Wall clock time and date at job start Sun Mar 29 2020 21:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47472 * 2 1 4 4 C 1.46900 * 110.99988 * 160.40530 * 3 2 1 5 5 C 1.50699 * 109.47160 * 287.87985 * 4 3 2 6 6 H 1.07998 * 120.00387 * 3.57111 * 5 4 3 7 7 C 1.37885 * 119.99755 * 183.57731 * 5 4 3 8 8 N 1.31513 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00157 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.46901 * 59.99464 * 9 7 5 11 11 H 1.48494 * 109.47575 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47087 * 300.00327 * 9 7 5 13 13 C 1.38997 * 110.99932 * 284.36237 * 3 2 1 14 14 N 1.32681 * 120.09442 * 306.42476 * 13 3 2 15 15 C 1.32216 * 119.90973 * 179.97438 * 14 13 3 16 16 C 1.38207 * 120.10837 * 0.02562 * 15 14 13 17 17 N 1.32250 * 120.18675 * 359.97438 * 16 15 14 18 18 C 1.31943 * 120.08496 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.05170 * 180.02562 * 18 17 16 20 20 N 1.46902 * 109.46740 * 84.26925 * 19 18 17 21 21 H 1.09000 * 109.46697 * 304.75542 * 1 2 3 22 22 H 1.08998 * 109.47071 * 64.75323 * 1 2 3 23 23 H 1.08998 * 109.46862 * 184.75623 * 1 2 3 24 24 H 1.08999 * 109.46921 * 239.99779 * 2 1 3 25 25 H 1.09005 * 109.47165 * 120.00465 * 2 1 3 26 26 H 1.09004 * 109.46954 * 47.88045 * 4 3 2 27 27 H 1.09003 * 109.46797 * 167.87663 * 4 3 2 28 28 H 0.97001 * 120.00149 * 180.02562 * 8 7 5 29 29 H 1.08003 * 119.94650 * 180.27925 * 15 14 13 30 30 H 1.08004 * 119.90862 * 179.97438 * 16 15 14 31 31 H 1.08994 * 109.47394 * 204.27097 * 19 18 17 32 32 H 1.09001 * 109.47460 * 324.27477 * 19 18 17 33 33 H 1.00897 * 111.00067 * 61.53206 * 20 19 18 34 34 H 1.00905 * 110.99825 * 185.47729 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4134 1.4505 0.4599 5 6 3.4655 1.1911 1.9435 6 1 2.5624 0.9401 2.4799 7 6 4.6663 1.2743 2.6161 8 7 5.7661 1.5796 1.9629 9 14 4.7309 0.9535 4.4552 10 1 4.2584 -0.4266 4.7338 11 1 6.1279 1.1043 4.9353 12 1 3.8574 1.9270 5.1585 13 6 1.8824 1.9619 -1.2571 14 7 2.3910 1.3599 -2.3246 15 6 2.2577 1.9117 -3.5187 16 6 1.5902 3.1141 -3.6562 17 7 1.0817 3.7176 -2.5950 18 6 1.2094 3.1731 -1.3999 19 6 0.6292 3.8612 -0.1912 20 7 -0.7909 3.5083 -0.0617 21 1 -0.3633 0.5859 0.8443 22 1 -0.3633 0.4383 -0.9295 23 1 -0.3633 -1.0241 0.0852 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 4.0039 0.6973 -0.0616 27 1 3.8192 2.4401 0.2496 28 1 6.6109 1.6379 2.4360 29 1 2.6675 1.4200 -4.3886 30 1 1.4836 3.5622 -4.6331 31 1 1.1660 3.5411 0.7017 32 1 0.7262 4.9408 -0.3061 33 1 -0.9059 2.5147 0.0711 34 1 -1.2252 4.0258 0.6878 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336543499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:37 Heat of formation + Delta-G solvation = 32.885054 kcal Electronic energy + Delta-G solvation = -17092.541323 eV Core-core repulsion = 14445.661776 eV Total energy + Delta-G solvation = -2646.879547 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.23882 -38.60732 -36.25014 -34.97895 -34.14047 -32.27208 -31.12312 -28.46007 -26.94622 -25.28091 -24.37572 -23.14714 -22.08515 -18.99963 -18.48106 -17.75979 -17.37500 -16.99936 -16.33099 -15.90648 -15.51033 -15.31489 -14.87985 -14.75732 -14.34552 -14.12956 -13.63960 -13.07296 -12.97299 -12.81188 -12.74835 -12.55460 -12.42480 -12.17757 -11.92298 -11.88238 -11.53276 -10.66303 -10.22425 -10.00844 -9.69689 -9.30602 -8.24257 -6.35846 -0.18289 0.17308 1.41718 1.44840 1.52813 2.36728 2.68857 2.77798 3.09390 3.23808 3.41085 3.62071 3.88915 4.09673 4.27362 4.27501 4.41428 4.44998 4.63955 4.76299 4.84507 4.89552 4.96447 5.04735 5.13688 5.31315 5.35678 5.62502 5.96423 6.03063 6.11871 6.33600 6.54987 6.59941 6.77508 6.89043 7.33779 8.87166 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.026436 B = 0.007788 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.901534 B = 3594.357559 C = 3802.011520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.055 3.945 3 N -0.477 5.477 4 C 0.227 3.773 5 C -0.522 4.522 6 H 0.072 0.928 7 C 0.003 3.997 8 N -0.935 5.935 9 Si 0.974 3.026 10 H -0.265 1.265 11 H -0.286 1.286 12 H -0.265 1.265 13 C 0.246 3.754 14 N -0.502 5.502 15 C 0.055 3.945 16 C 0.039 3.961 17 N -0.436 5.436 18 C 0.093 3.907 19 C 0.128 3.872 20 N -0.836 5.836 21 H 0.066 0.934 22 H 0.039 0.961 23 H 0.080 0.920 24 H 0.030 0.970 25 H 0.074 0.926 26 H -0.034 1.034 27 H -0.009 1.009 28 H 0.265 0.735 29 H 0.201 0.799 30 H 0.212 0.788 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.342 0.658 34 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.726 0.941 -6.874 12.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.072 4.072 3 N -0.201 5.201 4 C 0.102 3.898 5 C -0.560 4.560 6 H 0.091 0.909 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.798 3.202 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.015 3.985 14 N -0.220 5.220 15 C -0.107 4.107 16 C -0.121 4.121 17 N -0.152 5.152 18 C -0.049 4.049 19 C -0.004 4.004 20 N -0.368 5.368 21 H 0.085 0.915 22 H 0.058 0.942 23 H 0.099 0.901 24 H 0.049 0.951 25 H 0.092 0.908 26 H -0.016 1.016 27 H 0.010 0.990 28 H 0.074 0.926 29 H 0.218 0.782 30 H 0.229 0.771 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.155 0.845 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.904 1.527 -7.211 13.161 hybrid contribution 1.561 -0.967 1.047 2.113 sum -9.343 0.560 -6.164 11.207 Atomic orbital electron populations 1.21678 0.93037 1.02668 1.01238 1.22094 0.96882 0.87338 1.00861 1.60408 1.23109 1.19816 1.16747 1.19269 0.81508 0.93647 0.95329 1.21335 0.94469 1.47341 0.92824 0.90947 1.25961 0.94956 0.94730 1.03912 1.70104 0.99656 1.49349 1.38380 0.85364 0.77103 0.79272 0.78459 1.18996 1.21136 1.18967 1.21123 0.93905 0.93521 0.89952 1.68558 1.16733 1.35755 1.00936 1.24284 0.96222 0.94703 0.95465 1.24367 0.94585 0.93643 0.99531 1.68285 1.15645 1.32606 0.98615 1.22001 0.95923 0.92221 0.94780 1.20297 0.89351 0.98886 0.91905 1.58701 1.12323 1.12336 1.53425 0.91521 0.94236 0.90123 0.95126 0.90798 1.01589 0.99044 0.92621 0.78235 0.77121 0.93154 0.89547 0.84515 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.27 71.98 0.67 -3.16 16 2 C 0.06 2.16 5.48 86.30 0.47 2.64 16 3 N -0.48 -20.83 3.24 -705.75 -2.29 -23.12 16 4 C 0.23 12.34 4.63 85.56 0.40 12.73 16 5 C -0.52 -28.91 8.40 25.60 0.22 -28.70 16 6 H 0.07 3.83 7.59 -2.91 -0.02 3.81 16 7 C 0.00 0.16 5.46 84.66 0.46 0.62 16 8 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 9 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 13 C 0.25 10.00 4.64 133.02 0.62 10.62 16 14 N -0.50 -19.45 9.52 -192.64 -1.83 -21.28 16 15 C 0.06 1.58 11.22 84.63 0.95 2.53 16 16 C 0.04 1.01 11.21 84.62 0.95 1.96 16 17 N -0.44 -14.45 10.41 -182.76 -1.90 -16.35 16 18 C 0.09 3.43 6.37 42.80 0.27 3.71 16 19 C 0.13 4.27 6.93 85.56 0.59 4.86 16 20 N -0.84 -23.24 9.58 -190.01 -1.82 -25.06 16 21 H 0.07 1.89 7.43 -2.39 -0.02 1.88 16 22 H 0.04 1.19 7.78 -2.39 -0.02 1.17 16 23 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.03 1.25 7.28 -2.39 -0.02 1.23 16 25 H 0.07 3.09 6.99 -2.38 -0.02 3.07 16 26 H -0.03 -2.04 8.05 -2.39 -0.02 -2.06 16 27 H -0.01 -0.52 7.97 -2.39 -0.02 -0.54 16 28 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.20 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.21 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.05 1.91 7.29 -2.39 -0.02 1.90 16 32 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.34 9.57 7.52 -89.70 -0.67 8.89 16 34 H 0.36 7.98 9.08 -89.69 -0.81 7.16 16 Total: -1.00 -68.78 288.21 -0.31 -69.09 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -0.37 Total: 19.61 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.59 Total: 7.81 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -7.56 Total: -141.89 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -68.78 -0.31 -69.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336543499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.978 kcal (2) G-P(sol) polarization free energy of solvation -68.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds