Wall clock time and date at job start Sun Mar 29 2020 21:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46921 * 2 1 4 4 C 1.50702 * 109.46984 * 119.99715 * 2 1 3 5 5 H 1.07995 * 119.99603 * 120.00213 * 4 2 1 6 6 C 1.37877 * 120.00200 * 299.72359 * 4 2 1 7 7 N 1.31520 * 119.99846 * 0.27776 * 6 4 2 8 8 Si 1.86796 * 120.00139 * 180.27732 * 6 4 2 9 9 H 1.48503 * 109.46889 * 60.00021 * 8 6 4 10 10 H 1.48497 * 109.47172 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47124 * 300.00074 * 8 6 4 12 12 N 1.46897 * 109.46938 * 239.99509 * 2 1 3 13 13 C 1.46904 * 110.99887 * 178.54975 * 12 2 1 14 14 C 1.39010 * 110.99697 * 54.60332 * 12 2 1 15 15 N 1.32674 * 120.09718 * 54.58127 * 14 12 2 16 16 C 1.32224 * 119.91106 * 179.78942 * 15 14 12 17 17 C 1.38199 * 120.10220 * 0.47173 * 16 15 14 18 18 N 1.32244 * 120.19279 * 359.78626 * 17 16 15 19 19 C 1.31949 * 120.08392 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.05037 * 179.97438 * 19 18 17 21 21 N 1.46896 * 109.47335 * 274.10943 * 20 19 18 22 22 H 1.09004 * 109.47207 * 305.35449 * 1 2 3 23 23 H 1.08993 * 109.47517 * 65.35295 * 1 2 3 24 24 H 1.09000 * 109.47070 * 185.35356 * 1 2 3 25 25 H 0.96994 * 119.99981 * 180.02562 * 7 6 4 26 26 H 1.08993 * 109.46992 * 58.23132 * 13 12 2 27 27 H 1.09000 * 109.47064 * 178.23456 * 13 12 2 28 28 H 1.09005 * 109.47052 * 298.23423 * 13 12 2 29 29 H 1.08004 * 119.94470 * 180.21073 * 16 15 14 30 30 H 1.08003 * 119.90093 * 179.76495 * 17 16 15 31 31 H 1.09003 * 109.47122 * 34.11628 * 20 19 18 32 32 H 1.09003 * 109.46925 * 154.10994 * 20 19 18 33 33 H 1.00897 * 110.99698 * 56.04758 * 21 20 19 34 34 H 1.00904 * 111.00010 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.7039 -0.2360 2.4828 7 7 0.9478 0.8334 2.6034 8 14 2.3330 -1.1120 4.0080 9 1 3.8180 -1.1113 4.0021 10 1 1.8429 -0.4084 5.2204 11 1 1.8386 -2.5123 4.0138 12 7 2.0196 -0.6926 -1.1994 13 6 3.4877 -0.6822 -1.2508 14 6 1.4769 -0.1366 -2.3520 15 7 1.5989 1.1639 -2.5845 16 6 1.0848 1.6882 -3.6842 17 6 0.4127 0.8854 -4.5862 18 7 0.2842 -0.4105 -4.3560 19 6 0.7984 -0.9424 -3.2634 20 6 0.6510 -2.4192 -3.0016 21 7 -0.6303 -2.6719 -2.3293 22 1 -0.3634 0.5947 0.8382 23 1 -0.3634 0.4285 -0.9340 24 1 -0.3633 -1.0232 0.0959 25 1 0.7171 1.1673 3.4843 26 1 3.8860 -1.1576 -0.3545 27 1 3.8243 -1.2284 -2.1320 28 1 3.8421 0.3472 -1.3041 29 1 1.1868 2.7462 -3.8757 30 1 -0.0092 1.3177 -5.4815 31 1 0.6781 -2.9603 -3.9474 32 1 1.4684 -2.7586 -2.3653 33 1 -1.4004 -2.3078 -2.8701 34 1 -0.7527 -3.6558 -2.1423 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337795513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:03 Heat of formation + Delta-G solvation = 43.049624 kcal Electronic energy + Delta-G solvation = -17301.277945 eV Core-core repulsion = 14654.839166 eV Total energy + Delta-G solvation = -2646.438778 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.21558 -38.61472 -36.23603 -35.08334 -33.97362 -31.66634 -30.89249 -27.62716 -26.94688 -26.28863 -24.40487 -23.12474 -21.74037 -18.98920 -18.12191 -17.65072 -17.42918 -16.86198 -16.28000 -15.95289 -15.40743 -14.96958 -14.90995 -14.68269 -14.06619 -13.92537 -13.57575 -12.97243 -12.87631 -12.71860 -12.63513 -12.51427 -12.15352 -12.12693 -12.06931 -11.84177 -11.10032 -10.52177 -10.20813 -9.92787 -9.43070 -9.20509 -8.08631 -6.20474 -0.13291 0.20196 1.45583 1.48314 1.55459 2.43773 2.71221 2.90916 3.20921 3.26152 3.49760 3.70352 3.98963 4.13215 4.29517 4.42933 4.50337 4.63185 4.77765 4.82874 4.95049 4.99985 5.05759 5.16608 5.35453 5.51321 5.71867 5.78959 6.18353 6.23115 6.29101 6.35797 6.70680 6.71963 6.88627 6.94440 7.47450 8.98354 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.031991 B = 0.007991 C = 0.007463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.026773 B = 3503.174122 C = 3751.122358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.236 3.764 3 H -0.032 1.032 4 C -0.516 4.516 5 H 0.066 0.934 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.965 3.035 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.269 1.269 12 N -0.478 5.478 13 C 0.045 3.955 14 C 0.265 3.735 15 N -0.506 5.506 16 C 0.053 3.947 17 C 0.038 3.962 18 N -0.443 5.443 19 C 0.088 3.912 20 C 0.138 3.862 21 N -0.843 5.843 22 H 0.050 0.950 23 H -0.004 1.004 24 H 0.042 0.958 25 H 0.261 0.739 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.012 0.988 29 H 0.195 0.805 30 H 0.212 0.788 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.340 0.660 34 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 -3.367 -13.324 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.130 3.870 3 H -0.014 1.014 4 C -0.554 4.554 5 H 0.084 0.916 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.790 3.210 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.194 1.194 12 N -0.202 5.202 13 C -0.102 4.102 14 C 0.035 3.965 15 N -0.224 5.224 16 C -0.109 4.109 17 C -0.122 4.122 18 N -0.159 5.159 19 C -0.054 4.054 20 C 0.006 3.994 21 N -0.375 5.375 22 H 0.069 0.931 23 H 0.015 0.985 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.212 0.788 30 H 0.228 0.772 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.152 0.848 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.333 -3.326 -12.539 12.977 hybrid contribution 0.214 0.447 0.198 0.533 sum -0.119 -2.879 -12.342 12.674 Atomic orbital electron populations 1.21398 0.97295 0.99824 0.96812 1.18946 0.92184 0.90198 0.85669 1.01422 1.21309 1.31434 1.12320 0.90380 0.91572 1.25758 0.95340 0.95696 1.02066 1.70067 1.37877 1.24268 1.24068 0.85502 0.78722 0.78662 0.78067 1.19470 1.21304 1.19390 1.60402 1.08111 1.52002 0.99710 1.22214 0.85973 0.99314 1.02701 1.21034 0.94738 0.87865 0.92905 1.68643 1.18644 1.14491 1.20667 1.24239 0.94135 1.03285 0.89230 1.24252 0.97131 0.89337 1.01482 1.68259 1.15712 1.14043 1.17906 1.22085 0.94496 0.98754 0.90091 1.20313 0.94357 0.87194 0.97531 1.58425 1.02920 1.23116 1.53027 0.93103 0.98474 0.93895 0.93045 0.90280 0.90881 0.96970 0.78835 0.77192 0.92852 0.89181 0.84760 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -5.07 8.78 71.98 0.63 -4.44 16 2 C 0.24 12.60 1.81 44.17 0.08 12.68 16 3 H -0.03 -1.96 7.93 -2.39 -0.02 -1.98 16 4 C -0.52 -28.73 7.91 25.60 0.20 -28.53 16 5 H 0.07 3.57 6.78 -2.91 -0.02 3.55 16 6 C 0.01 0.56 5.31 84.65 0.45 1.01 16 7 N -0.92 -54.81 11.39 21.45 0.24 -54.56 16 8 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 N -0.48 -21.32 3.51 -706.40 -2.48 -23.80 16 13 C 0.05 1.81 9.23 127.69 1.18 2.99 16 14 C 0.27 10.77 3.60 133.02 0.48 11.25 16 15 N -0.51 -20.21 9.82 -192.64 -1.89 -22.10 16 16 C 0.05 1.54 11.22 84.62 0.95 2.49 16 17 C 0.04 0.94 11.21 84.62 0.95 1.89 16 18 N -0.44 -13.47 10.41 -182.77 -1.90 -15.38 16 19 C 0.09 3.06 6.32 42.80 0.27 3.34 16 20 C 0.14 4.16 6.92 85.56 0.59 4.76 16 21 N -0.84 -24.63 9.61 -190.01 -1.83 -26.46 16 22 H 0.05 2.97 6.24 -2.38 -0.01 2.95 16 23 H 0.00 -0.19 6.86 -2.39 -0.02 -0.21 16 24 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.08 3.24 6.50 -2.39 -0.02 3.23 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.01 0.50 8.09 -2.38 -0.02 0.48 16 29 H 0.19 4.03 8.06 -2.91 -0.02 4.00 16 30 H 0.21 3.10 8.06 -2.91 -0.02 3.07 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 2.95 7.34 -2.39 -0.02 2.93 16 33 H 0.34 9.29 8.98 -89.70 -0.81 8.49 16 34 H 0.36 8.44 9.08 -89.69 -0.81 7.63 16 Total: -1.00 -68.69 284.56 -0.55 -69.24 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -0.50 Total: 19.56 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.78 Total: 7.44 kcal Atomic # 7 Polarization: -134.45 SS G_CDS: -7.86 Total: -142.30 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -68.69 -0.55 -69.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337795513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.285 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds