Wall clock time and date at job start Sun Mar 29 2020 21:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47283 * 2 1 4 4 C 1.50706 * 109.47325 * 240.00279 * 2 1 3 5 5 H 1.07996 * 120.00172 * 239.99794 * 4 2 1 6 6 C 1.37874 * 119.99960 * 59.99750 * 4 2 1 7 7 N 1.31523 * 120.00058 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00286 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47043 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47486 * 119.99892 * 8 6 4 11 11 H 1.48505 * 109.47340 * 240.00146 * 8 6 4 12 12 N 1.46902 * 109.47568 * 120.00249 * 2 1 3 13 13 C 1.46903 * 111.00202 * 177.96607 * 12 2 1 14 14 C 1.38997 * 110.99652 * 301.92381 * 12 2 1 15 15 N 1.32683 * 120.09664 * 304.11544 * 14 12 2 16 16 C 1.32214 * 119.91313 * 179.79589 * 15 14 12 17 17 C 1.38207 * 120.10540 * 0.46330 * 16 15 14 18 18 N 1.32235 * 120.18898 * 359.78907 * 17 16 15 19 19 C 1.31957 * 120.08547 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.04888 * 180.02562 * 19 18 17 21 21 N 1.46902 * 109.46858 * 275.01108 * 20 19 18 22 22 H 1.08992 * 109.47273 * 295.75558 * 1 2 3 23 23 H 1.09003 * 109.46707 * 175.76070 * 1 2 3 24 24 H 1.08998 * 109.47060 * 55.75822 * 1 2 3 25 25 H 0.96996 * 120.00220 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.46709 * 55.66423 * 13 12 2 27 27 H 1.08999 * 109.46917 * 175.65796 * 13 12 2 28 28 H 1.08994 * 109.47343 * 295.65987 * 13 12 2 29 29 H 1.08007 * 119.94685 * 180.21439 * 16 15 14 30 30 H 1.07999 * 119.90306 * 179.77231 * 17 16 15 31 31 H 1.09000 * 109.48054 * 35.01044 * 20 19 18 32 32 H 1.08998 * 109.47366 * 155.01434 * 20 19 18 33 33 H 1.00903 * 111.00359 * 181.49889 * 21 20 19 34 34 H 1.00903 * 111.00526 * 305.45381 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1465 -2.2868 -3.6039 10 1 1.1661 -1.5865 -4.8162 11 1 3.1466 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 3.4874 -0.7544 1.2092 14 6 1.5388 -0.0879 2.3549 15 7 1.7537 1.2038 2.5688 16 6 1.2912 1.7761 3.6672 17 6 0.5929 1.0290 4.5969 18 7 0.3807 -0.2597 4.3903 19 6 0.8349 -0.8376 3.2943 20 6 0.5921 -2.3062 3.0595 21 7 1.6351 -3.0892 3.7355 22 1 -0.3633 0.4465 0.9255 23 1 -0.3633 -1.0249 -0.0760 24 1 -0.3633 0.5782 -0.8495 25 1 0.7088 1.1615 -3.4843 26 1 3.8941 0.2531 1.1215 27 1 3.8259 -1.2028 2.1432 28 1 3.8312 -1.3593 0.3702 29 1 1.4628 2.8284 3.8402 30 1 0.2197 1.4990 5.4947 31 1 -0.3844 -2.5815 3.4579 32 1 0.6192 -2.5124 1.9895 33 1 1.5085 -4.0769 3.5728 34 1 2.5551 -2.7904 3.4482 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337795510.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:01 Heat of formation + Delta-G solvation = 40.477994 kcal Electronic energy + Delta-G solvation = -17248.626906 eV Core-core repulsion = 14602.076614 eV Total energy + Delta-G solvation = -2646.550292 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.24355 -38.68482 -36.23905 -35.16422 -33.99200 -31.65721 -31.03631 -27.68180 -26.92824 -26.35089 -24.50591 -23.13932 -21.80882 -18.99975 -18.22882 -17.76870 -17.27404 -17.05414 -16.27700 -15.89314 -15.39241 -15.13059 -15.03482 -14.69194 -14.17770 -13.70788 -13.65122 -13.13974 -13.04061 -12.81122 -12.66919 -12.49522 -12.22010 -12.18763 -12.15529 -11.86707 -11.13363 -10.59701 -10.17099 -9.98753 -9.61975 -9.28029 -8.14841 -6.27402 -0.16449 0.20159 1.42292 1.44066 1.55676 2.39395 2.71576 2.83233 3.15742 3.25429 3.45997 3.64498 3.91208 4.12853 4.32589 4.42346 4.47322 4.63483 4.68926 4.79879 4.84045 4.91696 4.94626 5.08527 5.30505 5.43156 5.62859 5.72207 6.04794 6.12349 6.15592 6.37051 6.59148 6.64039 6.83814 6.92433 7.41677 8.92505 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.031943 B = 0.007883 C = 0.007138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.339711 B = 3551.231203 C = 3921.985979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.229 3.771 3 H -0.024 1.024 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.965 3.035 9 H -0.262 1.262 10 H -0.281 1.281 11 H -0.284 1.284 12 N -0.482 5.482 13 C 0.051 3.949 14 C 0.253 3.747 15 N -0.502 5.502 16 C 0.054 3.946 17 C 0.038 3.962 18 N -0.436 5.436 19 C 0.091 3.909 20 C 0.129 3.871 21 N -0.836 5.836 22 H 0.002 0.998 23 H 0.036 0.964 24 H 0.061 0.939 25 H 0.262 0.738 26 H 0.012 0.988 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.197 0.803 30 H 0.211 0.789 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.357 0.643 34 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.986 -2.822 11.470 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 H -0.007 1.007 4 C -0.557 4.557 5 H 0.087 0.913 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.791 3.209 9 H -0.186 1.186 10 H -0.207 1.207 11 H -0.210 1.210 12 N -0.206 5.206 13 C -0.096 4.096 14 C 0.022 3.978 15 N -0.220 5.220 16 C -0.108 4.108 17 C -0.121 4.121 18 N -0.151 5.151 19 C -0.051 4.051 20 C -0.003 4.003 21 N -0.367 5.367 22 H 0.021 0.979 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.213 0.787 30 H 0.227 0.773 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.172 0.828 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.443 -2.928 11.970 12.331 hybrid contribution 0.688 0.690 -2.050 2.270 sum 1.131 -2.239 9.920 10.232 Atomic orbital electron populations 1.21548 0.97788 0.99503 0.97954 1.19040 0.91947 0.90909 0.85813 1.00680 1.21387 1.31507 1.12555 0.90261 0.91294 1.25760 0.95238 0.95668 1.02113 1.70057 1.37724 1.24229 1.24125 0.85392 0.78058 0.78612 0.78871 1.18559 1.20729 1.20971 1.60416 1.10505 1.49949 0.99769 1.22160 0.85357 0.99885 1.02216 1.21078 0.95074 0.88322 0.93361 1.68628 1.19217 1.12544 1.21609 1.24254 0.94315 1.03040 0.89202 1.24317 0.96557 0.89870 1.01405 1.68290 1.16543 1.11974 1.18337 1.22019 0.94814 0.98406 0.89871 1.20335 0.96594 0.85658 0.97735 1.58740 1.05369 1.08590 1.63987 0.97949 0.94463 0.92033 0.92912 0.96879 0.91115 0.90138 0.78665 0.77276 0.89549 0.92730 0.82823 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.59 8.83 71.98 0.64 -4.95 16 2 C 0.23 11.76 1.87 44.17 0.08 11.84 16 3 H -0.02 -1.45 7.84 -2.39 -0.02 -1.47 16 4 C -0.52 -27.81 7.98 25.60 0.20 -27.61 16 5 H 0.07 3.57 6.54 -2.91 -0.02 3.55 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -53.13 11.37 21.45 0.24 -52.89 16 8 Si 0.97 42.79 29.54 68.60 2.03 44.81 16 9 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 N -0.48 -20.53 3.50 -706.41 -2.47 -23.00 16 13 C 0.05 1.96 9.08 127.69 1.16 3.12 16 14 C 0.25 9.99 3.72 133.02 0.49 10.48 16 15 N -0.50 -19.62 9.85 -192.64 -1.90 -21.51 16 16 C 0.05 1.56 11.22 84.63 0.95 2.51 16 17 C 0.04 0.99 11.21 84.62 0.95 1.94 16 18 N -0.44 -14.00 10.41 -182.77 -1.90 -15.91 16 19 C 0.09 3.22 6.31 42.79 0.27 3.49 16 20 C 0.13 3.99 6.94 85.56 0.59 4.58 16 21 N -0.84 -21.75 9.62 -190.01 -1.83 -23.58 16 22 H 0.00 0.08 7.02 -2.39 -0.02 0.06 16 23 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.06 3.44 6.20 -2.39 -0.01 3.43 16 25 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 2.27 8.08 -2.39 -0.02 2.25 16 28 H 0.08 3.11 6.50 -2.39 -0.02 3.10 16 29 H 0.20 4.00 8.06 -2.91 -0.02 3.98 16 30 H 0.21 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.05 1.87 7.31 -2.39 -0.02 1.86 16 33 H 0.36 7.41 9.08 -89.69 -0.81 6.60 16 34 H 0.34 8.95 8.97 -89.69 -0.80 8.15 16 Total: -1.00 -65.65 284.44 -0.54 -66.19 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.49 Total: 19.44 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 5.79 Total: 6.45 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -7.86 Total: -136.89 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -65.65 -0.54 -66.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337795510.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.663 kcal (2) G-P(sol) polarization free energy of solvation -65.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds