Wall clock time and date at job start Sun Mar 29 2020 21:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99868 * 2 1 4 4 C 1.50701 * 109.47327 * 66.04733 * 3 2 1 5 5 H 1.08002 * 119.99969 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00310 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00074 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00139 * 179.97438 * 6 4 3 9 9 H 1.48492 * 109.47215 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47205 * 120.00091 * 8 6 4 11 11 H 1.48504 * 109.46882 * 239.99664 * 8 6 4 12 12 C 1.38332 * 111.00216 * 236.04690 * 2 1 3 13 13 N 1.31575 * 126.07530 * 65.75186 * 12 2 1 14 14 C 1.33371 * 109.69469 * 180.02562 * 13 12 2 15 15 N 1.30584 * 109.11117 * 0.02562 * 14 13 12 16 16 N 1.34980 * 126.07204 * 245.44928 * 12 2 1 17 17 C 1.46503 * 126.82926 * 359.97438 * 16 12 2 18 18 C 1.52999 * 109.47056 * 268.15883 * 17 16 12 19 19 C 1.53004 * 117.49950 * 244.27406 * 18 17 16 20 20 C 1.53000 * 117.49687 * 175.61926 * 18 17 16 21 21 H 1.09006 * 109.46652 * 54.45881 * 1 2 3 22 22 H 1.08996 * 109.47346 * 174.45529 * 1 2 3 23 23 H 1.09001 * 109.47079 * 294.46171 * 1 2 3 24 24 H 1.09002 * 109.47567 * 306.04645 * 3 2 1 25 25 H 1.09002 * 109.47207 * 186.04068 * 3 2 1 26 26 H 0.96996 * 120.00458 * 180.02562 * 7 6 4 27 27 H 1.07998 * 125.43705 * 180.02562 * 14 13 12 28 28 H 1.08999 * 109.47069 * 28.16250 * 17 16 12 29 29 H 1.09000 * 109.47086 * 148.15876 * 17 16 12 30 30 H 1.08994 * 115.54922 * 29.94371 * 18 17 16 31 31 H 1.09004 * 117.49341 * 0.02562 * 19 18 17 32 32 H 1.08997 * 117.49773 * 145.01620 * 19 18 17 33 33 H 1.09004 * 117.49432 * 214.97769 * 20 18 17 34 34 H 1.09002 * 117.49909 * 359.97192 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0276 3.3491 1.5289 7 7 2.7128 4.0016 0.6154 8 14 1.5826 4.1869 3.1382 9 1 0.8135 3.2450 3.9904 10 1 2.8241 4.5935 3.8444 11 1 0.7561 5.3886 2.8585 12 6 1.9648 -0.7213 -1.0712 13 7 1.8348 -0.4084 -2.3426 14 6 2.4371 -1.3294 -3.0961 15 7 2.9587 -2.2416 -2.3208 16 7 2.6729 -1.8681 -0.9977 17 6 3.0621 -2.5833 0.2203 18 6 4.4431 -2.1051 0.6732 19 6 5.5831 -3.1255 0.6610 20 6 4.9857 -2.6606 1.9914 21 1 -0.3633 0.5974 -0.8363 22 1 -0.3634 -1.0228 -0.0993 23 1 -0.3633 0.4255 0.9354 24 1 1.5611 1.9274 -0.8309 25 1 3.0797 1.3444 -0.1081 26 1 2.9880 4.9174 0.7777 27 1 2.4856 -1.3219 -4.1749 28 1 2.3332 -2.3857 1.0063 29 1 3.0966 -3.6537 0.0177 30 1 4.6886 -1.0731 0.4228 31 1 5.3493 -4.1374 0.3299 32 1 6.5787 -2.7647 0.4030 33 1 5.5887 -1.9941 2.6082 34 1 4.3587 -3.3664 2.5363 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339482327.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:18 Heat of formation + Delta-G solvation = 108.829795 kcal Electronic energy + Delta-G solvation = -16781.651675 eV Core-core repulsion = 14138.065339 eV Total energy + Delta-G solvation = -2643.586336 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.07256 -38.54713 -38.31162 -34.75826 -34.38993 -31.54125 -29.42070 -28.42630 -26.92298 -24.29712 -23.27557 -23.11332 -21.99425 -20.97019 -18.82710 -18.04077 -17.23393 -16.89707 -16.43109 -16.28088 -15.40630 -15.22699 -14.89124 -14.80974 -14.33074 -14.07761 -13.42696 -12.98121 -12.92271 -12.83941 -12.65660 -12.45462 -12.36995 -12.10798 -11.55304 -11.43660 -11.06701 -10.98209 -10.70208 -10.67777 -10.41892 -9.74953 -8.23345 -6.35837 0.51554 1.20198 1.44760 1.44942 1.59040 1.90531 2.39651 2.81868 2.90081 3.11222 3.62828 3.67755 3.68715 3.92566 4.09692 4.13436 4.31774 4.55123 4.57090 4.65125 4.75590 4.87516 4.97569 5.02807 5.09742 5.14185 5.22855 5.31161 5.38403 5.54428 5.67908 5.87150 5.95330 6.48701 6.77954 7.12637 7.34301 8.88877 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.007891 C = 0.006495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.395159 B = 3547.580167 C = 4309.667639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.473 5.473 3 C 0.235 3.765 4 C -0.524 4.524 5 H 0.079 0.921 6 C 0.003 3.997 7 N -0.935 5.935 8 Si 0.977 3.023 9 H -0.254 1.254 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.443 3.557 13 N -0.598 5.598 14 C 0.196 3.804 15 N -0.331 5.331 16 N -0.361 5.361 17 C 0.168 3.832 18 C -0.194 4.194 19 C -0.162 4.162 20 C -0.149 4.149 21 H 0.023 0.977 22 H 0.075 0.925 23 H 0.091 0.909 24 H -0.023 1.023 25 H -0.011 1.011 26 H 0.265 0.735 27 H 0.250 0.750 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.537 -14.187 1.452 14.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.199 5.199 3 C 0.110 3.890 4 C -0.562 4.562 5 H 0.097 0.903 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.801 3.199 9 H -0.178 1.178 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.077 3.923 13 N -0.331 5.331 14 C -0.108 4.108 15 N -0.160 5.160 16 N -0.152 5.152 17 C 0.046 3.954 18 C -0.213 4.213 19 C -0.199 4.199 20 C -0.186 4.186 21 H 0.042 0.958 22 H 0.093 0.907 23 H 0.110 0.890 24 H -0.005 1.005 25 H 0.007 0.993 26 H 0.074 0.926 27 H 0.266 0.734 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.011 -14.659 1.539 14.774 hybrid contribution -0.088 1.523 -0.244 1.545 sum 0.923 -13.136 1.295 13.232 Atomic orbital electron populations 1.22242 0.83179 1.01383 1.02489 1.59313 1.10529 1.16857 1.33236 1.19287 0.92715 0.80439 0.96573 1.21410 1.35654 0.97575 1.01598 0.90308 1.25989 0.94698 0.97943 1.00964 1.70133 1.38972 1.11988 1.36374 0.85218 0.78020 0.78267 0.78411 1.17762 1.20680 1.20541 1.22314 0.92683 0.87615 0.89650 1.71080 1.29309 1.30690 1.01974 1.26471 0.93941 0.87910 1.02447 1.77862 1.26115 1.25109 0.86872 1.50502 1.39449 1.18550 1.06690 1.21503 0.95601 0.96680 0.81571 1.22391 0.94991 0.98343 1.05602 1.23155 0.96857 0.99003 1.00898 1.23066 1.02801 1.02995 0.89783 0.95798 0.90654 0.89048 1.00505 0.99297 0.92584 0.73441 0.87208 0.86511 0.91592 0.86690 0.88966 0.88487 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.08 9.26 127.69 1.18 3.26 16 2 N -0.47 -20.98 4.68 -736.66 -3.45 -24.42 16 3 C 0.24 12.84 4.59 85.56 0.39 13.23 16 4 C -0.52 -28.77 8.59 25.60 0.22 -28.55 16 5 H 0.08 4.07 7.10 -2.91 -0.02 4.05 16 6 C 0.00 0.14 5.46 84.65 0.46 0.61 16 7 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 8 Si 0.98 42.88 29.54 68.60 2.03 44.91 16 9 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.44 18.74 6.29 260.79 1.64 20.37 16 13 N -0.60 -25.56 11.15 -202.03 -2.25 -27.82 16 14 C 0.20 6.78 13.02 180.76 2.35 9.13 16 15 N -0.33 -11.64 12.68 -61.24 -0.78 -12.41 16 16 N -0.36 -13.09 3.65 -349.86 -1.28 -14.37 16 17 C 0.17 4.72 6.72 86.38 0.58 5.30 16 18 C -0.19 -5.58 6.01 -10.79 -0.06 -5.65 16 19 C -0.16 -3.52 10.18 30.62 0.31 -3.20 16 20 C -0.15 -3.18 10.25 30.62 0.31 -2.87 16 21 H 0.02 0.96 8.07 -2.38 -0.02 0.94 16 22 H 0.07 2.41 8.06 -2.39 -0.02 2.39 16 23 H 0.09 3.38 7.02 -2.39 -0.02 3.36 16 24 H -0.02 -1.40 8.07 -2.39 -0.02 -1.42 16 25 H -0.01 -0.68 8.05 -2.39 -0.02 -0.70 16 26 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 27 H 0.25 6.05 8.06 -2.91 -0.02 6.02 16 28 H 0.11 2.98 8.10 -2.39 -0.02 2.96 16 29 H 0.12 2.59 7.88 -2.39 -0.02 2.57 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.11 2.03 8.03 -2.38 -0.02 2.01 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -69.13 295.99 3.03 -66.11 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.08 Total: 12.47 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 7.39 Total: 11.64 kcal Atomic # 7 Polarization: -127.66 SS G_CDS: -7.47 Total: -135.13 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -69.13 3.03 -66.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339482327.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.935 kcal (2) G-P(sol) polarization free energy of solvation -69.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds