 -0.41 0.39 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 30 H 0.16 1.70 8.06 -52.48 -0.42 1.27 16 31 H 0.07 1.38 7.29 -51.93 -0.38 1.00 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.34 4.97 7.52 -39.29 -0.30 4.67 16 34 H 0.34 4.06 9.08 -39.29 -0.36 3.70 16 LS Contribution 288.21 15.07 4.34 4.34 Total: -1.00 -30.58 288.21 -7.20 -37.78 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.62 Total: 6.19 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.75 Total: 0.84 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -0.15 Total: -65.15 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.58 -7.20 -37.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336543499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.957 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds