Wall clock time and date at job start Sun Mar 29 2020 21:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99868 * 2 1 4 4 C 1.50701 * 109.47327 * 66.04733 * 3 2 1 5 5 H 1.08002 * 119.99969 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00310 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00074 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00139 * 179.97438 * 6 4 3 9 9 H 1.48492 * 109.47215 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47205 * 120.00091 * 8 6 4 11 11 H 1.48504 * 109.46882 * 239.99664 * 8 6 4 12 12 C 1.38332 * 111.00216 * 236.04690 * 2 1 3 13 13 N 1.31575 * 126.07530 * 65.75186 * 12 2 1 14 14 C 1.33371 * 109.69469 * 180.02562 * 13 12 2 15 15 N 1.30584 * 109.11117 * 0.02562 * 14 13 12 16 16 N 1.34980 * 126.07204 * 245.44928 * 12 2 1 17 17 C 1.46503 * 126.82926 * 359.97438 * 16 12 2 18 18 C 1.52999 * 109.47056 * 268.15883 * 17 16 12 19 19 C 1.53004 * 117.49950 * 244.27406 * 18 17 16 20 20 C 1.53000 * 117.49687 * 175.61926 * 18 17 16 21 21 H 1.09006 * 109.46652 * 54.45881 * 1 2 3 22 22 H 1.08996 * 109.47346 * 174.45529 * 1 2 3 23 23 H 1.09001 * 109.47079 * 294.46171 * 1 2 3 24 24 H 1.09002 * 109.47567 * 306.04645 * 3 2 1 25 25 H 1.09002 * 109.47207 * 186.04068 * 3 2 1 26 26 H 0.96996 * 120.00458 * 180.02562 * 7 6 4 27 27 H 1.07998 * 125.43705 * 180.02562 * 14 13 12 28 28 H 1.08999 * 109.47069 * 28.16250 * 17 16 12 29 29 H 1.09000 * 109.47086 * 148.15876 * 17 16 12 30 30 H 1.08994 * 115.54922 * 29.94371 * 18 17 16 31 31 H 1.09004 * 117.49341 * 0.02562 * 19 18 17 32 32 H 1.08997 * 117.49773 * 145.01620 * 19 18 17 33 33 H 1.09004 * 117.49432 * 214.97769 * 20 18 17 34 34 H 1.09002 * 117.49909 * 359.97192 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0276 3.3491 1.5289 7 7 2.7128 4.0016 0.6154 8 14 1.5826 4.1869 3.1382 9 1 0.8135 3.2450 3.9904 10 1 2.8241 4.5935 3.8444 11 1 0.7561 5.3886 2.8585 12 6 1.9648 -0.7213 -1.0712 13 7 1.8348 -0.4084 -2.3426 14 6 2.4371 -1.3294 -3.0961 15 7 2.9587 -2.2416 -2.3208 16 7 2.6729 -1.8681 -0.9977 17 6 3.0621 -2.5833 0.2203 18 6 4.4431 -2.1051 0.6732 19 6 5.5831 -3.1255 0.6610 20 6 4.9857 -2.6606 1.9914 21 1 -0.3633 0.5974 -0.8363 22 1 -0.3634 -1.0228 -0.0993 23 1 -0.3633 0.4255 0.9354 24 1 1.5611 1.9274 -0.8309 25 1 3.0797 1.3444 -0.1081 26 1 2.9880 4.9174 0.7777 27 1 2.4856 -1.3219 -4.1749 28 1 2.3332 -2.3857 1.0063 29 1 3.0966 -3.6537 0.0177 30 1 4.6886 -1.0731 0.4228 31 1 5.3493 -4.1374 0.3299 32 1 6.5787 -2.7647 0.4030 33 1 5.5887 -1.9941 2.6082 34 1 4.3587 -3.3664 2.5363 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339482327.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:18 Heat of formation + Delta-G solvation = 126.496307 kcal Electronic energy + Delta-G solvation = -16780.885598 eV Core-core repulsion = 14138.065339 eV Total energy + Delta-G solvation = -2642.820259 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.57627 -37.47959 -36.55564 -33.07367 -32.62798 -29.96814 -27.46706 -27.08956 -25.20248 -22.45473 -22.25304 -21.73450 -20.70163 -19.44539 -17.09637 -16.28095 -15.61732 -15.46971 -14.91644 -14.58163 -14.03382 -13.92319 -13.28075 -13.17538 -13.07539 -12.13714 -11.75512 -11.69853 -11.50117 -11.30689 -11.09273 -10.80753 -10.66702 -10.46201 -10.14345 -9.94936 -9.54256 -9.42465 -9.26247 -8.91659 -8.56112 -7.90978 -6.10581 -4.14274 2.03943 2.59709 3.26825 3.34298 3.37711 3.40549 3.83745 4.29434 4.50934 4.72829 4.86049 4.96370 5.11493 5.17253 5.25590 5.37535 5.60712 5.66213 5.75658 5.89561 5.91348 6.13482 6.23479 6.29202 6.53405 6.70181 6.73362 6.91667 7.19797 7.31608 7.68040 7.77681 7.99361 8.35084 8.63465 8.91598 9.49857 11.00104 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.007891 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.395159 B = 3547.580167 C = 4309.667639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.478 5.478 3 C 0.210 3.790 4 C -0.514 4.514 5 H 0.067 0.933 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.901 3.099 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.467 3.533 13 N -0.566 5.566 14 C 0.197 3.803 15 N -0.331 5.331 16 N -0.367 5.367 17 C 0.171 3.829 18 C -0.164 4.164 19 C -0.178 4.178 20 C -0.166 4.166 21 H 0.038 0.962 22 H 0.045 0.955 23 H 0.087 0.913 24 H 0.015 0.985 25 H 0.028 0.972 26 H 0.263 0.737 27 H 0.210 0.790 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 -12.464 0.091 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.205 5.205 3 C 0.086 3.914 4 C -0.553 4.553 5 H 0.086 0.914 6 C -0.144 4.144 7 N -0.531 5.531 8 Si 0.729 3.271 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.102 3.898 13 N -0.297 5.297 14 C -0.107 4.107 15 N -0.160 5.160 16 N -0.159 5.159 17 C 0.049 3.951 18 C -0.183 4.183 19 C -0.215 4.215 20 C -0.204 4.204 21 H 0.056 0.944 22 H 0.064 0.936 23 H 0.106 0.894 24 H 0.033 0.967 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.226 0.774 28 H 0.125 0.875 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.390 -12.890 0.169 12.966 hybrid contribution -0.261 1.049 0.260 1.112 sum 1.129 -11.840 0.429 11.902 Atomic orbital electron populations 1.22202 0.84775 0.99729 1.02947 1.59473 1.09198 1.19460 1.32360 1.19823 0.95347 0.78249 0.97962 1.21096 1.35764 0.97149 1.01311 0.91443 1.24978 0.95083 0.97176 0.97133 1.69983 1.37698 1.11507 1.33915 0.86392 0.78187 0.79386 0.83160 1.19548 1.20986 1.20959 1.22392 0.91186 0.86464 0.89752 1.71152 1.28045 1.29217 1.01304 1.25694 0.95093 0.89095 1.00854 1.77899 1.26327 1.24850 0.86918 1.50277 1.40737 1.19205 1.05649 1.21189 0.95583 0.95534 0.82820 1.22573 0.93810 0.99829 1.02067 1.23058 0.98063 0.99109 1.01252 1.22938 1.03547 1.03459 0.90446 0.94357 0.93645 0.89430 0.96740 0.95382 0.92753 0.77371 0.87520 0.89410 0.87050 0.88778 0.88921 0.88333 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.98 9.26 60.07 0.56 1.54 16 2 N -0.48 -10.39 4.68 -184.19 -0.86 -11.25 16 3 C 0.21 5.48 4.59 -4.98 -0.02 5.45 16 4 C -0.51 -13.90 8.59 -34.44 -0.30 -14.20 16 5 H 0.07 1.76 7.10 -52.49 -0.37 1.39 16 6 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 7 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.47 9.73 6.29 -320.80 -2.02 7.72 16 13 N -0.57 -11.92 11.15 -15.21 -0.17 -12.09 16 14 C 0.20 3.49 13.02 -91.81 -1.20 2.29 16 15 N -0.33 -6.00 12.68 29.29 0.37 -5.63 16 16 N -0.37 -6.75 3.65 -61.93 -0.23 -6.97 16 17 C 0.17 2.53 6.72 -4.04 -0.03 2.50 16 18 C -0.16 -2.39 6.01 -90.62 -0.54 -2.93 16 19 C -0.18 -2.11 10.18 -26.69 -0.27 -2.38 16 20 C -0.17 -1.94 10.25 -26.70 -0.27 -2.22 16 21 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 22 H 0.04 0.75 8.06 -51.93 -0.42 0.34 16 23 H 0.09 1.65 7.02 -51.93 -0.36 1.28 16 24 H 0.01 0.42 8.07 -51.93 -0.42 0.00 16 25 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.21 2.73 8.06 -52.49 -0.42 2.31 16 28 H 0.11 1.53 8.10 -51.93 -0.42 1.11 16 29 H 0.09 1.10 7.88 -51.93 -0.41 0.69 16 30 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 31 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 295.99 15.07 4.46 4.46 Total: -1.00 -31.09 295.99 -9.81 -40.90 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.91 Total: 0.77 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -4.19 Total: -0.70 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.15 Total: -61.37 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.09 -9.81 -40.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339482327.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.395 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds