Wall clock time and date at job start Sun Mar 29 2020 21:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46921 * 2 1 4 4 C 1.50702 * 109.46984 * 119.99715 * 2 1 3 5 5 H 1.07995 * 119.99603 * 120.00213 * 4 2 1 6 6 C 1.37877 * 120.00200 * 299.72359 * 4 2 1 7 7 N 1.31520 * 119.99846 * 0.27776 * 6 4 2 8 8 Si 1.86796 * 120.00139 * 180.27732 * 6 4 2 9 9 H 1.48503 * 109.46889 * 60.00021 * 8 6 4 10 10 H 1.48497 * 109.47172 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47124 * 300.00074 * 8 6 4 12 12 N 1.46897 * 109.46938 * 239.99509 * 2 1 3 13 13 C 1.46904 * 110.99887 * 178.54975 * 12 2 1 14 14 C 1.39010 * 110.99697 * 54.60332 * 12 2 1 15 15 N 1.32674 * 120.09718 * 54.58127 * 14 12 2 16 16 C 1.32224 * 119.91106 * 179.78942 * 15 14 12 17 17 C 1.38199 * 120.10220 * 0.47173 * 16 15 14 18 18 N 1.32244 * 120.19279 * 359.78626 * 17 16 15 19 19 C 1.31949 * 120.08392 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.05037 * 179.97438 * 19 18 17 21 21 N 1.46896 * 109.47335 * 274.10943 * 20 19 18 22 22 H 1.09004 * 109.47207 * 305.35449 * 1 2 3 23 23 H 1.08993 * 109.47517 * 65.35295 * 1 2 3 24 24 H 1.09000 * 109.47070 * 185.35356 * 1 2 3 25 25 H 0.96994 * 119.99981 * 180.02562 * 7 6 4 26 26 H 1.08993 * 109.46992 * 58.23132 * 13 12 2 27 27 H 1.09000 * 109.47064 * 178.23456 * 13 12 2 28 28 H 1.09005 * 109.47052 * 298.23423 * 13 12 2 29 29 H 1.08004 * 119.94470 * 180.21073 * 16 15 14 30 30 H 1.08003 * 119.90093 * 179.76495 * 17 16 15 31 31 H 1.09003 * 109.47122 * 34.11628 * 20 19 18 32 32 H 1.09003 * 109.46925 * 154.10994 * 20 19 18 33 33 H 1.00897 * 110.99698 * 56.04758 * 21 20 19 34 34 H 1.00904 * 111.00010 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.7039 -0.2360 2.4828 7 7 0.9478 0.8334 2.6034 8 14 2.3330 -1.1120 4.0080 9 1 3.8180 -1.1113 4.0021 10 1 1.8429 -0.4084 5.2204 11 1 1.8386 -2.5123 4.0138 12 7 2.0196 -0.6926 -1.1994 13 6 3.4877 -0.6822 -1.2508 14 6 1.4769 -0.1366 -2.3520 15 7 1.5989 1.1639 -2.5845 16 6 1.0848 1.6882 -3.6842 17 6 0.4127 0.8854 -4.5862 18 7 0.2842 -0.4105 -4.3560 19 6 0.7984 -0.9424 -3.2634 20 6 0.6510 -2.4192 -3.0016 21 7 -0.6303 -2.6719 -2.3293 22 1 -0.3634 0.5947 0.8382 23 1 -0.3634 0.4285 -0.9340 24 1 -0.3633 -1.0232 0.0959 25 1 0.7171 1.1673 3.4843 26 1 3.8860 -1.1576 -0.3545 27 1 3.8243 -1.2284 -2.1320 28 1 3.8421 0.3472 -1.3041 29 1 1.1868 2.7462 -3.8757 30 1 -0.0092 1.3177 -5.4815 31 1 0.6781 -2.9603 -3.9474 32 1 1.4684 -2.7586 -2.3653 33 1 -1.4004 -2.3078 -2.8701 34 1 -0.7527 -3.6558 -2.1423 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337795513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:03 Heat of formation + Delta-G solvation = 67.395936 kcal Electronic energy + Delta-G solvation = -17300.222209 eV Core-core repulsion = 14654.839166 eV Total energy + Delta-G solvation = -2645.383043 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.85236 -36.94972 -34.97600 -33.26925 -32.42621 -30.11431 -29.06975 -25.82893 -25.65334 -24.45077 -22.76193 -21.86128 -19.90206 -17.52452 -16.37107 -16.16785 -15.88712 -15.19850 -14.91130 -14.39302 -13.92007 -13.55906 -13.27399 -13.06435 -12.70961 -12.23527 -11.75020 -11.54826 -11.17138 -11.04121 -10.91889 -10.70375 -10.60738 -10.12258 -10.10884 -9.93991 -9.17381 -8.70722 -8.58735 -8.41355 -8.23802 -7.47620 -5.96735 -4.01068 1.17026 1.53412 3.35238 3.39580 3.41963 4.00837 4.26705 4.43883 4.55631 4.82317 4.98436 5.13174 5.35015 5.39179 5.48828 5.61350 5.96417 6.01534 6.18147 6.32448 6.58312 6.67332 6.94142 7.14924 7.22490 7.41438 7.54268 7.60868 7.75651 7.80665 7.83981 8.15014 8.20386 8.34295 8.58299 9.02414 9.62325 11.10585 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.031991 B = 0.007991 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.026773 B = 3503.174122 C = 3751.122358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.223 3.777 3 H 0.014 0.986 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.276 1.276 12 N -0.481 5.481 13 C 0.041 3.959 14 C 0.304 3.696 15 N -0.468 5.468 16 C 0.059 3.941 17 C 0.017 3.983 18 N -0.439 5.439 19 C 0.093 3.907 20 C 0.134 3.866 21 N -0.829 5.829 22 H 0.078 0.922 23 H -0.006 1.006 24 H 0.047 0.953 25 H 0.261 0.739 26 H 0.087 0.913 27 H 0.043 0.957 28 H 0.027 0.973 29 H 0.159 0.841 30 H 0.161 0.839 31 H 0.031 0.969 32 H 0.103 0.897 33 H 0.335 0.665 34 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.267 -2.742 -11.866 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.118 3.882 3 H 0.031 0.969 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.206 5.206 13 C -0.106 4.106 14 C 0.071 3.929 15 N -0.186 5.186 16 C -0.103 4.103 17 C -0.142 4.142 18 N -0.155 5.155 19 C -0.051 4.051 20 C 0.002 3.998 21 N -0.359 5.359 22 H 0.097 0.903 23 H 0.013 0.987 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.176 0.824 30 H 0.179 0.821 31 H 0.049 0.951 32 H 0.121 0.879 33 H 0.147 0.853 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.196 -2.652 -11.073 11.388 hybrid contribution 0.203 0.134 -0.075 0.254 sum 0.007 -2.518 -11.147 11.428 Atomic orbital electron populations 1.21718 0.97097 1.01036 0.98051 1.19343 0.92577 0.92396 0.83844 0.96853 1.21007 1.31443 1.12246 0.89492 0.91860 1.24907 0.95211 0.95051 0.98934 1.69917 1.36753 1.22853 1.23487 0.86557 0.78989 0.79724 0.82072 1.20395 1.21439 1.20189 1.60589 1.07305 1.52510 1.00165 1.22233 0.86681 0.99957 1.01772 1.21059 0.92258 0.87073 0.92465 1.68766 1.17243 1.14207 1.18407 1.23571 0.94903 1.01391 0.90400 1.23433 0.99607 0.90292 1.00877 1.68123 1.15743 1.12923 1.18678 1.21921 0.95081 0.98007 0.90134 1.20372 0.94565 0.88119 0.96737 1.58468 1.02928 1.21786 1.52686 0.90299 0.98711 0.93339 0.92958 0.89435 0.93856 0.95437 0.82363 0.82146 0.95108 0.87852 0.85272 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 8.78 37.16 0.33 -2.81 16 2 C 0.22 5.78 1.81 -68.87 -0.12 5.65 16 3 H 0.01 0.40 7.93 -51.93 -0.41 -0.01 16 4 C -0.50 -13.76 7.91 -34.44 -0.27 -14.03 16 5 H 0.06 1.69 6.78 -52.49 -0.36 1.34 16 6 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 7 N -0.89 -25.83 11.39 55.43 0.63 -25.20 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.48 -10.58 3.51 -174.63 -0.61 -11.19 16 13 C 0.04 0.81 9.23 60.07 0.55 1.36 16 14 C 0.30 6.20 3.60 -154.72 -0.56 5.64 16 15 N -0.47 -9.43 9.82 -12.24 -0.12 -9.56 16 16 C 0.06 0.92 11.22 -17.40 -0.20 0.73 16 17 C 0.02 0.24 11.21 -17.39 -0.19 0.04 16 18 N -0.44 -7.27 10.41 -9.12 -0.09 -7.37 16 19 C 0.09 1.68 6.32 -82.15 -0.52 1.16 16 20 C 0.13 2.11 6.92 -4.98 -0.03 2.08 16 21 N -0.83 -12.59 9.61 -11.41 -0.11 -12.70 16 22 H 0.08 2.23 6.24 -51.93 -0.32 1.91 16 23 H -0.01 -0.16 6.86 -51.93 -0.36 -0.51 16 24 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.09 1.77 6.50 -51.93 -0.34 1.43 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 30 H 0.16 1.64 8.06 -52.48 -0.42 1.21 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.10 1.73 7.34 -51.93 -0.38 1.35 16 33 H 0.34 4.82 8.98 -39.29 -0.35 4.47 16 34 H 0.34 4.28 9.08 -39.29 -0.36 3.92 16 LS Contribution 284.56 15.07 4.29 4.29 Total: -1.00 -31.17 284.56 -6.70 -37.86 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.54 Total: 6.11 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.11 Total: 1.41 kcal Atomic # 7 Polarization: -65.70 SS G_CDS: -0.31 Total: -66.01 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.17 -6.70 -37.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337795513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.259 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds