Wall clock time and date at job start Sun Mar 29 2020 21:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47283 * 2 1 4 4 C 1.50706 * 109.47325 * 240.00279 * 2 1 3 5 5 H 1.07996 * 120.00172 * 239.99794 * 4 2 1 6 6 C 1.37874 * 119.99960 * 59.99750 * 4 2 1 7 7 N 1.31523 * 120.00058 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00286 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47043 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47486 * 119.99892 * 8 6 4 11 11 H 1.48505 * 109.47340 * 240.00146 * 8 6 4 12 12 N 1.46902 * 109.47568 * 120.00249 * 2 1 3 13 13 C 1.46903 * 111.00202 * 177.96607 * 12 2 1 14 14 C 1.38997 * 110.99652 * 301.92381 * 12 2 1 15 15 N 1.32683 * 120.09664 * 304.11544 * 14 12 2 16 16 C 1.32214 * 119.91313 * 179.79589 * 15 14 12 17 17 C 1.38207 * 120.10540 * 0.46330 * 16 15 14 18 18 N 1.32235 * 120.18898 * 359.78907 * 17 16 15 19 19 C 1.31957 * 120.08547 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.04888 * 180.02562 * 19 18 17 21 21 N 1.46902 * 109.46858 * 275.01108 * 20 19 18 22 22 H 1.08992 * 109.47273 * 295.75558 * 1 2 3 23 23 H 1.09003 * 109.46707 * 175.76070 * 1 2 3 24 24 H 1.08998 * 109.47060 * 55.75822 * 1 2 3 25 25 H 0.96996 * 120.00220 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.46709 * 55.66423 * 13 12 2 27 27 H 1.08999 * 109.46917 * 175.65796 * 13 12 2 28 28 H 1.08994 * 109.47343 * 295.65987 * 13 12 2 29 29 H 1.08007 * 119.94685 * 180.21439 * 16 15 14 30 30 H 1.07999 * 119.90306 * 179.77231 * 17 16 15 31 31 H 1.09000 * 109.48054 * 35.01044 * 20 19 18 32 32 H 1.08998 * 109.47366 * 155.01434 * 20 19 18 33 33 H 1.00903 * 111.00359 * 181.49889 * 21 20 19 34 34 H 1.00903 * 111.00526 * 305.45381 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1465 -2.2868 -3.6039 10 1 1.1661 -1.5865 -4.8162 11 1 3.1466 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 3.4874 -0.7544 1.2092 14 6 1.5388 -0.0879 2.3549 15 7 1.7537 1.2038 2.5688 16 6 1.2912 1.7761 3.6672 17 6 0.5929 1.0290 4.5969 18 7 0.3807 -0.2597 4.3903 19 6 0.8349 -0.8376 3.2943 20 6 0.5921 -2.3062 3.0595 21 7 1.6351 -3.0892 3.7355 22 1 -0.3633 0.4465 0.9255 23 1 -0.3633 -1.0249 -0.0760 24 1 -0.3633 0.5782 -0.8495 25 1 0.7088 1.1615 -3.4843 26 1 3.8941 0.2531 1.1215 27 1 3.8259 -1.2028 2.1432 28 1 3.8312 -1.3593 0.3702 29 1 1.4628 2.8284 3.8402 30 1 0.2197 1.4990 5.4947 31 1 -0.3844 -2.5815 3.4579 32 1 0.6192 -2.5124 1.9895 33 1 1.5085 -4.0769 3.5728 34 1 2.5551 -2.7904 3.4482 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337795510.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:02 Heat of formation + Delta-G solvation = 63.563843 kcal Electronic energy + Delta-G solvation = -17247.625829 eV Core-core repulsion = 14602.076614 eV Total energy + Delta-G solvation = -2645.549215 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88048 -37.05833 -34.99123 -33.39407 -32.46897 -30.15737 -29.26590 -25.88904 -25.67665 -24.58337 -22.90373 -21.86307 -20.02496 -17.52989 -16.55105 -16.24538 -15.81716 -15.47031 -14.80359 -14.46626 -13.88623 -13.78780 -13.39410 -13.14330 -12.53039 -12.29355 -11.96877 -11.77144 -11.18882 -11.13923 -11.01781 -10.79223 -10.64854 -10.30524 -10.27869 -10.08741 -9.23464 -8.71482 -8.66895 -8.55725 -8.41622 -7.61946 -6.09539 -4.15113 1.13796 1.53846 3.24749 3.32828 3.35947 4.00773 4.19052 4.38484 4.51827 4.78159 4.89114 5.09635 5.23054 5.36934 5.59213 5.61521 5.89563 6.06141 6.12192 6.27471 6.52159 6.59743 6.70770 6.93834 6.98435 7.25516 7.37309 7.52674 7.61018 7.71117 7.73388 7.92456 8.12238 8.24929 8.43713 8.89389 9.49768 10.97788 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.031943 B = 0.007883 C = 0.007138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.339711 B = 3551.231203 C = 3921.985979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.217 3.783 3 H 0.020 0.980 4 C -0.508 4.508 5 H 0.065 0.935 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.488 5.488 13 C 0.046 3.954 14 C 0.285 3.715 15 N -0.466 5.466 16 C 0.057 3.943 17 C 0.020 3.980 18 N -0.422 5.422 19 C 0.097 3.903 20 C 0.122 3.878 21 N -0.841 5.841 22 H -0.002 1.002 23 H 0.035 0.965 24 H 0.087 0.913 25 H 0.261 0.739 26 H 0.031 0.969 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.160 0.840 30 H 0.162 0.838 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.343 0.657 34 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.868 -2.245 10.103 10.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.113 3.887 3 H 0.038 0.962 4 C -0.547 4.547 5 H 0.083 0.917 6 C -0.141 4.141 7 N -0.528 5.528 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.213 5.213 13 C -0.101 4.101 14 C 0.052 3.948 15 N -0.184 5.184 16 C -0.105 4.105 17 C -0.139 4.139 18 N -0.138 5.138 19 C -0.047 4.047 20 C -0.009 4.009 21 N -0.370 5.370 22 H 0.017 0.983 23 H 0.054 0.946 24 H 0.106 0.894 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.177 0.823 30 H 0.180 0.820 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.155 0.845 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.314 -2.300 10.595 10.846 hybrid contribution 0.742 0.396 -1.799 1.986 sum 1.057 -1.904 8.796 9.062 Atomic orbital electron populations 1.21796 0.97689 1.00119 0.99028 1.19407 0.92168 0.93053 0.84093 0.96242 1.21095 1.31626 1.12523 0.89454 0.91653 1.24929 0.95076 0.95016 0.99076 1.69918 1.36573 1.22819 1.23515 0.86422 0.78588 0.79551 0.82722 1.19694 1.20988 1.21066 1.60584 1.09771 1.50517 1.00436 1.22182 0.86112 1.00917 1.00917 1.21130 0.92894 0.87660 0.93082 1.68719 1.17950 1.12239 1.19475 1.23586 0.95163 1.01316 0.90394 1.23530 0.98873 0.90868 1.00646 1.68185 1.16175 1.10641 1.18767 1.21878 0.95246 0.97668 0.89901 1.20440 0.95662 0.86193 0.98593 1.58762 1.05928 1.07723 1.64625 0.98337 0.94559 0.89431 0.92886 0.94992 0.93979 0.89683 0.82298 0.82035 0.90234 0.90987 0.84486 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.83 37.16 0.33 -2.85 16 2 C 0.22 5.43 1.87 -68.86 -0.13 5.30 16 3 H 0.02 0.56 7.84 -51.93 -0.41 0.16 16 4 C -0.51 -13.43 7.98 -34.44 -0.27 -13.70 16 5 H 0.07 1.69 6.54 -52.49 -0.34 1.35 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.06 11.37 55.43 0.63 -24.43 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.49 -10.28 3.50 -174.63 -0.61 -10.89 16 13 C 0.05 0.88 9.08 60.07 0.55 1.42 16 14 C 0.28 5.67 3.72 -154.73 -0.58 5.09 16 15 N -0.47 -9.21 9.85 -12.24 -0.12 -9.33 16 16 C 0.06 0.89 11.22 -17.40 -0.20 0.69 16 17 C 0.02 0.29 11.21 -17.39 -0.19 0.10 16 18 N -0.42 -7.29 10.41 -9.12 -0.10 -7.39 16 19 C 0.10 1.77 6.31 -82.15 -0.52 1.25 16 20 C 0.12 1.96 6.94 -4.98 -0.03 1.93 16 21 N -0.84 -11.63 9.62 -11.41 -0.11 -11.74 16 22 H 0.00 -0.06 7.02 -51.93 -0.36 -0.42 16 23 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.09 2.37 6.20 -51.93 -0.32 2.05 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 28 H 0.08 1.64 6.50 -51.93 -0.34 1.30 16 29 H 0.16 1.89 8.06 -52.48 -0.42 1.47 16 30 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.25 7.31 -51.93 -0.38 0.87 16 33 H 0.34 3.86 9.08 -39.29 -0.36 3.51 16 34 H 0.34 4.74 8.97 -39.29 -0.35 4.39 16 LS Contribution 284.44 15.07 4.29 4.29 Total: -1.00 -30.00 284.44 -6.71 -36.72 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.53 Total: 6.24 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.14 Total: 0.78 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.31 Total: -63.78 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.00 -6.71 -36.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337795510.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.281 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds